Guide to the Human Genome
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Search of human proteins with 239743692

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743692 PREDICTED: hypothetical protein LOC402360 [Homo
sapiens]
         (278 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169183877 PREDICTED: similar to hCG1742476 [Homo sapiens]          555   e-158
gi|169179771 PREDICTED: similar to hCG1742476 [Homo sapiens]          555   e-158
gi|239743692 PREDICTED: hypothetical protein LOC402360 [Homo sap...   555   e-158
gi|32483374 nucleolar protein 5A [Homo sapiens]                       325   3e-89
gi|169204941 PREDICTED: similar to Nucleolar protein 5A [Homo sa...   167   7e-42
gi|169205573 PREDICTED: similar to Nucleolar protein 5A [Homo sa...   167   7e-42
gi|169203848 PREDICTED: hypothetical protein [Homo sapiens]           167   7e-42
gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens]              77   1e-14
gi|153945728 microtubule-associated protein 1B [Homo sapiens]          52   6e-07
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     51   1e-06
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi...    51   1e-06
gi|157738619 smoothelin-like 1 [Homo sapiens]                          51   1e-06
gi|15559211 RE1-silencing transcription factor [Homo sapiens]          49   4e-06
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         49   5e-06
gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]           46   3e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             46   4e-05
gi|27734775 hypothetical protein LOC286499 [Homo sapiens]              46   4e-05
gi|32528306 replication factor C large subunit [Homo sapiens]          45   5e-05
gi|15149465 caldesmon 1 isoform 5 [Homo sapiens]                       44   1e-04
gi|4826657 caldesmon 1 isoform 2 [Homo sapiens]                        44   1e-04
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]       44   2e-04
gi|224591430 Ly1 antibody reactive homolog [Homo sapiens]              44   2e-04
gi|8923398 Ly1 antibody reactive homolog [Homo sapiens]                44   2e-04
gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]                       44   2e-04
gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]                       44   2e-04
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap...    44   2e-04
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap...    44   2e-04
gi|4557509 cylicin 2 [Homo sapiens]                                    43   3e-04
gi|9257180 adducin 2 isoform c [Homo sapiens]                          43   3e-04
gi|9257192 adducin 2 isoform a [Homo sapiens]                          43   3e-04

>gi|169183877 PREDICTED: similar to hCG1742476 [Homo sapiens]
          Length = 278

 Score =  555 bits (1429), Expect = e-158
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60
           MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE
Sbjct: 1   MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60

Query: 61  QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120
           QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK
Sbjct: 61  QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120

Query: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180
           KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA
Sbjct: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180

Query: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240
           VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG
Sbjct: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240

Query: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278
           RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV
Sbjct: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278


>gi|169179771 PREDICTED: similar to hCG1742476 [Homo sapiens]
          Length = 278

 Score =  555 bits (1429), Expect = e-158
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60
           MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE
Sbjct: 1   MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60

Query: 61  QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120
           QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK
Sbjct: 61  QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120

Query: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180
           KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA
Sbjct: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180

Query: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240
           VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG
Sbjct: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240

Query: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278
           RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV
Sbjct: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278


>gi|239743692 PREDICTED: hypothetical protein LOC402360 [Homo
           sapiens]
          Length = 278

 Score =  555 bits (1429), Expect = e-158
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60
           MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE
Sbjct: 1   MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60

Query: 61  QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120
           QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK
Sbjct: 61  QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120

Query: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180
           KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA
Sbjct: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180

Query: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240
           VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG
Sbjct: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240

Query: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278
           RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV
Sbjct: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278


>gi|32483374 nucleolar protein 5A [Homo sapiens]
          Length = 594

 Score =  325 bits (833), Expect = 3e-89
 Identities = 175/258 (67%), Positives = 199/258 (77%), Gaps = 28/258 (10%)

Query: 2   TKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQ 61
           T+GNTPKYGL+FHSTF G+AAA+NKGRIS+YLANKCSIAS+IDCF+EV  S+FGEKL+EQ
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQ 400

Query: 62  VEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQE----------------- 104
           VEERLSFYETGEI  K +DVMK  MVQAE+ AAEI RKLEKQE                 
Sbjct: 401 VEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEITRKLEKQEKKRLKKEKKRLAALALA 460

Query: 105 -------TPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSS 157
                  TPEEC + S KPKKKKKQKPQE PQENG++DPS SFSKP K+KSFSKE+L+SS
Sbjct: 461 SSENSSSTPEECEEMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSS 520

Query: 158 HREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAG 217
             EETAGS S+P RK S+PKEE VNDP+EAG+RS +KKK   S   ++E VSSGPEEA G
Sbjct: 521 DLEETAGSTSIPKRKKSTPKEETVNDPEEAGHRSGSKKKRKFS---KEEPVSSGPEEAVG 577

Query: 218 SKSSSKKKKKLHKVPQED 235
            KSSSKKKKK HK  QED
Sbjct: 578 -KSSSKKKKKFHKASQED 594



 Score = 29.6 bits (65), Expect = 3.0
 Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 143 PNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPS 202
           P K     KE +V +  EE A  I+   RK    K+E     KE       KK+      
Sbjct: 414 PRKNLDVMKEAMVQA--EEAAAEIT---RKLE--KQEKKRLKKE-------KKRLAALAL 459

Query: 203 KRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGGAHPTPRRHFPF 257
              E  SS PEE    + S K KKK  + PQE    NG      +   P++   F
Sbjct: 460 ASSENSSSTPEEC--EEMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSF 512


>gi|169204941 PREDICTED: similar to Nucleolar protein 5A [Homo
           sapiens]
          Length = 166

 Score =  167 bits (424), Expect = 7e-42
 Identities = 94/135 (69%), Positives = 104/135 (77%), Gaps = 5/135 (3%)

Query: 101 EKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHRE 160
           +   TPE C +TS KPKKKKKQKPQE PQE   +DPS SFSKP K+KSFSKE+L+SS  E
Sbjct: 37  DSSSTPERCEETSEKPKKKKKQKPQEVPQEK-TEDPSISFSKPKKKKSFSKEELMSSDLE 95

Query: 161 ETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKS 220
           ETAGS SL  RK SSPK E VNDP+EAGNRSV+KKKT  S   ++E VSSGPEEAAGSKS
Sbjct: 96  ETAGSTSLLKRKKSSPKTETVNDPEEAGNRSVSKKKTKFS---KEEPVSSGPEEAAGSKS 152

Query: 221 SSKKKKKLHKVPQED 235
           SS KKK  HK  QED
Sbjct: 153 SS-KKKMFHKEAQED 166


>gi|169205573 PREDICTED: similar to Nucleolar protein 5A [Homo
           sapiens]
          Length = 166

 Score =  167 bits (424), Expect = 7e-42
 Identities = 94/135 (69%), Positives = 104/135 (77%), Gaps = 5/135 (3%)

Query: 101 EKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHRE 160
           +   TPE C +TS KPKKKKKQKPQE PQE   +DPS SFSKP K+KSFSKE+L+SS  E
Sbjct: 37  DSSSTPERCEETSEKPKKKKKQKPQEVPQEK-TEDPSISFSKPKKKKSFSKEELMSSDLE 95

Query: 161 ETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKS 220
           ETAGS SL  RK SSPK E VNDP+EAGNRSV+KKKT  S   ++E VSSGPEEAAGSKS
Sbjct: 96  ETAGSTSLLKRKKSSPKTETVNDPEEAGNRSVSKKKTKFS---KEEPVSSGPEEAAGSKS 152

Query: 221 SSKKKKKLHKVPQED 235
           SS KKK  HK  QED
Sbjct: 153 SS-KKKMFHKEAQED 166


>gi|169203848 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 166

 Score =  167 bits (424), Expect = 7e-42
 Identities = 94/135 (69%), Positives = 104/135 (77%), Gaps = 5/135 (3%)

