Guide to the Human Genome
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Name: LOC100288715 Sequence: fasta or formatted (295aa) NCBI GI: 239743708
Description:

PREDICTED: hypothetical protein XP_002342930

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         25           5
 C cysteine            4.4         13           2
 D aspartate           4.1         12           1
 E glutamate           3.4         10           1
 F phenylalanine       1.7          5           1
 G glycine            12.9         38           3
 H histidine           3.1          9           1
 I isoleucine          2.4          7           1
 K lysine              3.1          9           2
 L leucine            12.5         37           4
 M methionine          1.4          4           1
 N asparagine          2.4          7           1
 P proline             8.5         25           3
 Q glutamine           4.4         13           2
 R arginine            6.4         19           2
 S serine              5.4         16           2
 T threonine           3.7         11           1
 V valine             10.5         31           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342930 
LOC100293317          1.000   PREDICTED: hypothetical protein 
LOC100289719          1.000   PREDICTED: hypothetical protein XP_002347085 
LOC100293055          0.014   PREDICTED: similar to COL22A1 protein 
COL22A1               0.014   collagen, type XXII, alpha 1 
CELSR1                0.012   cadherin EGF LAG seven-pass G-type receptor 1 
LONRF3                0.010   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.010   LON peptidase N-terminal domain and ring finger 3 is...
ABHD14B               0.010   abhydrolase domain containing 14B 
ABHD14B               0.010   abhydrolase domain containing 14B 
ATCAY                 0.009   caytaxin 
MIDN                  0.009   midnolin 
PRR11                 0.009   proline rich 11 
EFNB3                 0.009   ephrin-B3 precursor 
ZNF641                0.009   zinc finger protein 641 
GRM6                  0.007   glutamate receptor, metabotropic 6 precursor 
COL9A2                0.007   alpha 2 type IX collagen 
COL13A1               0.007   alpha 1 type XIII collagen isoform 20 
COL13A1               0.007   alpha 1 type XIII collagen isoform 19 
COL13A1               0.007   alpha 1 type XIII collagen isoform 18 
COL13A1               0.007   alpha 1 type XIII collagen isoform 17 
COL13A1               0.007   alpha 1 type XIII collagen isoform 16 
COL13A1               0.007   alpha 1 type XIII collagen isoform 15 
COL13A1               0.007   alpha 1 type XIII collagen isoform 14 
COL13A1               0.007   alpha 1 type XIII collagen isoform 13 
COL13A1               0.007   alpha 1 type XIII collagen isoform 12 
COL13A1               0.007   alpha 1 type XIII collagen isoform 11 
COL13A1               0.007   alpha 1 type XIII collagen isoform 10 
COL13A1               0.007   alpha 1 type XIII collagen isoform 9 
COL13A1               0.007   alpha 1 type XIII collagen isoform 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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