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Search of human proteins with 239743692
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743692 PREDICTED: hypothetical protein LOC402360 [Homo
sapiens]
(278 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169183877 PREDICTED: similar to hCG1742476 [Homo sapiens] 555 e-158
gi|169179771 PREDICTED: similar to hCG1742476 [Homo sapiens] 555 e-158
gi|239743692 PREDICTED: hypothetical protein LOC402360 [Homo sap... 555 e-158
gi|32483374 nucleolar protein 5A [Homo sapiens] 325 3e-89
gi|169204941 PREDICTED: similar to Nucleolar protein 5A [Homo sa... 167 7e-42
gi|169205573 PREDICTED: similar to Nucleolar protein 5A [Homo sa... 167 7e-42
gi|169203848 PREDICTED: hypothetical protein [Homo sapiens] 167 7e-42
gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens] 77 1e-14
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 52 6e-07
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens] 51 1e-06
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi... 51 1e-06
gi|157738619 smoothelin-like 1 [Homo sapiens] 51 1e-06
gi|15559211 RE1-silencing transcription factor [Homo sapiens] 49 4e-06
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 49 5e-06
gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens] 46 3e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 46 4e-05
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 46 4e-05
gi|32528306 replication factor C large subunit [Homo sapiens] 45 5e-05
gi|15149465 caldesmon 1 isoform 5 [Homo sapiens] 44 1e-04
gi|4826657 caldesmon 1 isoform 2 [Homo sapiens] 44 1e-04
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 44 2e-04
gi|224591430 Ly1 antibody reactive homolog [Homo sapiens] 44 2e-04
gi|8923398 Ly1 antibody reactive homolog [Homo sapiens] 44 2e-04
gi|15149463 caldesmon 1 isoform 4 [Homo sapiens] 44 2e-04
gi|15149467 caldesmon 1 isoform 3 [Homo sapiens] 44 2e-04
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 44 2e-04
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 44 2e-04
gi|4557509 cylicin 2 [Homo sapiens] 43 3e-04
gi|9257180 adducin 2 isoform c [Homo sapiens] 43 3e-04
gi|9257192 adducin 2 isoform a [Homo sapiens] 43 3e-04
>gi|169183877 PREDICTED: similar to hCG1742476 [Homo sapiens]
Length = 278
Score = 555 bits (1429), Expect = e-158
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60
MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE
Sbjct: 1 MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60
Query: 61 QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120
QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK
Sbjct: 61 QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120
Query: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180
KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA
Sbjct: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180
Query: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240
VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG
Sbjct: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240
Query: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278
RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV
Sbjct: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278
>gi|169179771 PREDICTED: similar to hCG1742476 [Homo sapiens]
Length = 278
Score = 555 bits (1429), Expect = e-158
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60
MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE
Sbjct: 1 MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60
Query: 61 QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120
QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK
Sbjct: 61 QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120
Query: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180
KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA
Sbjct: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180
Query: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240
VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG
Sbjct: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240
Query: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278
RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV
Sbjct: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278
>gi|239743692 PREDICTED: hypothetical protein LOC402360 [Homo
sapiens]
Length = 278
Score = 555 bits (1429), Expect = e-158
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60
MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE
Sbjct: 1 MTKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQE 60
Query: 61 QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120
QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK
Sbjct: 61 QVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKK 120
Query: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180
KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA
Sbjct: 121 KQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEA 180
Query: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240
VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG
Sbjct: 181 VNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANG 240
Query: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278
RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV
Sbjct: 241 RPPSGGAHPTPRRHFPFRVLHPNKKFSHTKHIVNPKAV 278
>gi|32483374 nucleolar protein 5A [Homo sapiens]
Length = 594
Score = 325 bits (833), Expect = 3e-89
Identities = 175/258 (67%), Positives = 199/258 (77%), Gaps = 28/258 (10%)
Query: 2 TKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQ 61
T+GNTPKYGL+FHSTF G+AAA+NKGRIS+YLANKCSIAS+IDCF+EV S+FGEKL+EQ
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQ 400
Query: 62 VEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQE----------------- 104
VEERLSFYETGEI K +DVMK MVQAE+ AAEI RKLEKQE
Sbjct: 401 VEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEITRKLEKQEKKRLKKEKKRLAALALA 460
Query: 105 -------TPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSS 157
TPEEC + S KPKKKKKQKPQE PQENG++DPS SFSKP K+KSFSKE+L+SS
Sbjct: 461 SSENSSSTPEECEEMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSFSKEELMSS 520