Query: 101 EKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHRE 160
           +   TPE C +TS KPKKKKKQKPQE PQE   +DPS SFSKP K+KSFSKE+L+SS  E
Sbjct: 37  DSSSTPERCEETSEKPKKKKKQKPQEVPQEK-TEDPSISFSKPKKKKSFSKEELMSSDLE 95

Query: 161 ETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKS 220
           ETAGS SL  RK SSPK E VNDP+EAGNRSV+KKKT  S   ++E VSSGPEEAAGSKS
Sbjct: 96  ETAGSTSLLKRKKSSPKTETVNDPEEAGNRSVSKKKTKFS---KEEPVSSGPEEAAGSKS 152

Query: 221 SSKKKKKLHKVPQED 235
           SS KKK  HK  QED
Sbjct: 153 SS-KKKMFHKEAQED 166


>gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens]
          Length = 529

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 17/199 (8%)

Query: 2   TKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQ 61
           ++ +TPKYGL++H++  GQ + ++KG+IS+ LA K  +A + D F E   S  G + + +
Sbjct: 331 SRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAK 390

Query: 62  VEERLSFYE---------TGEILSK-----KMDVMKTEMVQAEKTAAEIIRKLEKQETPE 107
           +E RL   E         TG+ L+K         +KT     + T     +K + ++  +
Sbjct: 391 LEARLRTLEDRGIRKISGTGKALAKTEKYEHKSEVKTYDPSGDSTLPTCSKKRKIEQVDK 450

Query: 108 ECAKTSVKPKKKK-KQKPQEAPQENGIKDPSNSFSKPNKR--KSFSKEKLVSSHREETAG 164
           E   T  K KK K K K +E  +E   ++   S  K  KR  K   KE+ +S     T+ 
Sbjct: 451 EDEITEKKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKKHIKEEPLSEEEPCTST 510

Query: 165 SISLPNRKTSSPKEEAVND 183
           +I+ P +K    K+    D
Sbjct: 511 AIASPEKKKKKKKKRENED 529


>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
          Length = 2468

 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 89  AEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKR-- 146
           AEK A ++  K  K++T ++  K   + KK++K+KP++   +   K P     KP K   
Sbjct: 621 AEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEV 680

Query: 147 KSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKE 206
           K   K+++    ++E    +     K  +P +E   + K+   + V  KK    P K  +
Sbjct: 681 KKEVKKEIKKEEKKEPKKEV-----KKETPPKEVKKEVKKEEKKEV--KKEEKEPKKEIK 733

Query: 207 LVSSGPEEAAGSKSSSKKKKKLH-KVPQEDES------ANGRPPSGG 246
            +    ++++   S +KK   L  KVP+++ES      A G+P   G
Sbjct: 734 KLPKDAKKSSTPLSEAKKPAALKPKVPKKEESVKKDSVAAGKPKEKG 780



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 10/141 (7%)

Query: 77  KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDP 136
           KK +V K    + +K   +  +K  K+ETP +  K  VK ++KK+ K +E       K+P
Sbjct: 676 KKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEE-------KEP 728

Query: 137 SNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEE-AVNDPKEAGNRSVTKK 195
                K  K    S   L S  ++  A    +P ++ S  K+  A   PKE G   V KK
Sbjct: 729 KKEIKKLPKDAKKSSTPL-SEAKKPAALKPKVPKKEESVKKDSVAAGKPKEKGKIKVIKK 787

Query: 196 KTGNSPSKRKELVSSGPEEAA 216
           + G +       V +G   AA
Sbjct: 788 E-GKAAEAVAAAVGTGATTAA 807



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 7/178 (3%)

Query: 78  KMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPS 137
           K    K + V+ E       +K EK++  +E AK   K   KK++KP++   +  +K   
Sbjct: 629 KPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEI 688

Query: 138 NSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK-TSSPKEEAVNDPKEAGNRSV---- 192
               K   +K   KE      ++E         +K    PK+E    PK+A   S     
Sbjct: 689 KKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLSE 748

Query: 193 TKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGGAHPT 250
            KK     P   K+  S   +  A  K   K+K K+  + +E ++A     + G   T
Sbjct: 749 AKKPAALKPKVPKKEESVKKDSVAAGK--PKEKGKIKVIKKEGKAAEAVAAAVGTGAT 804



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 21/181 (11%)

Query: 75  LSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEEC------------AKTSVKPKKKKKQ 122
           L ++ D  ++    A+   ++ +RK  K+ETPE              +K  V  KK K  
Sbjct: 535 LKQRADSRESLKPAAKPLPSKSVRKESKEETPEVTKVNHVEKPPKVESKEKVMVKKDKPI 594

Query: 123 KPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVN 182
           K +  P     + PS    +P+  K+   EK  +  + + A   ++  +K +  K E   
Sbjct: 595 KTETKPSVTEKEVPSK--EEPSPVKAEVAEKQATDVKPKAAKEKTV--KKETKVKPEDKK 650

Query: 183 DPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRP 242
           + KE   + V KK+   +P K++E     P++    K   K+ KK  K   + E     P
Sbjct: 651 EEKEKPKKEVAKKE-DKTPIKKEE----KPKKEEVKKEVKKEIKKEEKKEPKKEVKKETP 705

Query: 243 P 243
           P
Sbjct: 706 P 706



 Score = 30.4 bits (67), Expect = 1.8
 Identities = 46/207 (22%), Positives = 74/207 (35%), Gaps = 15/207 (7%)

Query: 47   AEVLMSIFGEKLQEQVEERLSFYETGEILSKKMD-VMKTEMVQAEKTAAEIIRKLEKQET 105
            A V  S F E   + V   L   E G   S ++D  +   +VQ   T  E      K+E 
Sbjct: 1555 ASVATSSFPEPTTDDVSPSLHA-EVGSPHSTEVDDSLSVSVVQTPTTFQETEMSPSKEEC 1613

Query: 106  PE--ECAKTSVKPKKKKKQKP-QEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREET 162
            P     +     PK  K + P Q+   E            P +  +    +    H    
Sbjct: 1614 PRPMSISPPDFSPKTAKSRTPVQDHRSEQSSMSIEFGQESPEQSLAMDFSRQSPDHPTVG 1673

Query: 163  AGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKK------KTGNSPSKRKELVSSGPEEAA 216
            AG + +    T +   E    P +  + S++ K       +    +   EL+S    EA+
Sbjct: 1674 AGVLHI----TENGPTEVDYSPSDMQDSSLSHKIPPMEEPSYTQDNDLSELISVSQVEAS 1729

Query: 217  GSKSSSKKKKKLHKVPQEDESANGRPP 243
             S SS+    ++    QED  ++  PP
Sbjct: 1730 PSTSSAHTPSQIASPLQEDTLSDVAPP 1756


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 16/166 (9%)

Query: 88  QAEKTAAEIIRKLEKQETP-EECAKTSVK--PKKKKKQKP---QEAPQENGIKDPSNSFS 141
           +A+    E ++  EK ++P +E AK   K  PKK++ + P   +E PQE  +K+P    +
Sbjct: 784 KAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKK-A 842

Query: 142 KPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSP 201
           +  K  +  K +     ++E A     P  K    KE AV  PKE      +K +     
Sbjct: 843 EEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKE------SKVEAKKEE 896

Query: 202 SKRKELVSSGPEEAAGS---KSSSKKKKKLHKVPQEDESANGRPPS 244
           ++ K+ V +  +EA      K  +K K+K     +E + A  + PS
Sbjct: 897 AEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPS 942



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 22/183 (12%)

