Search of human proteins with 239743708

Search of human proteins with 239743708

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743708 PREDICTED: hypothetical protein XP_002342930 [Homo
sapiens]
         (295 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755006 PREDICTED: hypothetical protein [Homo sapiens]           607   e-174
gi|239749558 PREDICTED: hypothetical protein XP_002347085 [Homo ...   607   e-174
gi|239743708 PREDICTED: hypothetical protein XP_002342930 [Homo ...   607   e-174
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      33   0.39 
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                33   0.39 
gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo s...    32   0.51 
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is...    31   1.1  
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is...    31   1.1  
gi|226443152 abhydrolase domain containing 14B [Homo sapiens]          31   1.5  
gi|14249382 abhydrolase domain containing 14B [Homo sapiens]           31   1.5  
gi|29336043 caytaxin [Homo sapiens]                                    30   1.9  
gi|58761508 midnolin [Homo sapiens]                                    30   1.9  
gi|88703045 proline rich 11 [Homo sapiens]                             30   1.9  
gi|4503489 ephrin-B3 precursor [Homo sapiens]                          30   3.3  
gi|22748701 zinc finger protein 641 [Homo sapiens]                     30   3.3  
gi|110611176 glutamate receptor, metabotropic 6 precursor [Homo ...    29   4.3  
gi|11386161 alpha 2 type IX collagen [Homo sapiens]                    29   4.3  
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]      29   4.3  
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]       29   4.3  
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]       29   4.3  
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]       29   4.3  
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]       29   4.3  
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]       29   4.3  
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]       29   4.3  
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]       29   4.3  
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]       29   4.3  
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]       29   4.3  
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]       29   4.3  
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]        29   4.3  
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]        29   4.3  

>gi|239755006 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 295

 Score =  607 bits (1566), Expect = e-174
 Identities = 295/295 (100%), Positives = 295/295 (100%)

Query: 1   MQKVLLPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTK 60
           MQKVLLPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTK
Sbjct: 1   MQKVLLPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTK 60

Query: 61  KGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVT 120
           KGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVT
Sbjct: 61  KGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVT 120

Query: 121 PCPNLIVLGCHLDNVLLPGVGICDGVCCAVGQLHLQPDHGVGPLARLNPDHSPSLEVARA 180
           PCPNLIVLGCHLDNVLLPGVGICDGVCCAVGQLHLQPDHGVGPLARLNPDHSPSLEVARA
Sbjct: 121 PCPNLIVLGCHLDNVLLPGVGICDGVCCAVGQLHLQPDHGVGPLARLNPDHSPSLEVARA 180

Query: 181 GGERRWQQVPPTATRTNGELVKGDSCGIVAQGIADTYGDLVLDGGEQVHVANVAAVLEGW 240
           GGERRWQQVPPTATRTNGELVKGDSCGIVAQGIADTYGDLVLDGGEQVHVANVAAVLEGW
Sbjct: 181 GGERRWQQVPPTATRTNGELVKGDSCGIVAQGIADTYGDLVLDGGEQVHVANVAAVLEGW 240

Query: 241 VLLTDHNFGAMPGESASPQHLHRRPFKKPFTCMCDAGRGLGQNPQDPDLALQQKR 295
           VLLTDHNFGAMPGESASPQHLHRRPFKKPFTCMCDAGRGLGQNPQDPDLALQQKR
Sbjct: 241 VLLTDHNFGAMPGESASPQHLHRRPFKKPFTCMCDAGRGLGQNPQDPDLALQQKR 295


>gi|239749558 PREDICTED: hypothetical protein XP_002347085 [Homo
           sapiens]
          Length = 295

 Score =  607 bits (1566), Expect = e-174
 Identities = 295/295 (100%), Positives = 295/295 (100%)

Query: 1   MQKVLLPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTK 60
           MQKVLLPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTK
Sbjct: 1   MQKVLLPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTK 60

Query: 61  KGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVT 120
           KGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVT
Sbjct: 61  KGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVT 120