Query: 158 HREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAG 217
EETAGS S+P RK S+PKEE VNDP+EAG+RS +KKK S ++E VSSGPEEA G
Sbjct: 521 DLEETAGSTSIPKRKKSTPKEETVNDPEEAGHRSGSKKKRKFS---KEEPVSSGPEEAVG 577
Query: 218 SKSSSKKKKKLHKVPQED 235
KSSSKKKKK HK QED
Sbjct: 578 -KSSSKKKKKFHKASQED 594
Score = 29.6 bits (65), Expect = 3.0
Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 16/115 (13%)
Query: 143 PNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPS 202
P K KE +V + EE A I+ RK K+E KE KK+
Sbjct: 414 PRKNLDVMKEAMVQA--EEAAAEIT---RKLE--KQEKKRLKKE-------KKRLAALAL 459
Query: 203 KRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGGAHPTPRRHFPF 257
E SS PEE + S K KKK + PQE NG + P++ F
Sbjct: 460 ASSENSSSTPEEC--EEMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSF 512
>gi|169204941 PREDICTED: similar to Nucleolar protein 5A [Homo
sapiens]
Length = 166
Score = 167 bits (424), Expect = 7e-42
Identities = 94/135 (69%), Positives = 104/135 (77%), Gaps = 5/135 (3%)
Query: 101 EKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHRE 160
+ TPE C +TS KPKKKKKQKPQE PQE +DPS SFSKP K+KSFSKE+L+SS E
Sbjct: 37 DSSSTPERCEETSEKPKKKKKQKPQEVPQEK-TEDPSISFSKPKKKKSFSKEELMSSDLE 95
Query: 161 ETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKS 220
ETAGS SL RK SSPK E VNDP+EAGNRSV+KKKT S ++E VSSGPEEAAGSKS
Sbjct: 96 ETAGSTSLLKRKKSSPKTETVNDPEEAGNRSVSKKKTKFS---KEEPVSSGPEEAAGSKS 152
Query: 221 SSKKKKKLHKVPQED 235
SS KKK HK QED
Sbjct: 153 SS-KKKMFHKEAQED 166
>gi|169205573 PREDICTED: similar to Nucleolar protein 5A [Homo
sapiens]
Length = 166
Score = 167 bits (424), Expect = 7e-42
Identities = 94/135 (69%), Positives = 104/135 (77%), Gaps = 5/135 (3%)
Query: 101 EKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHRE 160
+ TPE C +TS KPKKKKKQKPQE PQE +DPS SFSKP K+KSFSKE+L+SS E
Sbjct: 37 DSSSTPERCEETSEKPKKKKKQKPQEVPQEK-TEDPSISFSKPKKKKSFSKEELMSSDLE 95
Query: 161 ETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKS 220
ETAGS SL RK SSPK E VNDP+EAGNRSV+KKKT S ++E VSSGPEEAAGSKS
Sbjct: 96 ETAGSTSLLKRKKSSPKTETVNDPEEAGNRSVSKKKTKFS---KEEPVSSGPEEAAGSKS 152
Query: 221 SSKKKKKLHKVPQED 235
SS KKK HK QED
Sbjct: 153 SS-KKKMFHKEAQED 166
>gi|169203848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 167 bits (424), Expect = 7e-42
Identities = 94/135 (69%), Positives = 104/135 (77%), Gaps = 5/135 (3%)
Query: 101 EKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHRE 160
+ TPE C +TS KPKKKKKQKPQE PQE +DPS SFSKP K+KSFSKE+L+SS E
Sbjct: 37 DSSSTPERCEETSEKPKKKKKQKPQEVPQEK-TEDPSISFSKPKKKKSFSKEELMSSDLE 95
Query: 161 ETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKS 220
ETAGS SL RK SSPK E VNDP+EAGNRSV+KKKT S ++E VSSGPEEAAGSKS
Sbjct: 96 ETAGSTSLLKRKKSSPKTETVNDPEEAGNRSVSKKKTKFS---KEEPVSSGPEEAAGSKS 152
Query: 221 SSKKKKKLHKVPQED 235
SS KKK HK QED
Sbjct: 153 SS-KKKMFHKEAQED 166
>gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens]
Length = 529
Score = 77.4 bits (189), Expect = 1e-14
Identities = 58/199 (29%), Positives = 96/199 (48%), Gaps = 17/199 (8%)
Query: 2 TKGNTPKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQ 61
++ +TPKYGL++H++ GQ + ++KG+IS+ LA K +A + D F E S G + + +
Sbjct: 331 SRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAK 390
Query: 62 VEERLSFYE---------TGEILSK-----KMDVMKTEMVQAEKTAAEIIRKLEKQETPE 107
+E RL E TG+ L+K +KT + T +K + ++ +
Sbjct: 391 LEARLRTLEDRGIRKISGTGKALAKTEKYEHKSEVKTYDPSGDSTLPTCSKKRKIEQVDK 450
Query: 108 ECAKTSVKPKKKK-KQKPQEAPQENGIKDPSNSFSKPNKR--KSFSKEKLVSSHREETAG 164
E T K KK K K K +E +E ++ S K KR K KE+ +S T+
Sbjct: 451 EDEITEKKAKKAKIKVKVEEEEEEKVAEEEETSVKKKKKRGKKKHIKEEPLSEEEPCTST 510
Query: 165 SISLPNRKTSSPKEEAVND 183
+I+ P +K K+ D
Sbjct: 511 AIASPEKKKKKKKKRENED 529
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 52.0 bits (123), Expect = 6e-07
Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 16/167 (9%)
Query: 89 AEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKR-- 146
AEK A ++ K K++T ++ K + KK++K+KP++ + K P KP K
Sbjct: 621 AEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEV 680
Query: 147 KSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKE 206
K K+++ ++E + K +P +E + K+ + V KK P K +
Sbjct: 681 KKEVKKEIKKEEKKEPKKEV-----KKETPPKEVKKEVKKEEKKEV--KKEEKEPKKEIK 733
Query: 207 LVSSGPEEAAGSKSSSKKKKKLH-KVPQEDES------ANGRPPSGG 246
+ ++++ S +KK L KVP+++ES A G+P G
Sbjct: 734 KLPKDAKKSSTPLSEAKKPAALKPKVPKKEESVKKDSVAAGKPKEKG 780
Score = 43.5 bits (101), Expect = 2e-04
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 10/141 (7%)
Query: 77 KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDP 136
KK +V K + +K + +K K+ETP + K VK ++KK+ K +E K+P
Sbjct: 676 KKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEE-------KEP 728
Query: 137 SNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEE-AVNDPKEAGNRSVTKK 195
K K S L S ++ A +P ++ S K+ A PKE G V KK
Sbjct: 729 KKEIKKLPKDAKKSSTPL-SEAKKPAALKPKVPKKEESVKKDSVAAGKPKEKGKIKVIKK 787
Query: 196 KTGNSPSKRKELVSSGPEEAA 216
+ G + V +G AA
Sbjct: 788 E-GKAAEAVAAAVGTGATTAA 807
Score = 43.1 bits (100), Expect = 3e-04
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 7/178 (3%)
Query: 78 KMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPS 137
K K + V+ E +K EK++ +E AK K KK++KP++ + +K
Sbjct: 629 KPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKEVKKEI 688
Query: 138 NSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK-TSSPKEEAVNDPKEAGNRSV---- 192
K +K KE ++E +K PK+E PK+A S
Sbjct: 689 KKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIKKLPKDAKKSSTPLSE 748
Query: 193 TKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGGAHPT 250
KK P K+ S + A K K+K K+ + +E ++A + G T
Sbjct: 749 AKKPAALKPKVPKKEESVKKDSVAAGK--PKEKGKIKVIKKEGKAAEAVAAAVGTGAT 804
Score = 39.7 bits (91), Expect = 0.003
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 75 LSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEEC------------AKTSVKPKKKKKQ 122
L ++ D ++ A+ ++ +RK K+ETPE +K V KK K
Sbjct: 535 LKQRADSRESLKPAAKPLPSKSVRKESKEETPEVTKVNHVEKPPKVESKEKVMVKKDKPI 594
Query: 123 KPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVN 182
K + P + PS +P+ K+ EK + + + A ++ +K + K E
Sbjct: 595 KTETKPSVTEKEVPSK--EEPSPVKAEVAEKQATDVKPKAAKEKTV--KKETKVKPEDKK 650