Query: 75  LSKKMDV---MKTEMVQAEKTAAEIIRKLEKQETP-------EECAKTSVKPKKKKKQKP 124
           + KK +V   +K E    E    E  +K E+++ P       ++ +K    PKK+  +  
Sbjct: 814 IPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPK 873

Query: 125 QEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDP 184
            E  +E  ++ P  S  +  K ++  K+K+ +  +E  A      + K     E A  +P
Sbjct: 874 VEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEP 933

Query: 185 KEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKK---KKKLHKVPQEDESANGR 241
            +A      K K  + P+++KE   + PE+    +  +KK   K K     +ED+    +
Sbjct: 934 DDA------KAKEPSKPAEKKE---AAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSK 984

Query: 242 PPS 244
            PS
Sbjct: 985 EPS 987



 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 14/183 (7%)

Query: 88  QAEKTAAEIIRKLEKQETPEECAKTSVK------PKKKKKQKPQEAPQENGIKDPSNSFS 141
           +A+    E  +  EK ++PE+     VK      P K++ + P +   E           
Sbjct: 735 KAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVK 794

Query: 142 KPNKRKSFSKEKLVSSHRE-ETAGSISLPNRKTSSPKEEAVNDP--KEAGNRSVTKKKTG 198
            P K KS  KE   +  +E      +  P ++   P+E  V +P  K    ++    KT 
Sbjct: 795 SPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTE 854

Query: 199 NSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQED--ESANGRPPSGGAHPTPRRHFP 256
                +KE     P++ A      +KK+   + P+E   E+           PTP +  P
Sbjct: 855 EKKDSKKE---EAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAP 911

Query: 257 FRV 259
            +V
Sbjct: 912 AKV 914



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 22/203 (10%)

Query: 76  SKKMDVMKTEMVQAEKTAAEI---IRKLEKQETPEECAKTSVKPKKKKKQKPQEA--PQE 130
           +K  +  K+ + +  K+ AE    +++  K     +  + +  P K++ + P++A  P++
Sbjct: 598 AKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEK 657

Query: 131 NGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNR 190
              K P  + S P K ++ S EK  S  + E          K  SP +E    P++A + 
Sbjct: 658 EEAKSPEKAKS-PVKAEAKSPEKAKSPVKAEAKSP-----EKAKSPVKEEAKSPEKAKS- 710

Query: 191 SVTKKKTGNSPSKRKELV---SSGPEEAAGSKSSSKKKKKLHKVPQ-----EDESANGRP 242
               K+   SP K K  V   +  PE+A        K  +  K P+     + +S   + 
Sbjct: 711 --PVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKT 768

Query: 243 PSGGAHPTPRRHFPFRVLHPNKK 265
           P+     +P   FP +   P K+
Sbjct: 769 PAKEEARSPADKFPEKAKSPVKE 791



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 9/170 (5%)

Query: 77   KKMDVMKTEMVQAEKTAAEIIRKLEK-----QETPEECAKTSVKPKKKKKQKPQEAPQEN 131
            +K D  K E  + E    ++  K E      +E+  E  K   + KKK     +EAP + 
Sbjct: 855  EKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKV 914

Query: 132  GIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRS 191
             +K+ +    K    K    +       +      + P +K +  KEE    P+E     
Sbjct: 915  EVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDT--KEEKAKKPEEKPKTE 972

Query: 192  VTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGR 241
               K+   + S  KE      E+A  S S+ +K  K  +   ED++A G+
Sbjct: 973  AKAKEDDKTLS--KEPSKPKAEKAEKSSSTDQKDSKPPEKATEDKAAKGK 1020



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%)

Query: 56  EKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECA--KTS 113
           E+  E  EE        E  S + +       +A+  A     + E+ ++P E    + +
Sbjct: 491 EEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKA 550

Query: 114 VKPKKKKKQKPQEA--PQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNR 171
             P K++ + P EA  P++   K P+   S P K KS +KE+  S    ++      P +
Sbjct: 551 KSPAKEEAKSPPEAKSPEKEEAKSPAEVKS-PEKAKSPAKEEAKSPAEAKSPEKAKSPVK 609

Query: 172 KTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKV 231
           + +    EA +  KE        K    + S  KE   S PE+A   +    K  +  K 
Sbjct: 610 EEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKS-PEKAKSPEKEEAKSPEKAKS 668

Query: 232 PQEDES 237
           P + E+
Sbjct: 669 PVKAEA 674



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 88  QAEKTAAEIIRKLEKQETPE-ECAKTSVK---PKKKKKQKPQEAPQENGIKDPSNSFSKP 143
           +A+  A E  +   + ++PE E AK+  +   P+K K    +EA      K P  + S P
Sbjct: 549 KAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKS-P 607

Query: 144 NKRKSFSKEKLVSSHREETAGSISLPN-RKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPS 202
            K ++ S  +  S  +EE      + +  K  SP +E    P++A +    +K+   SP 
Sbjct: 608 VKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKS---PEKEEAKSPE 664

Query: 203 KRKELV---SSGPEEAAGSKSSSKKKKKLHKVPQEDES 237
           K K  V   +  PE+A     +  K  +  K P ++E+
Sbjct: 665 KAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEA 702



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 52/213 (24%), Positives = 81/213 (38%), Gaps = 38/213 (17%)

Query: 63  EERLSFYETGE-----ILSKKMDVMKTEMV--QAEKTAAEIIRK---------------- 99
           EE++   E  E     +  +  +   TE V  + EK A E   K                
Sbjct: 441 EEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEE 500

Query: 100 -----LEKQETPEECAKTSVK-----PKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSF 149
                 E+  +PE+ AK+ VK     P + K  + +EA     +K P  + S P K ++ 
Sbjct: 501 TKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKS-PAKEEAK 559

Query: 150 SKEKLVSSHREETAGSISLPN-RKTSSPKEEAVNDPKEAGNRSVTK---KKTGNSPSKRK 205
           S  +  S  +EE      + +  K  SP +E    P EA +    K   K+   SP++ K
Sbjct: 560 SPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAK 619

Query: 206 ELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESA 238
             V    +  A  KS  K K    +  +  E A
Sbjct: 620 SPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKA 652



 Score = 37.7 bits (86), Expect = 0.011
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 16/150 (10%)

Query: 101 EKQETPEECA--KTSVKPKKKKKQKPQEAPQENGIKDPSNSFSK-PNKRKSFSKEKLVSS 157
           E+ ++P E    + +  P K++ + P EA      K P    +K P + KS  KE+  S 
Sbjct: 570 EEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSP 629

Query: 158 HREETAGSISLPNR-------KTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELV-- 208
              ++      P +       K  SP++E    P++A +     K    SP K K  V  
Sbjct: 630 AEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKS---PVKAEAKSPEKAKSPVKA 686

Query: 209 -SSGPEEAAGSKSSSKKKKKLHKVPQEDES 237
            +  PE+A        K  +  K P ++E+
Sbjct: 687 EAKSPEKAKSPVKEEAKSPEKAKSPVKEEA 716



 Score = 33.1 bits (74), Expect = 0.27
 Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query: 57   KLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKP 116
            K++E+ E  +   +  ++ +KK +    + V   +  A    ++++   P+E  + + K 
Sbjct: 873  KVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKE 932

Query: 117  KKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSP 176
                K K    P E     P    +K  K K   ++    +  +E   ++S   ++ S P
Sbjct: 933  PDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLS---KEPSKP 989

Query: 177  KEEAVNDPKEAGNRSVTKKKTGNSPSKRKE 206
            K E      +A   S T +K    P K  E
Sbjct: 990  KAE------KAEKSSSTDQKDSKPPEKATE 1013


>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
           sapiens]
          Length = 783

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 30/193 (15%)

Query: 55  GEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSV 114
           GE L++Q EE+       E   K       E+ + E+T     ++++K+  P E    S 
Sbjct: 20  GETLRKQTEEK-------EKKEKPKSDKTEEIAEEEETVFPKAKQVKKKAEPSEVDMNSP 72