Query: 121 PCPNLIVLGCHLDNVLLPGVGICDGVCCAVGQLHLQPDHGVGPLARLNPDHSPSLEVARA 180
           PCPNLIVLGCHLDNVLLPGVGICDGVCCAVGQLHLQPDHGVGPLARLNPDHSPSLEVARA
Sbjct: 121 PCPNLIVLGCHLDNVLLPGVGICDGVCCAVGQLHLQPDHGVGPLARLNPDHSPSLEVARA 180

Query: 181 GGERRWQQVPPTATRTNGELVKGDSCGIVAQGIADTYGDLVLDGGEQVHVANVAAVLEGW 240
           GGERRWQQVPPTATRTNGELVKGDSCGIVAQGIADTYGDLVLDGGEQVHVANVAAVLEGW
Sbjct: 181 GGERRWQQVPPTATRTNGELVKGDSCGIVAQGIADTYGDLVLDGGEQVHVANVAAVLEGW 240

Query: 241 VLLTDHNFGAMPGESASPQHLHRRPFKKPFTCMCDAGRGLGQNPQDPDLALQQKR 295
           VLLTDHNFGAMPGESASPQHLHRRPFKKPFTCMCDAGRGLGQNPQDPDLALQQKR
Sbjct: 241 VLLTDHNFGAMPGESASPQHLHRRPFKKPFTCMCDAGRGLGQNPQDPDLALQQKR 295


>gi|239743708 PREDICTED: hypothetical protein XP_002342930 [Homo
           sapiens]
          Length = 295

 Score =  607 bits (1566), Expect = e-174
 Identities = 295/295 (100%), Positives = 295/295 (100%)

Query: 1   MQKVLLPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTK 60
           MQKVLLPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTK
Sbjct: 1   MQKVLLPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTK 60

Query: 61  KGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVT 120
           KGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVT
Sbjct: 61  KGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVT 120

Query: 121 PCPNLIVLGCHLDNVLLPGVGICDGVCCAVGQLHLQPDHGVGPLARLNPDHSPSLEVARA 180
           PCPNLIVLGCHLDNVLLPGVGICDGVCCAVGQLHLQPDHGVGPLARLNPDHSPSLEVARA
Sbjct: 121 PCPNLIVLGCHLDNVLLPGVGICDGVCCAVGQLHLQPDHGVGPLARLNPDHSPSLEVARA 180

Query: 181 GGERRWQQVPPTATRTNGELVKGDSCGIVAQGIADTYGDLVLDGGEQVHVANVAAVLEGW 240
           GGERRWQQVPPTATRTNGELVKGDSCGIVAQGIADTYGDLVLDGGEQVHVANVAAVLEGW
Sbjct: 181 GGERRWQQVPPTATRTNGELVKGDSCGIVAQGIADTYGDLVLDGGEQVHVANVAAVLEGW 240

Query: 241 VLLTDHNFGAMPGESASPQHLHRRPFKKPFTCMCDAGRGLGQNPQDPDLALQQKR 295
           VLLTDHNFGAMPGESASPQHLHRRPFKKPFTCMCDAGRGLGQNPQDPDLALQQKR
Sbjct: 241 VLLTDHNFGAMPGESASPQHLHRRPFKKPFTCMCDAGRGLGQNPQDPDLALQQKR 295


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 28  CSACPHGVPG--SIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPG 74
           C+ CP G PG   +           +    GT  KKG  GPP LP  PG
Sbjct: 561 CNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPG 609


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 28   CSACPHGVPG--SIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPG 74
            C+ CP G PG   +           +    GT  KKG  GPP LP  PG
Sbjct: 1114 CNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPG 1162


>gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo
           sapiens]
          Length = 3014

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 34/122 (27%), Positives = 46/122 (37%), Gaps = 18/122 (14%)

Query: 6   LPVCKIETGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTKKGAEG 65
           LP C     +C   + L     C A    VPG         AAA  + +    T      
Sbjct: 111 LPGCGARARLCGTGARL-----CGALCFPVPGG-------CAAAQHSALAAPTTLPACRC 158

Query: 66  PP-PLPSSPGSQIFVVGGGARELVVLVVLTRS-----LGLRGEVSRFLSPGRSVGGYAPV 119
           PP P P  PG  I +  GG+  L +L  L R+     +GL  E +   +P  S     P+
Sbjct: 159 PPRPRPRCPGRPICLPPGGSVRLRLLCALRRAAGAVRVGLALEAATAGTPSASPSPSPPL 218