Query: 183 DPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRP 242
+ KE + V KK+ +P K++E P++ K K+ KK K + E P
Sbjct: 651 EEKEKPKKEVAKKE-DKTPIKKEE----KPKKEEVKKEVKKEIKKEEKKEPKKEVKKETP 705
Query: 243 P 243
P
Sbjct: 706 P 706
Score = 30.4 bits (67), Expect = 1.8
Identities = 46/207 (22%), Positives = 74/207 (35%), Gaps = 15/207 (7%)
Query: 47 AEVLMSIFGEKLQEQVEERLSFYETGEILSKKMD-VMKTEMVQAEKTAAEIIRKLEKQET 105
A V S F E + V L E G S ++D + +VQ T E K+E
Sbjct: 1555 ASVATSSFPEPTTDDVSPSLHA-EVGSPHSTEVDDSLSVSVVQTPTTFQETEMSPSKEEC 1613
Query: 106 PE--ECAKTSVKPKKKKKQKP-QEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREET 162
P + PK K + P Q+ E P + + + H
Sbjct: 1614 PRPMSISPPDFSPKTAKSRTPVQDHRSEQSSMSIEFGQESPEQSLAMDFSRQSPDHPTVG 1673
Query: 163 AGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKK------KTGNSPSKRKELVSSGPEEAA 216
AG + + T + E P + + S++ K + + EL+S EA+
Sbjct: 1674 AGVLHI----TENGPTEVDYSPSDMQDSSLSHKIPPMEEPSYTQDNDLSELISVSQVEAS 1729
Query: 217 GSKSSSKKKKKLHKVPQEDESANGRPP 243
S SS+ ++ QED ++ PP
Sbjct: 1730 PSTSSAHTPSQIASPLQEDTLSDVAPP 1756
>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
Length = 1020
Score = 51.2 bits (121), Expect = 1e-06
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 88 QAEKTAAEIIRKLEKQETP-EECAKTSVK--PKKKKKQKP---QEAPQENGIKDPSNSFS 141
+A+ E ++ EK ++P +E AK K PKK++ + P +E PQE +K+P +
Sbjct: 784 KAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKK-A 842
Query: 142 KPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSP 201
+ K + K + ++E A P K KE AV PKE +K +
Sbjct: 843 EEEKAPATPKTEEKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKE------SKVEAKKEE 896
Query: 202 SKRKELVSSGPEEAAGS---KSSSKKKKKLHKVPQEDESANGRPPS 244
++ K+ V + +EA K +K K+K +E + A + PS
Sbjct: 897 AEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEPDDAKAKEPS 942
Score = 43.9 bits (102), Expect = 2e-04
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 75 LSKKMDV---MKTEMVQAEKTAAEIIRKLEKQETP-------EECAKTSVKPKKKKKQKP 124
+ KK +V +K E E E +K E+++ P ++ +K PKK+ +
Sbjct: 814 IPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTEEKKDSKKEEAPKKEAPKPK 873
Query: 125 QEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDP 184
E +E ++ P S + K ++ K+K+ + +E A + K E A +P
Sbjct: 874 VEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKEP 933
Query: 185 KEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKK---KKKLHKVPQEDESANGR 241
+A K K + P+++KE + PE+ + +KK K K +ED+ +
Sbjct: 934 DDA------KAKEPSKPAEKKE---AAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSK 984
Query: 242 PPS 244
PS
Sbjct: 985 EPS 987
Score = 42.4 bits (98), Expect = 5e-04
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 14/183 (7%)
Query: 88 QAEKTAAEIIRKLEKQETPEECAKTSVK------PKKKKKQKPQEAPQENGIKDPSNSFS 141
+A+ E + EK ++PE+ VK P K++ + P + E
Sbjct: 735 KAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVK 794
Query: 142 KPNKRKSFSKEKLVSSHRE-ETAGSISLPNRKTSSPKEEAVNDP--KEAGNRSVTKKKTG 198
P K KS KE + +E + P ++ P+E V +P K ++ KT
Sbjct: 795 SPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATPKTE 854
Query: 199 NSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQED--ESANGRPPSGGAHPTPRRHFP 256
+KE P++ A +KK+ + P+E E+ PTP + P
Sbjct: 855 EKKDSKKE---EAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAP 911
Query: 257 FRV 259
+V
Sbjct: 912 AKV 914
Score = 41.2 bits (95), Expect = 0.001
Identities = 46/203 (22%), Positives = 85/203 (41%), Gaps = 22/203 (10%)
Query: 76 SKKMDVMKTEMVQAEKTAAEI---IRKLEKQETPEECAKTSVKPKKKKKQKPQEA--PQE 130
+K + K+ + + K+ AE +++ K + + + P K++ + P++A P++
Sbjct: 598 AKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEK 657
Query: 131 NGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNR 190
K P + S P K ++ S EK S + E K SP +E P++A +
Sbjct: 658 EEAKSPEKAKS-PVKAEAKSPEKAKSPVKAEAKSP-----EKAKSPVKEEAKSPEKAKS- 710
Query: 191 SVTKKKTGNSPSKRKELV---SSGPEEAAGSKSSSKKKKKLHKVPQ-----EDESANGRP 242
K+ SP K K V + PE+A K + K P+ + +S +
Sbjct: 711 --PVKEEAKSPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKT 768
Query: 243 PSGGAHPTPRRHFPFRVLHPNKK 265
P+ +P FP + P K+
Sbjct: 769 PAKEEARSPADKFPEKAKSPVKE 791
Score = 41.2 bits (95), Expect = 0.001
Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 9/170 (5%)
Query: 77 KKMDVMKTEMVQAEKTAAEIIRKLEK-----QETPEECAKTSVKPKKKKKQKPQEAPQEN 131
+K D K E + E ++ K E +E+ E K + KKK +EAP +
Sbjct: 855 EKKDSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKV 914
Query: 132 GIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRS 191
+K+ + K K + + + P +K + KEE P+E
Sbjct: 915 EVKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEAAPEKKDT--KEEKAKKPEEKPKTE 972
Query: 192 VTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGR 241
K+ + S KE E+A S S+ +K K + ED++A G+
Sbjct: 973 AKAKEDDKTLS--KEPSKPKAEKAEKSSSTDQKDSKPPEKATEDKAAKGK 1020
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 6/186 (3%)
Query: 56 EKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECA--KTS 113
E+ E EE E S + + +A+ A + E+ ++P E + +
Sbjct: 491 EEEAEGGEEETKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKA 550
Query: 114 VKPKKKKKQKPQEA--PQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNR 171
P K++ + P EA P++ K P+ S P K KS +KE+ S ++ P +
Sbjct: 551 KSPAKEEAKSPPEAKSPEKEEAKSPAEVKS-PEKAKSPAKEEAKSPAEAKSPEKAKSPVK 609
Query: 172 KTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKV 231
+ + EA + KE K + S KE S PE+A + K + K
Sbjct: 610 EEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKS-PEKAKSPEKEEAKSPEKAKS 668
Query: 232 PQEDES 237
P + E+
Sbjct: 669 PVKAEA 674
Score = 40.8 bits (94), Expect = 0.001
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 88 QAEKTAAEIIRKLEKQETPE-ECAKTSVK---PKKKKKQKPQEAPQENGIKDPSNSFSKP 143
+A+ A E + + ++PE E AK+ + P+K K +EA K P + S P
Sbjct: 549 KAKSPAKEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKS-P 607
Query: 144 NKRKSFSKEKLVSSHREETAGSISLPN-RKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPS 202
K ++ S + S +EE + + K SP +E P++A + +K+ SP
Sbjct: 608 VKEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKS---PEKEEAKSPE 664
Query: 203 KRKELV---SSGPEEAAGSKSSSKKKKKLHKVPQEDES 237
K K V + PE+A + K + K P ++E+
Sbjct: 665 KAKSPVKAEAKSPEKAKSPVKAEAKSPEKAKSPVKEEA 702
Score = 40.0 bits (92), Expect = 0.002