Query: 115 KPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTS 174
           K KK KK+   E P +N I   + S     K+K   ++K+VSS  ++          K  
Sbjct: 73  KSKKAKKK---EEPSQNDISPKTKSL---RKKKEPIEKKVVSSKTKKVT--------KNE 118

Query: 175 SPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSS--------GPEEAAGSKSSSKKKK 226
            P EE ++ PK    +   K+  G +  K  +L +          P EAA  +S+S+ ++
Sbjct: 119 EPSEEEIDAPKPKKMKK-EKEMNGETREKSPKLKNGFPHPEPDCNPSEAASEESNSEIEQ 177

Query: 227 KLHKVPQEDESAN 239
           ++    +E   +N
Sbjct: 178 EIPVEQKEGAFSN 190



 Score = 37.4 bits (85), Expect = 0.015
 Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 19/157 (12%)

Query: 100 LEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHR 159
           ++K ET  +  +   K +K K  K +E  +E              +   F K K V    
Sbjct: 17  MKKGETLRKQTEEKEKKEKPKSDKTEEIAEE--------------EETVFPKAKQVKKKA 62

Query: 160 EETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTG-----NSPSKRKELVSSGPEE 214
           E +   ++ P  K +  KEE   +      +S+ KKK        S   +K   +  P E
Sbjct: 63  EPSEVDMNSPKSKKAKKKEEPSQNDISPKTKSLRKKKEPIEKKVVSSKTKKVTKNEEPSE 122

Query: 215 AAGSKSSSKKKKKLHKVPQEDESANGRPPSGGAHPTP 251
                   KK KK  ++  E    + +  +G  HP P
Sbjct: 123 EEIDAPKPKKMKKEKEMNGETREKSPKLKNGFPHPEP 159


>gi|157738619 smoothelin-like 1 [Homo sapiens]
          Length = 512

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 16/190 (8%)

Query: 70  ETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECA-KTSVKPKKKKKQKPQEAP 128
           E  E   KK D  K E     +      RK E +  P+E   K S    +K+K + +EA 
Sbjct: 106 EDAEAELKKEDGEKEETTVGSQEMTG--RKEETKSEPKEAEEKESTLASEKQKAEEKEAK 163

Query: 129 QENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK--TSSPKEEAVNDPKE 186
            E+G K  +N   KP  + +  +E   ++ +EET        RK  ++ PKE+A ++  +
Sbjct: 164 PESGQKADANDRDKPEPKATVEEEDAKTASQEETG------QRKECSTEPKEKATDEEAK 217

Query: 187 AGNRSVTKKKTGNSPSKR---KELVSSGPEEAAGSKSSSKKKKKLH--KVPQEDESANGR 241
           A ++    +    +  K    KE    G +E A +K  ++  ++       +E E    +
Sbjct: 218 AESQKAVVEDEAKAEPKEPDGKEEAKHGAKEEADAKEEAEDAEEAEPGSPSEEQEQDVEK 277

Query: 242 PPSGGAHPTP 251
            P GGA   P
Sbjct: 278 EPEGGAGVIP 287



 Score = 35.0 bits (79), Expect = 0.072
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 16/169 (9%)

Query: 85  EMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQE--NGIKDPSNSFSK 142
           E  Q ++ + E   K   +E   E  K  V+ + K + K  +  +E  +G K+ +++  +
Sbjct: 196 ETGQRKECSTEPKEKATDEEAKAESQKAVVEDEAKAEPKEPDGKEEAKHGAKEEADAKEE 255

Query: 143 PNKRK-------SFSKEKLVSSHREETAGSI-SLPNRKTSSPKEEAVNDPKEA-GNRSVT 193
               +       S  +E+ V    E  AG I S P     SP  E  N   +  G   V 
Sbjct: 256 AEDAEEAEPGSPSEEQEQDVEKEPEGGAGVIPSSPEEWPESPTGEGHNLSTDGLGPDCVA 315

Query: 194 KKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRP 242
             +T  SPS  +   S  P+    S SS +KK+   K P+   SA  RP
Sbjct: 316 SGQT--SPSASESSPSDVPQSPPESPSSGEKKE---KAPERRVSAPARP 359


>gi|15559211 RE1-silencing transcription factor [Homo sapiens]
          Length = 1097

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 27/202 (13%)

Query: 76  SKKMDVMKTEMVQAEKTAAEIIRKL--EKQETPEECAKTSVKPKKKKKQKPQEAPQENGI 133
           +K MDV K ++ + +K  A++   +  EK E  +   K  V  KK +K    E    +  
Sbjct: 417 NKTMDVSKVKLKKTKKREADLPDNITNEKTEIEQTKIKGDVAGKKNEKSVKAEKRDVSKE 476

Query: 134 KDPSNSFS----KPNKRKS-----------------FSKEKLVSSHREETAGSISLP-NR 171
           K PSN+ S        RKS                 FSK K      E  + S+  P N 
Sbjct: 477 KKPSNNVSVIQVTTRTRKSVTEVKEMDVHTGSNSEKFSKTKKSKRKLEVDSHSLHGPVND 536

Query: 172 KTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKE---LVSSGPEEAAGSKSSSKKKKKL 228
           + SS K++   + K   N     K        +K+   +  S  ++   +KSS K  K  
Sbjct: 537 EESSTKKKKKVESKSKNNSQEVPKGDSKVEENKKQNTCMKKSTKKKTLKNKSSKKSSKPP 596

Query: 229 HKVPQEDESANGRPPSGGAHPT 250
            K P E  SA   PP  G  PT
Sbjct: 597 QKEPVEKGSAQMDPPQMGPAPT 618


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 41/233 (17%)

Query: 52  SIFGEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAK 111
           S F E  +E++++R       +I  +K+  MK +    +K      R  E++E+  E  +
Sbjct: 121 SAFLELKKEEIKQR-------QIEQEKLASMKKQDEDKDK------RDKEEKESSREKRE 167

Query: 112 TSVKPKKKKKQKPQEAPQENGIK-DPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPN 170
            S  P+++K + P    + + ++ +   S S+  + ++ S+    +  ++E    +  P+
Sbjct: 168 RSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPS 227

Query: 171 RKTSSP---------------KEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEA 215
            K   P               K E + +PKE      +KK+      K KE         
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKE------KEKEKTRPRSRSR 281

Query: 216 AGSKSSSKKKKKLHKVPQEDESANGRP------PSGGAHPTPRRHFPFRVLHP 262
           + S+S ++ +   H  P+    +  R       PS    P+PRR  P R + P
Sbjct: 282 SKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPP 334



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 21/197 (10%)

Query: 82  MKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENG-------IK 134
           +K   VQ   + ++I++  + +  PE    +  K  KK+K+K +  P+           +
Sbjct: 230 VKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTR 289

Query: 135 DPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTK 194
             S S ++P +R   S+ +  S  R  +      P R+T  P       P+   +RS   
Sbjct: 290 SRSPSHTRPRRRHR-SRSRSYSPRRRPSPRRRPSPRRRT--PPRRMPPPPRHRRSRS--- 343

Query: 195 KKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDES--ANGRPPSGGAHPTPR 252
                 P +R+   S+    ++ S SSS+ +    K P+   S     R  S  A P  R
Sbjct: 344 ------PVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRR 397

Query: 253 RHFPFRVLHPNKKFSHT 269
           RH P     P  K  H+
Sbjct: 398 RHRPSPPATPPPKTRHS 414



 Score = 34.7 bits (78), Expect = 0.094
 Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 11/150 (7%)

Query: 97  IRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQE--NGIKDPSNSFSKPNKRKSFSKEKL 154
           I++      P +    S  P  K++  P   P+   +    P    S   KR+S S   L
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPS---L 656