Query: 120 TP 121
            P
Sbjct: 219 PP 220


>gi|73747840 LON peptidase N-terminal domain and ring finger 3
           isoform 1 [Homo sapiens]
          Length = 759

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 23/70 (32%), Positives = 29/70 (41%)

Query: 44  AVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEV 103
           A   A+A    MG   K  AEGP PLP+    Q    G    E  VL+    +L  RG +
Sbjct: 24  AERGASAAQVDMGPHPKVAAEGPAPLPTREPEQEQSPGTSTPESKVLLTQADALASRGRI 83

Query: 104 SRFLSPGRSV 113
              L   R +
Sbjct: 84  REALEVYRQL 93


>gi|37622896 LON peptidase N-terminal domain and ring finger 3
           isoform 2 [Homo sapiens]
          Length = 718

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 23/70 (32%), Positives = 29/70 (41%)

Query: 44  AVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQIFVVGGGARELVVLVVLTRSLGLRGEV 103
           A   A+A    MG   K  AEGP PLP+    Q    G    E  VL+    +L  RG +
Sbjct: 24  AERGASAAQVDMGPHPKVAAEGPAPLPTREPEQEQSPGTSTPESKVLLTQADALASRGRI 83

Query: 104 SRFLSPGRSV 113
              L   R +
Sbjct: 84  REALEVYRQL 93


>gi|226443152 abhydrolase domain containing 14B [Homo sapiens]
          Length = 210

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 13  TGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPS- 71
           +G  R S  LL   R S+      G++ RL      A    + G    K A  P P+   
Sbjct: 28  SGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIGEL 87

Query: 72  SPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVTP 121
           +PGS +  V   A EL   VV++ SL     +    +PG  + G+ PV P
Sbjct: 88  APGSFLAAVVD-ALELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAP 136


>gi|14249382 abhydrolase domain containing 14B [Homo sapiens]
          Length = 210

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 13  TGVCRLSSGLLLLCRCSACPHGVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPS- 71
           +G  R S  LL   R S+      G++ RL      A    + G    K A  P P+   
Sbjct: 28  SGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIGEL 87

Query: 72  SPGSQIFVVGGGARELVVLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVTP 121
           +PGS +  V   A EL   VV++ SL     +    +PG  + G+ PV P
Sbjct: 88  APGSFLAAVVD-ALELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAP 136


>gi|29336043 caytaxin [Homo sapiens]
          Length = 371

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 169 PDHSPSLEVARAGGERRWQQVPPTATRTNGELVKGDSCGIVAQGIAD 215
           PD + SLE    G E  W+   P AT  N   + GDS  +   G  +
Sbjct: 101 PDETDSLEFLGNGNELEWEDDTPVATAKN---MPGDSADLFGDGTTE 144


>gi|58761508 midnolin [Homo sapiens]
          Length = 468

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 39/166 (23%), Positives = 58/166 (34%), Gaps = 18/166 (10%)

Query: 40  KRLLAVAAAAARARVMGTLTK---------KGAEGPPPLPS--SPGSQIFVVGGGARELV 88
           + +LA AAAAA AR   ++             A   PP+P+  SP S   +  G  R   
Sbjct: 166 RHVLAAAAAAAAARGDPSIASPVSSPCRPVSSAARVPPVPTSPSPASPSPITAGSFRSHA 225

Query: 89  VLVVLTRSLGLRGEVSRFLSPGRSVGGYAPVTPCPNLIVLGCHLDNVLLPGVGICDGVCC 148
                   +      S   SPG S       +P P     G  +++ +    G+  G   
Sbjct: 226 ASTTCPEQMDCSPTASSSASPGASTTSTPGASPAPRSRKPGAVIESFVNHAPGVFSGTFS 285

Query: 149 AVGQLHLQPDHGVGPLARLNPDHSPSLEVAR--AGGERRWQQVPPT 192
             G LH       G   R   D    L++        R +Q +PP+
Sbjct: 286 --GTLHPNCQDSSG---RPRRDIGTILQILNDLLSATRHYQGMPPS 326