Identities = 52/213 (24%), Positives = 81/213 (38%), Gaps = 38/213 (17%)
Query: 63 EERLSFYETGE-----ILSKKMDVMKTEMV--QAEKTAAEIIRK---------------- 99
EE++ E E + + + TE V + EK A E K
Sbjct: 441 EEKIKVVEKSEKETVIVEEQTEETQVTEEVTEEEEKEAKEEEGKEEEGGEEEEAEGGEEE 500
Query: 100 -----LEKQETPEECAKTSVK-----PKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSF 149
E+ +PE+ AK+ VK P + K + +EA +K P + S P K ++
Sbjct: 501 TKSPPAEEAASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKAKS-PAKEEAK 559
Query: 150 SKEKLVSSHREETAGSISLPN-RKTSSPKEEAVNDPKEAGNRSVTK---KKTGNSPSKRK 205
S + S +EE + + K SP +E P EA + K K+ SP++ K
Sbjct: 560 SPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAK 619
Query: 206 ELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESA 238
V + A KS K K + + E A
Sbjct: 620 SPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKA 652
Score = 37.7 bits (86), Expect = 0.011
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 16/150 (10%)
Query: 101 EKQETPEECA--KTSVKPKKKKKQKPQEAPQENGIKDPSNSFSK-PNKRKSFSKEKLVSS 157
E+ ++P E + + P K++ + P EA K P +K P + KS KE+ S
Sbjct: 570 EEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKSP 629
Query: 158 HREETAGSISLPNR-------KTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELV-- 208
++ P + K SP++E P++A + K SP K K V
Sbjct: 630 AEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKS---PVKAEAKSPEKAKSPVKA 686
Query: 209 -SSGPEEAAGSKSSSKKKKKLHKVPQEDES 237
+ PE+A K + K P ++E+
Sbjct: 687 EAKSPEKAKSPVKEEAKSPEKAKSPVKEEA 716
Score = 33.1 bits (74), Expect = 0.27
Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 9/150 (6%)
Query: 57 KLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKP 116
K++E+ E + + ++ +KK + + V + A ++++ P+E + + K
Sbjct: 873 KVEEKKEPAVEKPKESKVEAKKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEKTEVAKKE 932
Query: 117 KKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSP 176
K K P E P +K K K ++ + +E ++S ++ S P
Sbjct: 933 PDDAKAKEPSKPAEKKEAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLS---KEPSKP 989
Query: 177 KEEAVNDPKEAGNRSVTKKKTGNSPSKRKE 206
K E +A S T +K P K E
Sbjct: 990 KAE------KAEKSSSTDQKDSKPPEKATE 1013
>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
sapiens]
Length = 783
Score = 51.2 bits (121), Expect = 1e-06
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 55 GEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSV 114
GE L++Q EE+ E K E+ + E+T ++++K+ P E S
Sbjct: 20 GETLRKQTEEK-------EKKEKPKSDKTEEIAEEEETVFPKAKQVKKKAEPSEVDMNSP 72
Query: 115 KPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTS 174
K KK KK+ E P +N I + S K+K ++K+VSS ++ K
Sbjct: 73 KSKKAKKK---EEPSQNDISPKTKSL---RKKKEPIEKKVVSSKTKKVT--------KNE 118
Query: 175 SPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSS--------GPEEAAGSKSSSKKKK 226
P EE ++ PK + K+ G + K +L + P EAA +S+S+ ++
Sbjct: 119 EPSEEEIDAPKPKKMKK-EKEMNGETREKSPKLKNGFPHPEPDCNPSEAASEESNSEIEQ 177
Query: 227 KLHKVPQEDESAN 239
++ +E +N
Sbjct: 178 EIPVEQKEGAFSN 190
Score = 37.4 bits (85), Expect = 0.015
Identities = 36/157 (22%), Positives = 58/157 (36%), Gaps = 19/157 (12%)
Query: 100 LEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHR 159
++K ET + + K +K K K +E +E + F K K V
Sbjct: 17 MKKGETLRKQTEEKEKKEKPKSDKTEEIAEE--------------EETVFPKAKQVKKKA 62
Query: 160 EETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTG-----NSPSKRKELVSSGPEE 214
E + ++ P K + KEE + +S+ KKK S +K + P E
Sbjct: 63 EPSEVDMNSPKSKKAKKKEEPSQNDISPKTKSLRKKKEPIEKKVVSSKTKKVTKNEEPSE 122
Query: 215 AAGSKSSSKKKKKLHKVPQEDESANGRPPSGGAHPTP 251
KK KK ++ E + + +G HP P
Sbjct: 123 EEIDAPKPKKMKKEKEMNGETREKSPKLKNGFPHPEP 159
>gi|157738619 smoothelin-like 1 [Homo sapiens]
Length = 512
Score = 51.2 bits (121), Expect = 1e-06
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 16/190 (8%)
Query: 70 ETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECA-KTSVKPKKKKKQKPQEAP 128
E E KK D K E + RK E + P+E K S +K+K + +EA
Sbjct: 106 EDAEAELKKEDGEKEETTVGSQEMTG--RKEETKSEPKEAEEKESTLASEKQKAEEKEAK 163
Query: 129 QENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK--TSSPKEEAVNDPKE 186
E+G K +N KP + + +E ++ +EET RK ++ PKE+A ++ +
Sbjct: 164 PESGQKADANDRDKPEPKATVEEEDAKTASQEETG------QRKECSTEPKEKATDEEAK 217
Query: 187 AGNRSVTKKKTGNSPSKR---KELVSSGPEEAAGSKSSSKKKKKLH--KVPQEDESANGR 241
A ++ + + K KE G +E A +K ++ ++ +E E +
Sbjct: 218 AESQKAVVEDEAKAEPKEPDGKEEAKHGAKEEADAKEEAEDAEEAEPGSPSEEQEQDVEK 277
Query: 242 PPSGGAHPTP 251
P GGA P
Sbjct: 278 EPEGGAGVIP 287
Score = 35.0 bits (79), Expect = 0.072
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 85 EMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQE--NGIKDPSNSFSK 142
E Q ++ + E K +E E K V+ + K + K + +E +G K+ +++ +
Sbjct: 196 ETGQRKECSTEPKEKATDEEAKAESQKAVVEDEAKAEPKEPDGKEEAKHGAKEEADAKEE 255
Query: 143 PNKRK-------SFSKEKLVSSHREETAGSI-SLPNRKTSSPKEEAVNDPKEA-GNRSVT 193
+ S +E+ V E AG I S P SP E N + G V
Sbjct: 256 AEDAEEAEPGSPSEEQEQDVEKEPEGGAGVIPSSPEEWPESPTGEGHNLSTDGLGPDCVA 315
Query: 194 KKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRP 242
+T SPS + S P+ S SS +KK+ K P+ SA RP
Sbjct: 316 SGQT--SPSASESSPSDVPQSPPESPSSGEKKE---KAPERRVSAPARP 359
>gi|15559211 RE1-silencing transcription factor [Homo sapiens]
Length = 1097
Score = 49.3 bits (116), Expect = 4e-06
Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 27/202 (13%)
Query: 76 SKKMDVMKTEMVQAEKTAAEIIRKL--EKQETPEECAKTSVKPKKKKKQKPQEAPQENGI 133
+K MDV K ++ + +K A++ + EK E + K V KK +K E +
Sbjct: 417 NKTMDVSKVKLKKTKKREADLPDNITNEKTEIEQTKIKGDVAGKKNEKSVKAEKRDVSKE 476
Query: 134 KDPSNSFS----KPNKRKS-----------------FSKEKLVSSHREETAGSISLP-NR 171
K PSN+ S RKS FSK K E + S+ P N
Sbjct: 477 KKPSNNVSVIQVTTRTRKSVTEVKEMDVHTGSNSEKFSKTKKSKRKLEVDSHSLHGPVND 536
Query: 172 KTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKE---LVSSGPEEAAGSKSSSKKKKKL 228
+ SS K++ + K N K +K+ + S ++ +KSS K K
Sbjct: 537 EESSTKKKKKVESKSKNNSQEVPKGDSKVEENKKQNTCMKKSTKKKTLKNKSSKKSSKPP 596
Query: 229 HKVPQEDESANGRPPSGGAHPT 250
K P E SA PP G PT
Sbjct: 597 QKEPVEKGSAQMDPPQMGPAPT 618
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 48.9 bits (115), Expect = 5e-06
Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 41/233 (17%)
Query: 52 SIFGEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAK 111