Query: 155 VSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEE 214
            S HR+ ++ S S    ++  P +     P+          +T +SP   +   SS P+ 
Sbjct: 657 SSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRA------PQTSSSPPPVRRGASSSPQR 710

Query: 215 AAGSKSSSKKKKKLHKVPQEDESANGRPPS 244
                 S++  +++ + P+  +      PS
Sbjct: 711 RQSPSPSTRPIRRVSRTPEPKKIKKAASPS 740



 Score = 32.7 bits (73), Expect = 0.36
 Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 17/164 (10%)

Query: 113 SVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
           S  P  +K+QK + +P+    + PS     P  R+  S        R  T      P R+
Sbjct: 528 SASPSPRKRQK-ETSPRGRRRRSPS----PPPTRRRRSPSPAPPPRRRRTP--TPPPRRR 580

Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVP 232
           T SP     +      +  + ++ + + P KR+      P +   S S   K++  H  P
Sbjct: 581 TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 640

Query: 233 QEDESA---NGRPPS------GGAHPTPRRHFPFRVLHPNKKFS 267
            +  S+     R PS       G+ P+ R     R   PNK+ S
Sbjct: 641 PKQRSSPVTKRRSPSLSSKHRKGSSPS-RSTREARSPQPNKRHS 683



 Score = 30.4 bits (67), Expect = 1.8
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 113 SVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
           S  P++++   P   P     + P     K     S    + VSS R  +        + 
Sbjct: 705 SSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKP 764

Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHK 230
            + P       P    + +V  KK   SP+       +  +E  G K   KK KK HK
Sbjct: 765 PAPPSPVQSQSPSTNWSPAVPVKKA-KSPTPSPSPPRNSDQEGGGKKKKKKKDKK-HK 820


>gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]
          Length = 490

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 24/192 (12%)

Query: 77  KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVK-PKKKKKQKPQEAPQENG--- 132
           +K    K +  QA KTA+     L K +   E   T+VK P+ KK+Q P+   ++ G   
Sbjct: 297 EKQKERKKKRQQARKTASV----LSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGRGK 352

Query: 133 --IKDPSNSFSK-----PNKRKSFSKEKL-VSSHREETAGSISLPNRKTSSPKEEAVNDP 184
             +K  + S  +     P  +K+ + EK+ +  H          PN  T   K+      
Sbjct: 353 AQVKATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPA 412

Query: 185 KEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPS 244
            E   ++   +  G SP K+ ++     EEA   KS S  KK   + P++ E+     PS
Sbjct: 413 SETP-KAAESETPGKSPEKKPKI----KEEAVKEKSPSLGKKDARQTPKKPEAKFFTTPS 467

Query: 245 GG---AHPTPRR 253
                A  TP++
Sbjct: 468 KSVRKASHTPKK 479



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 60/262 (22%), Positives = 110/262 (41%), Gaps = 35/262 (13%)

Query: 39  IASQIDCFAEVLMSI---FGEKLQEQVEE-RLSFYETGEILSKKMDVMKTEMVQ-AEKTA 93
           +  QI+   E ++++     EKL E+ E  +L F +T +  S  + +  + +    E T 
Sbjct: 219 VGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEK--SAALPIFSSFVSNWDEATK 276

Query: 94  AEIIRKLEKQETPEECAKTSVKPK--KKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSK 151
             ++ K +K+   +   +   K K  KKK+Q+ ++        D +        +K  SK
Sbjct: 277 RSLLNKKKKEARRKRRERNFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTVKKPESK 336

Query: 152 EKLVSSHREETAGSISLPNRKTSSPKEE-----------AVNDPKEAGNRSVTKKKTGNS 200
           ++    H ++  G      + T+  ++E             N+  E    +  KK    S
Sbjct: 337 KEQTPEHGKKKRGRGKAQVKATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKS 396

Query: 201 PS-------KRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGG---AHPT 250
           P+       KRK L +S   +AA S++  K  +K  K+  ++E+   + PS G   A  T
Sbjct: 397 PNPSTPRGKKRKALPASETPKAAESETPGKSPEKKPKI--KEEAVKEKSPSLGKKDARQT 454

Query: 251 PRRHFPFRVLHPNK---KFSHT 269
           P++        P+K   K SHT
Sbjct: 455 PKKPEAKFFTTPSKSVRKASHT 476


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 3/168 (1%)

Query: 98  RKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSS 157
           R  +K+    EC+  S  P +KKK+  ++  ++   +  S S  K   R   SK K    
Sbjct: 180 RSRKKRRLESECSCGSSSPLRKKKKSVKKHRRD---RSDSGSRRKRRHRSRSSKCKRKEK 236

Query: 158 HREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAG 217
           ++E+       P R++      + + P  + + S ++  +  SP  R E   +G + ++G
Sbjct: 237 NKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSG 296

Query: 218 SKSSSKKKKKLHKVPQEDESANGRPPSGGAHPTPRRHFPFRVLHPNKK 265
           S+S S         PQ +  +  R  + G  P      P +   P+ +
Sbjct: 297 SRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPR 344



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 26/138 (18%)

Query: 110 AKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLP 169
           +  S  PKKKKK+K                      R+S  K +L S   E + GS S  
Sbjct: 162 SSASPPPKKKKKKKG-------------------GHRRSRKKRRLES---ECSCGSSSPL 199

Query: 170 NRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPE---EAAGSKSSSKKKK 226
            +K  S K+    D  ++G+R   + ++ +S  KRKE          E+ G +S      
Sbjct: 200 RKKKKSVKKHR-RDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSG 258

Query: 227 KLHKVPQEDESANGRPPS 244
             H        ++ R PS
Sbjct: 259 SSHSPSLSSHYSDSRSPS 276


>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
          Length = 248

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 12/184 (6%)

Query: 60  EQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKK 119
           E+V+++L   +TG   SK +   + +M   E    E+ +  EK  +  E +    + KKK
Sbjct: 42  EEVKKQLENKKTG---SKALAEFEEKM--NENWKKELEKSREKLLSGNESSSKKRERKKK 96

Query: 120 KKQKPQEAPQENGIKDPSNSFS-------KPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
           +K+K   +   +   D S+S S       K  KR+   K +   S +  T  S S     
Sbjct: 97  RKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKES 156

Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVP 232
               K+      KE   RS++KK+  + P  +     S  E        +KKK++  +  
Sbjct: 157 VKKKKKSKDETEKEKDVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEERE 216

Query: 233 QEDE 236
           Q  E
Sbjct: 217 QAKE 220



 Score = 38.1 bits (87), Expect = 0.009
 Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 18/220 (8%)

Query: 29  ISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQ 88
           + + L NK + +  +  F E +   + ++L++  E+ LS  E+     ++    K +  +
Sbjct: 44  VKKQLENKKTGSKALAEFEEKMNENWKKELEKSREKLLSGNESSSKKRERKKKRKKKSCR 103

Query: 89  AEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKS 148
           +  +++         ++ +E  K   + KKKK +  + +       +  +  S   K+KS
Sbjct: 104 SSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKS 163

Query: 149 FSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELV 208
             +     + +E+   S+S   RK S P ++ ++   E+ + S  ++       +R E  
Sbjct: 164 KDE-----TEKEKDVRSLS-KKRKKSYPDDKPLS--SESSSESDYEEDVQAKKKRRCE-- 213

Query: 209 SSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGGAH 248
               E     +   KKKKK HK      S   +  SG +H
Sbjct: 214 ----EREQAKEKVKKKKKKQHK----KHSKKKKKKSGSSH 245


>gi|32528306 replication factor C large subunit [Homo sapiens]
          Length = 1147

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 10/156 (6%)