>gi|88703045 proline rich 11 [Homo sapiens]
          Length = 360

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 9   CKIETGVCRLSSGLLLLCRCSACP--------HGVPGSIKRLLAVAAAAARARVMGTLTK 60
           C +E+ +C+L   L  +   S+CP         G   ++   + +    ++A +  TL +
Sbjct: 120 CILESKLCKLQEALKTISESSSCPSCGQTCHMSGKLTNVPACVLITPGDSKAVLPPTLPQ 179

Query: 61  KGAEGPPPLPSSP 73
             +  PPP P  P
Sbjct: 180 PASHFPPPPPPPP 192


>gi|4503489 ephrin-B3 precursor [Homo sapiens]
          Length = 340

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 20/96 (20%)

Query: 11  IETGVCRLSSGLLLLCRCSACPHG----------VPGSIKRLLAVAAAAARARVMG---- 56
           ++ GVC L+ G+ +L R    P G          +P    R  A +    +  + G    
Sbjct: 151 LQGGVC-LTRGMKVLLRVGQSPRGGAVPRKPVSEMPMERDRGAAHSLEPGKENLPGDPTS 209

Query: 57  TLTKKGAEGPPPLPSSPGSQIFVVGGGARELVVLVV 92
             T +GAEGP P PS P      V G A  L +L++
Sbjct: 210 NATSRGAEGPLPPPSMP-----AVAGAAGGLALLLL 240


>gi|22748701 zinc finger protein 641 [Homo sapiens]
          Length = 438

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 176 EVARAGGERRWQQVPPTATRTNGELVKGDSCGIVAQ---GIADTYGDLVLDGGEQVHVAN 232
           +V+    +  W+ + P+ T   GE V  ++CGIV      I        L+GGE+  V +
Sbjct: 113 DVSLCFSQEEWRSLDPSQTDFYGEYVMQENCGIVVSLRFPIPKLDMLSQLEGGEEQWVPD 172

Query: 233 VAAVLEGWVLLTDHNFGAMPGESASPQ 259
              + E  +L   +  G    E  +P+
Sbjct: 173 PQDLEERDILRVTYTGGGSEHEGDTPE 199


>gi|110611176 glutamate receptor, metabotropic 6 precursor [Homo
           sapiens]
          Length = 877

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 10  KIETGVCRLSSGLLLLCRCSACPHGVPG----------------SIKRLLAVAAAAARAR 53
           K E GV RL + L  L R +A P  +PG                ++++ L+   A  R R
Sbjct: 61  KKEQGVHRLEAMLYALDRVNADPELLPGVRLGARLLDTCSRDTYALEQALSFVQALIRGR 120

Query: 54  VMGTLTKKGAEG--PPPLPSSPGSQIFVVGGGARELVVLV 91
             G        G  PP  P+ P   + VVG  A  + ++V
Sbjct: 121 GDGDEVGVRCPGGVPPLRPAPPERVVAVVGASASSVSIMV 160


>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
          Length = 689

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 39  IKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           ++  LA  A +A+   +G +   G  GPP  P  PG Q
Sbjct: 533 LQEQLAEVAVSAKREALGAVGMMGPPGPPGPPGYPGKQ 570


>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
          Length = 717

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 333 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370


>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
          Length = 610

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 282 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 319


>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
          Length = 655

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 271 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 308


>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
          Length = 657

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 273 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 310


>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
          Length = 660

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 276 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 313


>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
          Length = 668

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 311 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 348


>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
          Length = 664

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 280 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 317


>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
          Length = 690

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 333 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370


>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
          Length = 691

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 333 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370


>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
          Length = 686

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 314 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 351


>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
          Length = 676

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 292 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 329


>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
          Length = 688

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 304 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 341


>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
          Length = 703

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 34  GVPGSIKRLLAVAAAAARARVMGTLTKKGAEGPPPLPSSPGSQ 76
           G PG     +AVA       + GT  +KGAEG P LP   G +
Sbjct: 333 GAPG-----IAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.140    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,882,458
Number of Sequences: 37866
Number of extensions: 722898
Number of successful extensions: 2998
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2773
Number of HSP's gapped (non-prelim): 251
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.