S F E +E++++R +I +K+ MK + +K R E++E+ E +
Sbjct: 121 SAFLELKKEEIKQR-------QIEQEKLASMKKQDEDKDK------RDKEEKESSREKRE 167
Query: 112 TSVKPKKKKKQKPQEAPQENGIK-DPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPN 170
S P+++K + P + + ++ + S S+ + ++ S+ + ++E + P+
Sbjct: 168 RSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKEKTPELPEPS 227
Query: 171 RKTSSP---------------KEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEA 215
K P K E + +PKE +KK+ K KE
Sbjct: 228 VKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKE------KEKEKTRPRSRSR 281
Query: 216 AGSKSSSKKKKKLHKVPQEDESANGRP------PSGGAHPTPRRHFPFRVLHP 262
+ S+S ++ + H P+ + R PS P+PRR P R + P
Sbjct: 282 SKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPP 334
Score = 46.2 bits (108), Expect = 3e-05
Identities = 47/197 (23%), Positives = 79/197 (40%), Gaps = 21/197 (10%)
Query: 82 MKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENG-------IK 134
+K VQ + ++I++ + + PE + K KK+K+K + P+ +
Sbjct: 230 VKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTR 289
Query: 135 DPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTK 194
S S ++P +R S+ + S R + P R+T P P+ +RS
Sbjct: 290 SRSPSHTRPRRRHR-SRSRSYSPRRRPSPRRRPSPRRRT--PPRRMPPPPRHRRSRS--- 343
Query: 195 KKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDES--ANGRPPSGGAHPTPR 252
P +R+ S+ ++ S SSS+ + K P+ S R S A P R
Sbjct: 344 ------PVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRR 397
Query: 253 RHFPFRVLHPNKKFSHT 269
RH P P K H+
Sbjct: 398 RHRPSPPATPPPKTRHS 414
Score = 34.7 bits (78), Expect = 0.094
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 11/150 (7%)
Query: 97 IRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQE--NGIKDPSNSFSKPNKRKSFSKEKL 154
I++ P + S P K++ P P+ + P S KR+S S L
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPS---L 656
Query: 155 VSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEE 214
S HR+ ++ S S ++ P + P+ +T +SP + SS P+
Sbjct: 657 SSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRA------PQTSSSPPPVRRGASSSPQR 710
Query: 215 AAGSKSSSKKKKKLHKVPQEDESANGRPPS 244
S++ +++ + P+ + PS
Sbjct: 711 RQSPSPSTRPIRRVSRTPEPKKIKKAASPS 740
Score = 32.7 bits (73), Expect = 0.36
Identities = 39/164 (23%), Positives = 63/164 (38%), Gaps = 17/164 (10%)
Query: 113 SVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
S P +K+QK + +P+ + PS P R+ S R T P R+
Sbjct: 528 SASPSPRKRQK-ETSPRGRRRRSPS----PPPTRRRRSPSPAPPPRRRRTP--TPPPRRR 580
Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVP 232
T SP + + + ++ + + P KR+ P + S S K++ H P
Sbjct: 581 TPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 640
Query: 233 QEDESA---NGRPPS------GGAHPTPRRHFPFRVLHPNKKFS 267
+ S+ R PS G+ P+ R R PNK+ S
Sbjct: 641 PKQRSSPVTKRRSPSLSSKHRKGSSPS-RSTREARSPQPNKRHS 683
Score = 30.4 bits (67), Expect = 1.8
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 2/118 (1%)
Query: 113 SVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
S P++++ P P + P K S + VSS R + +
Sbjct: 705 SSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKP 764
Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHK 230
+ P P + +V KK SP+ + +E G K KK KK HK
Sbjct: 765 PAPPSPVQSQSPSTNWSPAVPVKKA-KSPTPSPSPPRNSDQEGGGKKKKKKKDKK-HK 820
>gi|118498359 ribosomal L1 domain containing 1 [Homo sapiens]
Length = 490
Score = 46.2 bits (108), Expect = 3e-05
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 77 KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVK-PKKKKKQKPQEAPQENG--- 132
+K K + QA KTA+ L K + E T+VK P+ KK+Q P+ ++ G
Sbjct: 297 EKQKERKKKRQQARKTASV----LSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGRGK 352
Query: 133 --IKDPSNSFSK-----PNKRKSFSKEKL-VSSHREETAGSISLPNRKTSSPKEEAVNDP 184
+K + S + P +K+ + EK+ + H PN T K+
Sbjct: 353 AQVKATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKSPNPSTPRGKKRKALPA 412
Query: 185 KEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPS 244
E ++ + G SP K+ ++ EEA KS S KK + P++ E+ PS
Sbjct: 413 SETP-KAAESETPGKSPEKKPKI----KEEAVKEKSPSLGKKDARQTPKKPEAKFFTTPS 467
Query: 245 GG---AHPTPRR 253
A TP++
Sbjct: 468 KSVRKASHTPKK 479
Score = 41.2 bits (95), Expect = 0.001
Identities = 60/262 (22%), Positives = 110/262 (41%), Gaps = 35/262 (13%)
Query: 39 IASQIDCFAEVLMSI---FGEKLQEQVEE-RLSFYETGEILSKKMDVMKTEMVQ-AEKTA 93
+ QI+ E ++++ EKL E+ E +L F +T + S + + + + E T
Sbjct: 219 VGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEK--SAALPIFSSFVSNWDEATK 276
Query: 94 AEIIRKLEKQETPEECAKTSVKPK--KKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSK 151
++ K +K+ + + K K KKK+Q+ ++ D + +K SK
Sbjct: 277 RSLLNKKKKEARRKRRERNFEKQKERKKKRQQARKTASVLSKDDVAPESGDTTVKKPESK 336
Query: 152 EKLVSSHREETAGSISLPNRKTSSPKEE-----------AVNDPKEAGNRSVTKKKTGNS 200
++ H ++ G + T+ ++E N+ E + KK S
Sbjct: 337 KEQTPEHGKKKRGRGKAQVKATNESEDEIPQLVPIGKKTPANEKVEIQKHATGKKSPAKS 396
Query: 201 PS-------KRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGG---AHPT 250
P+ KRK L +S +AA S++ K +K K+ ++E+ + PS G A T
Sbjct: 397 PNPSTPRGKKRKALPASETPKAAESETPGKSPEKKPKI--KEEAVKEKSPSLGKKDARQT 454
Query: 251 PRRHFPFRVLHPNK---KFSHT 269
P++ P+K K SHT
Sbjct: 455 PKKPEAKFFTTPSKSVRKASHT 476
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 45.8 bits (107), Expect = 4e-05
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 3/168 (1%)
Query: 98 RKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSS 157
R +K+ EC+ S P +KKK+ ++ ++ + S S K R SK K
Sbjct: 180 RSRKKRRLESECSCGSSSPLRKKKKSVKKHRRD---RSDSGSRRKRRHRSRSSKCKRKEK 236
Query: 158 HREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAG 217
++E+ P R++ + + P + + S ++ + SP R E +G + ++G
Sbjct: 237 NKEKKRPHTESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSG 296
Query: 218 SKSSSKKKKKLHKVPQEDESANGRPPSGGAHPTPRRHFPFRVLHPNKK 265
S+S S PQ + + R + G P P + P+ +
Sbjct: 297 SRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPR 344
Score = 30.8 bits (68), Expect = 1.4
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 26/138 (18%)
Query: 110 AKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLP 169
+ S PKKKKK+K R+S K +L S E + GS S
Sbjct: 162 SSASPPPKKKKKKKG-------------------GHRRSRKKRRLES---ECSCGSSSPL 199
Query: 170 NRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPE---EAAGSKSSSKKKK 226