Query: 94  AEIIRKL-EKQETPEECAKTSVKPKKKKKQKPQEAP------QENGIKDPSNSFSKPNKR 146
           AE+ R+L E +E     A    +PK KK +K  EA       Q N  K   + +    K 
Sbjct: 213 AELERQLHEDEEFARTLAMLDEEPKTKKARKDTEAGETFSSVQANLSKAEKHKYPHKVKT 272

Query: 147 KSFSKEKLVSSHREET---AGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSK 203
              S E+   S R+++   +   S  + K+S+ K   V+ PK +   ++ K+K  +S  +
Sbjct: 273 AQVSDERKSYSPRKQSKYESSKESQQHSKSSADKIGEVSSPKASSKLAIMKRKEESSYKE 332

Query: 204 RKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESAN 239
            + + S   E A   K  +K  KK    P + ES +
Sbjct: 333 IEPVASKRKENAIKLKGETKTPKKTKSSPAKKESVS 368



 Score = 32.7 bits (73), Expect = 0.36
 Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 7/122 (5%)

Query: 47  AEVLMSIFGEKLQEQVEERLSFY----ETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEK 102
           A+ L+  +G K+   V ++ ++     ++G+  S K   + T+++  E     +IR +  
Sbjct: 426 AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID-EDGLLNLIRTMPG 484

Query: 103 QETPEECA-KTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSK-EKLVSSHRE 160
           +++  E A +T +K + K ++ PQ+  Q      PS   S+  K +  SK + L  + ++
Sbjct: 485 KKSKYEIAVETEMKKESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKK 544

Query: 161 ET 162
           ET
Sbjct: 545 ET 546



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 12/170 (7%)

Query: 77  KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDP 136
           +K    K  ++    + +E   +++  + P E    S KP K  +Q P     E   +D 
Sbjct: 56  QKQPSKKKRIIYDSDSESEETLQVKNAKKPPEKLPVSSKPGKISRQDPVTYISETDEEDD 115

Query: 137 -----SNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRS 191
                + S SK N R + S   L +S+ ++   +    N+  S  K    +     G  S
Sbjct: 116 FMCKKAASKSKENGRSTNSH--LGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGS 173

Query: 192 VTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKK-----KLHKVPQEDE 236
           V +       SKRKEL  +  E     ++ +K+ +     +L +   EDE
Sbjct: 174 VQRSNKKMVASKRKELSQNTDESGLNDEAIAKQLQLDEDAELERQLHEDE 223


>gi|15149465 caldesmon 1 isoform 5 [Homo sapiens]
          Length = 532

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 11/184 (5%)

Query: 59  QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKK 118
           +E+ E R   YE  E  +      K +   AE+   E   K E++E   +         K
Sbjct: 144 EEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQIK 203

Query: 119 KKKQKPQEAPQEN--GIKDPSNSFSKPNKRKS-FSKEKLVSSHREETAGSISLPNRKTSS 175
            +K K  + P+E      D    F++   +   F   KL     + T  + S P  + S 
Sbjct: 204 DEKIKKDKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKL-----KHTENTFSRPGGRASV 258

Query: 176 PKEEAVNDPK-EAGNR-SVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKK-KLHKVP 232
             +EA   P+ EAG R    +++ G + S+  E +    +EAA      KKK+ +  KV 
Sbjct: 259 DTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVL 318

Query: 233 QEDE 236
           +E+E
Sbjct: 319 EEEE 322


>gi|4826657 caldesmon 1 isoform 2 [Homo sapiens]
          Length = 538

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 11/184 (5%)

Query: 59  QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKK 118
           +E+ E R   YE  E  +      K +   AE+   E   K E++E   +         K
Sbjct: 150 EEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQIK 209

Query: 119 KKKQKPQEAPQEN--GIKDPSNSFSKPNKRKS-FSKEKLVSSHREETAGSISLPNRKTSS 175
            +K K  + P+E      D    F++   +   F   KL     + T  + S P  + S 
Sbjct: 210 DEKIKKDKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKL-----KHTENTFSRPGGRASV 264

Query: 176 PKEEAVNDPK-EAGNR-SVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKK-KLHKVP 232
             +EA   P+ EAG R    +++ G + S+  E +    +EAA      KKK+ +  KV 
Sbjct: 265 DTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVL 324

Query: 233 QEDE 236
           +E+E
Sbjct: 325 EEEE 328


>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
          Length = 1007

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 16/187 (8%)

Query: 90  EKTAAEIIRKLEKQETPEECAKTSVKPKKKK----KQKPQE------APQENGIKDPSNS 139
           EKT     ++ +K ++P + +K+  + +K K    +++ QE      +P ++ +K    S
Sbjct: 210 EKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKS 269

Query: 140 FSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGN 199
            SK  K+     E       +++   + L  R  S  +     + K   + +  +KK   
Sbjct: 270 KSKDRKKSPIINESRSRDRGKKSRSPVDL--RGKSKDRRSRSKERKSKRSETDKEKKPIK 327

Query: 200 SPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQ-EDESANGRPPSGGAHPTPRRHFPFR 258
           SPSK     SSG E  + S+   +  K+    P+  D+S   R P      + +   P R
Sbjct: 328 SPSKD---ASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSR 384

Query: 259 VLHPNKK 265
            L P ++
Sbjct: 385 TLSPGRR 391



 Score = 32.7 bits (73), Expect = 0.36
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 156 SSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEA 215
           S+    T G + L + K ++ K       +   +RS  KK  G     +++   S  +E 
Sbjct: 161 STRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSDKKKSKGGIEIVKEKTTRSKSKER 220

Query: 216 AGSKSSSKKKKKLHKVPQEDESANGRPPS 244
             SKS SK+ K       +D++   + P+
Sbjct: 221 KKSKSPSKRSK------SQDQARKSKSPT 243


>gi|224591430 Ly1 antibody reactive homolog [Homo sapiens]
          Length = 379

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 26/204 (12%)

Query: 51  MSIFGEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECA 110
           + +  E + +QV    S     E ++K+ D      V      AEI  K+     P    
Sbjct: 122 LKVHNESILDQVWNIFSEASNSEPVNKEQDQRPLHPVA--NPHAEISTKV-----PASKV 174

Query: 111 KTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPN 170
           K +V+ + + K+  +E  +E           +  KRK   KE  + +H+E +        
Sbjct: 175 KDAVEQQGEVKKNKRERKEE-----------RQKKRKREKKELKLENHQENSRNQKPKKR 223

Query: 171 RKTSSPKEEAVNDPK-----EAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSK---SSS 222
           +K      EA  +        AG RS  KK+  +S S+ +  V +G  +   S+    S 
Sbjct: 224 KKGQEADLEAGGEEVPEANGSAGKRSKKKKQRKDSASEEEARVGAGKRKRRHSEVETDSK 283

Query: 223 KKKKKLHKVPQEDESANGRPPSGG 246
           KKK KL + P+  E  +   P+ G
Sbjct: 284 KKKMKLPEHPEGGEPEDDEAPAKG 307


>gi|8923398 Ly1 antibody reactive homolog [Homo sapiens]
          Length = 379

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 26/204 (12%)

Query: 51  MSIFGEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECA 110
           + +  E + +QV    S     E ++K+ D      V      AEI  K+     P    
Sbjct: 122 LKVHNESILDQVWNIFSEASNSEPVNKEQDQRPLHPVA--NPHAEISTKV-----PASKV 174

Query: 111 KTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPN 170
           K +V+ + + K+  +E  +E           +  KRK   KE  + +H+E +        
Sbjct: 175 KDAVEQQGEVKKNKRERKEE-----------RQKKRKREKKELKLENHQENSRNQKPKKR 223

Query: 171 RKTSSPKEEAVNDPK-----EAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSK---SSS 222
           +K      EA  +        AG RS  KK+  +S S+ +  V +G  +   S+    S 
Sbjct: 224 KKGQEADLEAGGEEVPEANGSAGKRSKKKKQRKDSASEEEARVGAGKRKRRHSEVETDSK 283

Query: 223 KKKKKLHKVPQEDESANGRPPSGG 246
           KKK KL + P+  E  +   P+ G
Sbjct: 284 KKKMKLPEHPEGGEPEDDEAPAKG 307


>gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]
          Length = 558

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 33/208 (15%)

Query: 59  QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAK------- 111
           +E+ E R   YE  E  +      K +   AE+   E     EK+E  EE  K       
Sbjct: 144 EEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKE---DKEKEEEEEEKPKRGSIGEN 200

Query: 112 ------TSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKR--KSFSKEK---------- 153
                 T V+ K++K Q+ +   ++  IKD      K  K   KSF   K          
Sbjct: 201 QGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEVKSQN 260

Query: 154 --LVSSHREETAGSISLPNRKTSSPKEEAVNDPK-EAGNR-SVTKKKTGNSPSKRKELVS 209
              ++   + T  + S P  + S   +EA   P+ EAG R    +++ G + S+  E + 
Sbjct: 261 GEFMTHKLKHTENTFSRPGGRASVDTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLK 320

Query: 210 SGPEEAAGSKSSSKKKK-KLHKVPQEDE 236
              +EAA      KKK+ +  KV +E+E
Sbjct: 321 QKQQEAALELEELKKKREERRKVLEEEE 348


>gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]
          Length = 564

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 33/208 (15%)

Query: 59  QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAK------- 111
           +E+ E R   YE  E  +      K +   AE+   E     EK+E  EE  K       
Sbjct: 150 EEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKE---DKEKEEEEEEKPKRGSIGEN 206

Query: 112 ------TSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKR--KSFSKEK---------- 153
                 T V+ K++K Q+ +   ++  IKD      K  K   KSF   K          
Sbjct: 207 QGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEVKSQN 266

Query: 154 --LVSSHREETAGSISLPNRKTSSPKEEAVNDPK-EAGNR-SVTKKKTGNSPSKRKELVS 209
              ++   + T  + S P  + S   +EA   P+ EAG R    +++ G + S+  E + 
Sbjct: 267 GEFMTHKLKHTENTFSRPGGRASVDTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLK 326

Query: 210 SGPEEAAGSKSSSKKKK-KLHKVPQEDE 236
              +EAA      KKK+ +  KV +E+E
Sbjct: 327 QKQQEAALELEELKKKREERRKVLEEEE 354


>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
           sapiens]
          Length = 805

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 41/185 (22%), Positives = 94/185 (50%), Gaps = 21/185 (11%)

Query: 59  QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKK 118
           ++Q  ER++  E  E + K+ + +   +++A +   +++   EK+ TP E     ++PKK
Sbjct: 444 EKQQTERVT-KEMNEFIHKEQNSLS--LLEAREADGDVVN--EKKRTPNETTSV-LEPKK 497

Query: 119 KKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKE 178
           + K+K ++    +G    S+  S  N R S +   + SS    ++GS S  + ++SSPK 
Sbjct: 498 EHKEKEKQGRSRSG--SSSSGSSSSNSRTSSTSSTVSSSSYSSSSGS-SRTSSRSSSPKR 554

Query: 179 EAVNDPKEAGNRSVT---KKKTGNSPSKRKELVSSGP-----EEAAGSKSSSKKKKKLHK 230
           +     + + +RS T   ++    S S+R ++ S+       +    +++S +++++ ++
Sbjct: 555 K----KRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNR 610

Query: 231 VPQED 235
            P  +
Sbjct: 611 SPSRE 615



 Score = 38.5 bits (88), Expect = 0.007
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 113 SVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
           S  PK+KK+     +P     +  S S+S+  K +S      +   R     SI    R+
Sbjct: 549 SSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRR 608

Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRK------ELVSSGPEEAAGSKSSSKKKK 226
             SP  E       + +R   +     S  +RK       L  +  +    +K   +KK+
Sbjct: 609 NRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKE 668

Query: 227 KLHKVPQE 234
           +   + ++
Sbjct: 669 RSRSIDKD 676



 Score = 33.5 bits (75), Expect = 0.21
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 19/127 (14%)

Query: 98  RKLEKQETPEECAKTSVKPKKKKKQKPQE-----APQENGIKDPSNSFSKPNKRKSFSKE 152
           R ++K    ++  +   + K+K+KQK +E     + Q++ +K    S    ++  S S +
Sbjct: 671 RSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVK 730

Query: 153 KLVSSHREETAGSISLPNRKTS--------------SPKEEAVNDPKEAGNRSVTKKKTG 198
            +    R+++  S +  ++K S              S KE+    PK + +RSV K +  
Sbjct: 731 IIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRS 790

Query: 199 NSPSKRK 205
              + RK
Sbjct: 791 GKKASRK 797



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 11/155 (7%)

Query: 77  KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDP 136
           K+M+  K +  +  K   E I K +   +  E  +       +KK+ P E      + +P
Sbjct: 439 KQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNET---TSVLEP 495

Query: 137 SNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKK 196
                   K++   KEK   S    ++   S  N +TSS      +    + + S     
Sbjct: 496 --------KKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSS 547

Query: 197 TGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKV 231
             +SP ++K    S        +S S+   +  K+
Sbjct: 548 RSSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKI 582



 Score = 28.5 bits (62), Expect = 6.8
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 90  EKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSF 149
           EK   E  +KLEK+   ++ ++ S    KK+K+  ++A   +G + P  S    ++ +  
Sbjct: 241 EKMEREKQKKLEKERMEQQRSQLS----KKEKKATEDAEGGDGPRLPQRSKFDSDEEEED 296

Query: 150 SKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTK 194
           ++    +S  + T     +P  + S P  E   + KE     +TK
Sbjct: 297 TENVEAASSGKVTRSPSPVPQEEHSDP--EMTEEEKEYQMMLLTK 339



 Score = 28.5 bits (62), Expect = 6.8
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 21/134 (15%)

Query: 101 EKQETPEECAKTSVKPKKKK---KQKPQEAPQENGIKDPSN-SFSKPNKRKSFSKEKLVS 156
           ++QE  +E +++  K +KKK   +++ Q+  +E   ++  +  FS  + R    K K  S
Sbjct: 661 KEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRL---KRKRES 717

Query: 157 SHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAA 216
                 +GSIS+   +  S ++   +  K++      KK +G+  S R    S G     
Sbjct: 718 ERTFSRSGSISVKIIRHDSRQDSKKSTTKDS------KKHSGSDSSGRSSSESPG----- 766

Query: 217 GSKSSSKKKKKLHK 230
              SS +KK K  K
Sbjct: 767 ---SSKEKKAKKPK 777


>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
           sapiens]
          Length = 805

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 41/185 (22%), Positives = 94/185 (50%), Gaps = 21/185 (11%)

Query: 59  QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKK 118
           ++Q  ER++  E  E + K+ + +   +++A +   +++   EK+ TP E     ++PKK
Sbjct: 444 EKQQTERVT-KEMNEFIHKEQNSLS--LLEAREADGDVVN--EKKRTPNETTSV-LEPKK 497

Query: 119 KKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKE 178
           + K+K ++    +G    S+  S  N R S +   + SS    ++GS S  + ++SSPK 
Sbjct: 498 EHKEKEKQGRSRSG--SSSSGSSSSNSRTSSTSSTVSSSSYSSSSGS-SRTSSRSSSPKR 554

Query: 179 EAVNDPKEAGNRSVT---KKKTGNSPSKRKELVSSGP-----EEAAGSKSSSKKKKKLHK 230
           +     + + +RS T   ++    S S+R ++ S+       +    +++S +++++ ++
Sbjct: 555 K----KRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNR 610