+K S K+ D ++G+R + ++ +S KRKE E+ G +S
Sbjct: 200 RKKKKSVKKHR-RDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHRHSSG 258
Query: 227 KLHKVPQEDESANGRPPS 244
H ++ R PS
Sbjct: 259 SSHSPSLSSHYSDSRSPS 276
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 45.8 bits (107), Expect = 4e-05
Identities = 45/184 (24%), Positives = 76/184 (41%), Gaps = 12/184 (6%)
Query: 60 EQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKK 119
E+V+++L +TG SK + + +M E E+ + EK + E + + KKK
Sbjct: 42 EEVKKQLENKKTG---SKALAEFEEKM--NENWKKELEKSREKLLSGNESSSKKRERKKK 96
Query: 120 KKQKPQEAPQENGIKDPSNSFS-------KPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
+K+K + + D S+S S K KR+ K + S + T S S
Sbjct: 97 RKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKES 156
Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVP 232
K+ KE RS++KK+ + P + S E +KKK++ +
Sbjct: 157 VKKKKKSKDETEKEKDVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEERE 216
Query: 233 QEDE 236
Q E
Sbjct: 217 QAKE 220
Score = 38.1 bits (87), Expect = 0.009
Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 18/220 (8%)
Query: 29 ISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQ 88
+ + L NK + + + F E + + ++L++ E+ LS E+ ++ K + +
Sbjct: 44 VKKQLENKKTGSKALAEFEEKMNENWKKELEKSREKLLSGNESSSKKRERKKKRKKKSCR 103
Query: 89 AEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKS 148
+ +++ ++ +E K + KKKK + + + + + S K+KS
Sbjct: 104 SSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKS 163
Query: 149 FSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELV 208
+ + +E+ S+S RK S P ++ ++ E+ + S ++ +R E
Sbjct: 164 KDE-----TEKEKDVRSLS-KKRKKSYPDDKPLS--SESSSESDYEEDVQAKKKRRCE-- 213
Query: 209 SSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGGAH 248
E + KKKKK HK S + SG +H
Sbjct: 214 ----EREQAKEKVKKKKKKQHK----KHSKKKKKKSGSSH 245
>gi|32528306 replication factor C large subunit [Homo sapiens]
Length = 1147
Score = 45.4 bits (106), Expect = 5e-05
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 10/156 (6%)
Query: 94 AEIIRKL-EKQETPEECAKTSVKPKKKKKQKPQEAP------QENGIKDPSNSFSKPNKR 146
AE+ R+L E +E A +PK KK +K EA Q N K + + K
Sbjct: 213 AELERQLHEDEEFARTLAMLDEEPKTKKARKDTEAGETFSSVQANLSKAEKHKYPHKVKT 272
Query: 147 KSFSKEKLVSSHREET---AGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSK 203
S E+ S R+++ + S + K+S+ K V+ PK + ++ K+K +S +
Sbjct: 273 AQVSDERKSYSPRKQSKYESSKESQQHSKSSADKIGEVSSPKASSKLAIMKRKEESSYKE 332
Query: 204 RKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESAN 239
+ + S E A K +K KK P + ES +
Sbjct: 333 IEPVASKRKENAIKLKGETKTPKKTKSSPAKKESVS 368
Score = 32.7 bits (73), Expect = 0.36
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 47 AEVLMSIFGEKLQEQVEERLSFY----ETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEK 102
A+ L+ +G K+ V ++ ++ ++G+ S K + T+++ E +IR +
Sbjct: 426 AKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIID-EDGLLNLIRTMPG 484
Query: 103 QETPEECA-KTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSK-EKLVSSHRE 160
+++ E A +T +K + K ++ PQ+ Q PS S+ K + SK + L + ++
Sbjct: 485 KKSKYEIAVETEMKKESKLERTPQKNVQGKRKISPSKKESESKKSRPTSKRDSLAKTIKK 544
Query: 161 ET 162
ET
Sbjct: 545 ET 546
Score = 31.2 bits (69), Expect = 1.0
Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 12/170 (7%)
Query: 77 KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDP 136
+K K ++ + +E +++ + P E S KP K +Q P E +D
Sbjct: 56 QKQPSKKKRIIYDSDSESEETLQVKNAKKPPEKLPVSSKPGKISRQDPVTYISETDEEDD 115
Query: 137 -----SNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRS 191
+ S SK N R + S L +S+ ++ + N+ S K + G S
Sbjct: 116 FMCKKAASKSKENGRSTNSH--LGTSNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTGS 173
Query: 192 VTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKK-----KLHKVPQEDE 236
V + SKRKEL + E ++ +K+ + +L + EDE
Sbjct: 174 VQRSNKKMVASKRKELSQNTDESGLNDEAIAKQLQLDEDAELERQLHEDE 223
>gi|15149465 caldesmon 1 isoform 5 [Homo sapiens]
Length = 532
Score = 44.3 bits (103), Expect = 1e-04
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 11/184 (5%)
Query: 59 QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKK 118
+E+ E R YE E + K + AE+ E K E++E + K
Sbjct: 144 EEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQIK 203
Query: 119 KKKQKPQEAPQEN--GIKDPSNSFSKPNKRKS-FSKEKLVSSHREETAGSISLPNRKTSS 175
+K K + P+E D F++ + F KL + T + S P + S
Sbjct: 204 DEKIKKDKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKL-----KHTENTFSRPGGRASV 258
Query: 176 PKEEAVNDPK-EAGNR-SVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKK-KLHKVP 232
+EA P+ EAG R +++ G + S+ E + +EAA KKK+ + KV
Sbjct: 259 DTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVL 318
Query: 233 QEDE 236
+E+E
Sbjct: 319 EEEE 322
>gi|4826657 caldesmon 1 isoform 2 [Homo sapiens]
Length = 538
Score = 44.3 bits (103), Expect = 1e-04
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 11/184 (5%)
Query: 59 QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKK 118
+E+ E R YE E + K + AE+ E K E++E + K
Sbjct: 150 EEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQIK 209
Query: 119 KKKQKPQEAPQEN--GIKDPSNSFSKPNKRKS-FSKEKLVSSHREETAGSISLPNRKTSS 175
+K K + P+E D F++ + F KL + T + S P + S
Sbjct: 210 DEKIKKDKEPKEEVKSFMDRKKGFTEVKSQNGEFMTHKL-----KHTENTFSRPGGRASV 264
Query: 176 PKEEAVNDPK-EAGNR-SVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKK-KLHKVP 232
+EA P+ EAG R +++ G + S+ E + +EAA KKK+ + KV
Sbjct: 265 DTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAALELEELKKKREERRKVL 324
Query: 233 QEDE 236
+E+E
Sbjct: 325 EEEE 328
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 43.9 bits (102), Expect = 2e-04
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 16/187 (8%)
Query: 90 EKTAAEIIRKLEKQETPEECAKTSVKPKKKK----KQKPQE------APQENGIKDPSNS 139
EKT ++ +K ++P + +K+ + +K K +++ QE +P ++ +K S
Sbjct: 210 EKTTRSKSKERKKSKSPSKRSKSQDQARKSKSPTLRRRSQEKIGKARSPTDDKVKIEDKS 269
Query: 140 FSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGN 199
SK K+ E +++ + L R S + + K + + +KK
Sbjct: 270 KSKDRKKSPIINESRSRDRGKKSRSPVDL--RGKSKDRRSRSKERKSKRSETDKEKKPIK 327
Query: 200 SPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQ-EDESANGRPPSGGAHPTPRRHFPFR 258
SPSK SSG E + S+ + K+ P+ D+S R P + + P R
Sbjct: 328 SPSKD---ASSGKENRSPSRRPGRSPKRRSLSPKPRDKSRRSRSPLLNDRRSKQSKSPSR 384
Query: 259 VLHPNKK 265
L P ++
Sbjct: 385 TLSPGRR 391
Score = 32.7 bits (73), Expect = 0.36
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 156 SSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEA 215
S+ T G + L + K ++ K + +RS KK G +++ S +E
Sbjct: 161 STRSSSTKGKLELVDNKITTKKRSKSRSKERTRHRSDKKKSKGGIEIVKEKTTRSKSKER 220
Query: 216 AGSKSSSKKKKKLHKVPQEDESANGRPPS 244
SKS SK+ K +D++ + P+
Sbjct: 221 KKSKSPSKRSK------SQDQARKSKSPT 243
>gi|224591430 Ly1 antibody reactive homolog [Homo sapiens]
Length = 379
Score = 43.5 bits (101), Expect = 2e-04
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 26/204 (12%)
Query: 51 MSIFGEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECA 110
+ + E + +QV S E ++K+ D V AEI K+ P
Sbjct: 122 LKVHNESILDQVWNIFSEASNSEPVNKEQDQRPLHPVA--NPHAEISTKV-----PASKV 174
Query: 111 KTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPN 170
K +V+ + + K+ +E +E + KRK KE + +H+E +
Sbjct: 175 KDAVEQQGEVKKNKRERKEE-----------RQKKRKREKKELKLENHQENSRNQKPKKR 223
Query: 171 RKTSSPKEEAVNDPK-----EAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSK---SSS 222
+K EA + AG RS KK+ +S S+ + V +G + S+ S
Sbjct: 224 KKGQEADLEAGGEEVPEANGSAGKRSKKKKQRKDSASEEEARVGAGKRKRRHSEVETDSK 283
Query: 223 KKKKKLHKVPQEDESANGRPPSGG 246
KKK KL + P+ E + P+ G
Sbjct: 284 KKKMKLPEHPEGGEPEDDEAPAKG 307
>gi|8923398 Ly1 antibody reactive homolog [Homo sapiens]
Length = 379
Score = 43.5 bits (101), Expect = 2e-04
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 26/204 (12%)
Query: 51 MSIFGEKLQEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECA 110
+ + E + +QV S E ++K+ D V AEI K+ P
Sbjct: 122 LKVHNESILDQVWNIFSEASNSEPVNKEQDQRPLHPVA--NPHAEISTKV-----PASKV 174
Query: 111 KTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPN 170
K +V+ + + K+ +E +E + KRK KE + +H+E +
Sbjct: 175 KDAVEQQGEVKKNKRERKEE-----------RQKKRKREKKELKLENHQENSRNQKPKKR 223
Query: 171 RKTSSPKEEAVNDPK-----EAGNRSVTKKKTGNSPSKRKELVSSGPEEAAGSK---SSS 222
+K EA + AG RS KK+ +S S+ + V +G + S+ S
Sbjct: 224 KKGQEADLEAGGEEVPEANGSAGKRSKKKKQRKDSASEEEARVGAGKRKRRHSEVETDSK 283
Query: 223 KKKKKLHKVPQEDESANGRPPSGG 246
KKK KL + P+ E + P+ G
Sbjct: 284 KKKMKLPEHPEGGEPEDDEAPAKG 307
>gi|15149463 caldesmon 1 isoform 4 [Homo sapiens]
Length = 558
Score = 43.5 bits (101), Expect = 2e-04
Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 33/208 (15%)
Query: 59 QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAK------- 111
+E+ E R YE E + K + AE+ E EK+E EE K
Sbjct: 144 EEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKE---DKEKEEEEEEKPKRGSIGEN 200
Query: 112 ------TSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKR--KSFSKEK---------- 153
T V+ K++K Q+ + ++ IKD K K KSF K
Sbjct: 201 QGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEVKSQN 260
Query: 154 --LVSSHREETAGSISLPNRKTSSPKEEAVNDPK-EAGNR-SVTKKKTGNSPSKRKELVS 209
++ + T + S P + S +EA P+ EAG R +++ G + S+ E +
Sbjct: 261 GEFMTHKLKHTENTFSRPGGRASVDTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLK 320
Query: 210 SGPEEAAGSKSSSKKKK-KLHKVPQEDE 236
+EAA KKK+ + KV +E+E
Sbjct: 321 QKQQEAALELEELKKKREERRKVLEEEE 348
>gi|15149467 caldesmon 1 isoform 3 [Homo sapiens]
Length = 564
Score = 43.5 bits (101), Expect = 2e-04
Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 33/208 (15%)
Query: 59 QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAK------- 111
+E+ E R YE E + K + AE+ E EK+E EE K
Sbjct: 150 EEKSESRQERYEIEETETVTKSYQKNDWRDAEENKKE---DKEKEEEEEEKPKRGSIGEN 206
Query: 112 ------TSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKR--KSFSKEK---------- 153
T V+ K++K Q+ + ++ IKD K K KSF K
Sbjct: 207 QGEEKGTKVQAKREKLQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKGFTEVKSQN 266
Query: 154 --LVSSHREETAGSISLPNRKTSSPKEEAVNDPK-EAGNR-SVTKKKTGNSPSKRKELVS 209
++ + T + S P + S +EA P+ EAG R +++ G + S+ E +
Sbjct: 267 GEFMTHKLKHTENTFSRPGGRASVDTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLK 326
Query: 210 SGPEEAAGSKSSSKKKK-KLHKVPQEDE 236
+EAA KKK+ + KV +E+E
Sbjct: 327 QKQQEAALELEELKKKREERRKVLEEEE 354
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 43.5 bits (101), Expect = 2e-04
Identities = 41/185 (22%), Positives = 94/185 (50%), Gaps = 21/185 (11%)
Query: 59 QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKK 118
++Q ER++ E E + K+ + + +++A + +++ EK+ TP E ++PKK
Sbjct: 444 EKQQTERVT-KEMNEFIHKEQNSLS--LLEAREADGDVVN--EKKRTPNETTSV-LEPKK 497
Query: 119 KKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKE 178
+ K+K ++ +G S+ S N R S + + SS ++GS S + ++SSPK
Sbjct: 498 EHKEKEKQGRSRSG--SSSSGSSSSNSRTSSTSSTVSSSSYSSSSGS-SRTSSRSSSPKR 554
Query: 179 EAVNDPKEAGNRSVT---KKKTGNSPSKRKELVSSGP-----EEAAGSKSSSKKKKKLHK 230
+ + + +RS T ++ S S+R ++ S+ + +++S +++++ ++
Sbjct: 555 K----KRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNR 610
Query: 231 VPQED 235
P +
Sbjct: 611 SPSRE 615
Score = 38.5 bits (88), Expect = 0.007
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 6/128 (4%)
Query: 113 SVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
S PK+KK+ +P + S S+S+ K +S + R SI R+
Sbjct: 549 SSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRR 608
Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRK------ELVSSGPEEAAGSKSSSKKKK 226
SP E + +R + S +RK L + + +K +KK+
Sbjct: 609 NRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKE 668
Query: 227 KLHKVPQE 234
+ + ++
Sbjct: 669 RSRSIDKD 676
Score = 33.5 bits (75), Expect = 0.21
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 19/127 (14%)
Query: 98 RKLEKQETPEECAKTSVKPKKKKKQKPQE-----APQENGIKDPSNSFSKPNKRKSFSKE 152
R ++K ++ + + K+K+KQK +E + Q++ +K S ++ S S +
Sbjct: 671 RSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVK 730
Query: 153 KLVSSHREETAGSISLPNRKTS--------------SPKEEAVNDPKEAGNRSVTKKKTG 198
+ R+++ S + ++K S S KE+ PK + +RSV K +
Sbjct: 731 IIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRS 790
Query: 199 NSPSKRK 205
+ RK
Sbjct: 791 GKKASRK 797
Score = 30.8 bits (68), Expect = 1.4
Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 11/155 (7%)
Query: 77 KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDP 136
K+M+ K + + K E I K + + E + +KK+ P E + +P