Query: 231 VPQED 235
            P  +
Sbjct: 611 SPSRE 615



 Score = 38.5 bits (88), Expect = 0.007
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 113 SVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
           S  PK+KK+     +P     +  S S+S+  K +S      +   R     SI    R+
Sbjct: 549 SSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRR 608

Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRK------ELVSSGPEEAAGSKSSSKKKK 226
             SP  E       + +R   +     S  +RK       L  +  +    +K   +KK+
Sbjct: 609 NRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKE 668

Query: 227 KLHKVPQE 234
           +   + ++
Sbjct: 669 RSRSIDKD 676



 Score = 33.5 bits (75), Expect = 0.21
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 19/127 (14%)

Query: 98  RKLEKQETPEECAKTSVKPKKKKKQKPQE-----APQENGIKDPSNSFSKPNKRKSFSKE 152
           R ++K    ++  +   + K+K+KQK +E     + Q++ +K    S    ++  S S +
Sbjct: 671 RSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVK 730

Query: 153 KLVSSHREETAGSISLPNRKTS--------------SPKEEAVNDPKEAGNRSVTKKKTG 198
            +    R+++  S +  ++K S              S KE+    PK + +RSV K +  
Sbjct: 731 IIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRS 790

Query: 199 NSPSKRK 205
              + RK
Sbjct: 791 GKKASRK 797



 Score = 30.8 bits (68), Expect = 1.4
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 11/155 (7%)

Query: 77  KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDP 136
           K+M+  K +  +  K   E I K +   +  E  +       +KK+ P E      + +P
Sbjct: 439 KQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNET---TSVLEP 495

Query: 137 SNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKK 196
                   K++   KEK   S    ++   S  N +TSS      +    + + S     
Sbjct: 496 --------KKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSS 547

Query: 197 TGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKV 231
             +SP ++K    S        +S S+   +  K+
Sbjct: 548 RSSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKI 582



 Score = 28.5 bits (62), Expect = 6.8
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)

Query: 90  EKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSF 149
           EK   E  +KLEK+   ++ ++ S    KK+K+  ++A   +G + P  S    ++ +  
Sbjct: 241 EKMEREKQKKLEKERMEQQRSQLS----KKEKKATEDAEGGDGPRLPQRSKFDSDEEEED 296

Query: 150 SKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTK 194
           ++    +S  + T     +P  + S P  E   + KE     +TK
Sbjct: 297 TENVEAASSGKVTRSPSPVPQEEHSDP--EMTEEEKEYQMMLLTK 339



 Score = 28.5 bits (62), Expect = 6.8
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 21/134 (15%)

Query: 101 EKQETPEECAKTSVKPKKKK---KQKPQEAPQENGIKDPSN-SFSKPNKRKSFSKEKLVS 156
           ++QE  +E +++  K +KKK   +++ Q+  +E   ++  +  FS  + R    K K  S
Sbjct: 661 KEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRL---KRKRES 717

Query: 157 SHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAA 216
                 +GSIS+   +  S ++   +  K++      KK +G+  S R    S G     
Sbjct: 718 ERTFSRSGSISVKIIRHDSRQDSKKSTTKDS------KKHSGSDSSGRSSSESPG----- 766

Query: 217 GSKSSSKKKKKLHK 230
              SS +KK K  K
Sbjct: 767 ---SSKEKKAKKPK 777


>gi|4557509 cylicin 2 [Homo sapiens]
          Length = 348

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 12/223 (5%)

Query: 24  RNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERLSFYETGEILSKKMDVMK 83
           + + + SQ   N  SI  +     +    ++  +   ++ ER S Y    + +++  +  
Sbjct: 46  KRRSKPSQIRDNTVSIIDEEQLRGDRRQPLWMYRSLMRISERPSVY----LAARRQPLKP 101

Query: 84  TEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKP 143
           T  V+ +  AAEI +K E + T ++   +  + K+ KK   +    E G ++  ++    
Sbjct: 102 TRTVEVDSKAAEIGKKGEDKTTQKDTTDSESELKQGKKDSKKGKDIEKGKEEKLDAKKDS 161

Query: 144 NK-RKSFSKEKLVSSHREETAGSISLPNRK----TSSPKEEAVNDPKEAGNRSVTKKKTG 198
            K +K   K K  ++  E+  G     N+K    ++  K+ A     E G      KK  
Sbjct: 162 KKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKDSATESEGEKGGTEKDSKKGK 221

Query: 199 NSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGR 241
               K K+         A  K     KK  +K    DES + +
Sbjct: 222 KDSKKGKDSAIELQAVKADEKKDEDGKKDANK---GDESKDAK 261



 Score = 28.9 bits (63), Expect = 5.2
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 191 SVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGGA 247
           S ++ K G   SK+ + +  G EE   +K  SKK KK      +D +       GGA
Sbjct: 130 SESELKQGKKDSKKGKDIEKGKEEKLDAKKDSKKGKK-DAEKGKDSATESEDEKGGA 185


>gi|9257180 adducin 2 isoform c [Homo sapiens]
          Length = 420

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 12/206 (5%)

Query: 24  RNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERLSFYETGEILSKKMDVMK 83
           ++ G  SQ LA+  +  S+       LMS   E  ++  EE +      ++  ++++  K
Sbjct: 205 KSAGPQSQLLASVIAEKSRSPSTESQLMSKGDEDTKDDSEETVP-NPFSQLTDQELEEYK 263

Query: 84  TEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKP-QEAPQENGIKDPSNSFSK 142
            E+   E+   E+    EK+  PEE    +        Q P +EA  ++ +  PS S  +
Sbjct: 264 KEV---ERKKLELDG--EKETAPEEPGSPAKSAPASPVQSPAKEAETKSPLVSPSKSLEE 318

Query: 143 PNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPS 202
             K+   SK         +  G + +  R+     EE ++   +  ++  T   T    S
Sbjct: 319 GTKKTETSKAATTEPETTQPEGVV-VNGREEEQTAEEILS---KGLSQMTTSADTDVDTS 374

Query: 203 KRK-ELVSSGPEEAAGSKSSSKKKKK 227
           K K E V+SGP    GS S S  KKK
Sbjct: 375 KDKTESVTSGPMSPEGSPSKSPSKKK 400


>gi|9257192 adducin 2 isoform a [Homo sapiens]
          Length = 726

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 12/206 (5%)

Query: 24  RNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERLSFYETGEILSKKMDVMK 83
           ++ G  SQ LA+  +  S+       LMS   E  ++  EE +      ++  ++++  K
Sbjct: 511 KSAGPQSQLLASVIAEKSRSPSTESQLMSKGDEDTKDDSEETVP-NPFSQLTDQELEEYK 569

Query: 84  TEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKP-QEAPQENGIKDPSNSFSK 142
            E+   E+   E+    EK+  PEE    +        Q P +EA  ++ +  PS S  +
Sbjct: 570 KEV---ERKKLELDG--EKETAPEEPGSPAKSAPASPVQSPAKEAETKSPLVSPSKSLEE 624

Query: 143 PNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPS 202
             K+   SK         +  G + +  R+     EE ++   +  ++  T   T    S
Sbjct: 625 GTKKTETSKAATTEPETTQPEGVV-VNGREEEQTAEEILS---KGLSQMTTSADTDVDTS 680

Query: 203 KRK-ELVSSGPEEAAGSKSSSKKKKK 227
           K K E V+SGP    GS S S  KKK
Sbjct: 681 KDKTESVTSGPMSPEGSPSKSPSKKK 706


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.306    0.123    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,977,113
Number of Sequences: 37866
Number of extensions: 606846
Number of successful extensions: 5204
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 664
Number of HSP's that attempted gapping in prelim test: 3259
Number of HSP's gapped (non-prelim): 1889
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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