Sbjct: 439 KQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNET---TSVLEP 495
Query: 137 SNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKK 196
K++ KEK S ++ S N +TSS + + + S
Sbjct: 496 --------KKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSS 547
Query: 197 TGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKV 231
+SP ++K S +S S+ + K+
Sbjct: 548 RSSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKI 582
Score = 28.5 bits (62), Expect = 6.8
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 90 EKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSF 149
EK E +KLEK+ ++ ++ S KK+K+ ++A +G + P S ++ +
Sbjct: 241 EKMEREKQKKLEKERMEQQRSQLS----KKEKKATEDAEGGDGPRLPQRSKFDSDEEEED 296
Query: 150 SKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTK 194
++ +S + T +P + S P E + KE +TK
Sbjct: 297 TENVEAASSGKVTRSPSPVPQEEHSDP--EMTEEEKEYQMMLLTK 339
Score = 28.5 bits (62), Expect = 6.8
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 101 EKQETPEECAKTSVKPKKKK---KQKPQEAPQENGIKDPSN-SFSKPNKRKSFSKEKLVS 156
++QE +E +++ K +KKK +++ Q+ +E ++ + FS + R K K S
Sbjct: 661 KEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRL---KRKRES 717
Query: 157 SHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAA 216
+GSIS+ + S ++ + K++ KK +G+ S R S G
Sbjct: 718 ERTFSRSGSISVKIIRHDSRQDSKKSTTKDS------KKHSGSDSSGRSSSESPG----- 766
Query: 217 GSKSSSKKKKKLHK 230
SS +KK K K
Sbjct: 767 ---SSKEKKAKKPK 777
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 43.5 bits (101), Expect = 2e-04
Identities = 41/185 (22%), Positives = 94/185 (50%), Gaps = 21/185 (11%)
Query: 59 QEQVEERLSFYETGEILSKKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKK 118
++Q ER++ E E + K+ + + +++A + +++ EK+ TP E ++PKK
Sbjct: 444 EKQQTERVT-KEMNEFIHKEQNSLS--LLEAREADGDVVN--EKKRTPNETTSV-LEPKK 497
Query: 119 KKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKE 178
+ K+K ++ +G S+ S N R S + + SS ++GS S + ++SSPK
Sbjct: 498 EHKEKEKQGRSRSG--SSSSGSSSSNSRTSSTSSTVSSSSYSSSSGS-SRTSSRSSSPKR 554
Query: 179 EAVNDPKEAGNRSVT---KKKTGNSPSKRKELVSSGP-----EEAAGSKSSSKKKKKLHK 230
+ + + +RS T ++ S S+R ++ S+ + +++S +++++ ++
Sbjct: 555 K----KRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRRNR 610
Query: 231 VPQED 235
P +
Sbjct: 611 SPSRE 615
Score = 38.5 bits (88), Expect = 0.007
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 6/128 (4%)
Query: 113 SVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRK 172
S PK+KK+ +P + S S+S+ K +S + R SI R+
Sbjct: 549 SSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKIESNRARVKIRDRRRSNRNSIERERRR 608
Query: 173 TSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRK------ELVSSGPEEAAGSKSSSKKKK 226
SP E + +R + S +RK L + + +K +KK+
Sbjct: 609 NRSPSRERRRSRSRSRDRRTNRASRSRSRDRRKIDDQRGNLSGNSHKHKGEAKEQERKKE 668
Query: 227 KLHKVPQE 234
+ + ++
Sbjct: 669 RSRSIDKD 676
Score = 33.5 bits (75), Expect = 0.21
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 19/127 (14%)
Query: 98 RKLEKQETPEECAKTSVKPKKKKKQKPQE-----APQENGIKDPSNSFSKPNKRKSFSKE 152
R ++K ++ + + K+K+KQK +E + Q++ +K S ++ S S +
Sbjct: 671 RSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFSRSGSISVK 730
Query: 153 KLVSSHREETAGSISLPNRKTS--------------SPKEEAVNDPKEAGNRSVTKKKTG 198
+ R+++ S + ++K S S KE+ PK + +RSV K +
Sbjct: 731 IIRHDSRQDSKKSTTKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRS 790
Query: 199 NSPSKRK 205
+ RK
Sbjct: 791 GKKASRK 797
Score = 30.8 bits (68), Expect = 1.4
Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 11/155 (7%)
Query: 77 KKMDVMKTEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDP 136
K+M+ K + + K E I K + + E + +KK+ P E + +P
Sbjct: 439 KQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNET---TSVLEP 495
Query: 137 SNSFSKPNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKK 196
K++ KEK S ++ S N +TSS + + + S
Sbjct: 496 --------KKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSSSYSSSSGSSRTSS 547
Query: 197 TGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKV 231
+SP ++K S +S S+ + K+
Sbjct: 548 RSSSPKRKKRHSRSRSPTIKARRSRSRSYSRRIKI 582
Score = 28.5 bits (62), Expect = 6.8
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 90 EKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKPNKRKSF 149
EK E +KLEK+ ++ ++ S KK+K+ ++A +G + P S ++ +
Sbjct: 241 EKMEREKQKKLEKERMEQQRSQLS----KKEKKATEDAEGGDGPRLPQRSKFDSDEEEED 296
Query: 150 SKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTK 194
++ +S + T +P + S P E + KE +TK
Sbjct: 297 TENVEAASSGKVTRSPSPVPQEEHSDP--EMTEEEKEYQMMLLTK 339
Score = 28.5 bits (62), Expect = 6.8
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 101 EKQETPEECAKTSVKPKKKK---KQKPQEAPQENGIKDPSN-SFSKPNKRKSFSKEKLVS 156
++QE +E +++ K +KKK +++ Q+ +E ++ + FS + R K K S
Sbjct: 661 KEQERKKERSRSIDKDRKKKDKEREREQDKRKEKQKREEKDFKFSSQDDRL---KRKRES 717
Query: 157 SHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPSKRKELVSSGPEEAA 216
+GSIS+ + S ++ + K++ KK +G+ S R S G
Sbjct: 718 ERTFSRSGSISVKIIRHDSRQDSKKSTTKDS------KKHSGSDSSGRSSSESPG----- 766
Query: 217 GSKSSSKKKKKLHK 230
SS +KK K K
Sbjct: 767 ---SSKEKKAKKPK 777
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 43.1 bits (100), Expect = 3e-04
Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 12/223 (5%)
Query: 24 RNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERLSFYETGEILSKKMDVMK 83
+ + + SQ N SI + + ++ + ++ ER S Y + +++ +
Sbjct: 46 KRRSKPSQIRDNTVSIIDEEQLRGDRRQPLWMYRSLMRISERPSVY----LAARRQPLKP 101
Query: 84 TEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKPQEAPQENGIKDPSNSFSKP 143
T V+ + AAEI +K E + T ++ + + K+ KK + E G ++ ++
Sbjct: 102 TRTVEVDSKAAEIGKKGEDKTTQKDTTDSESELKQGKKDSKKGKDIEKGKEEKLDAKKDS 161
Query: 144 NK-RKSFSKEKLVSSHREETAGSISLPNRK----TSSPKEEAVNDPKEAGNRSVTKKKTG 198
K +K K K ++ E+ G N+K ++ K+ A E G KK
Sbjct: 162 KKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKDSATESEGEKGGTEKDSKKGK 221
Query: 199 NSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGR 241
K K+ A K KK +K DES + +
Sbjct: 222 KDSKKGKDSAIELQAVKADEKKDEDGKKDANK---GDESKDAK 261
Score = 28.9 bits (63), Expect = 5.2
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 191 SVTKKKTGNSPSKRKELVSSGPEEAAGSKSSSKKKKKLHKVPQEDESANGRPPSGGA 247
S ++ K G SK+ + + G EE +K SKK KK +D + GGA
Sbjct: 130 SESELKQGKKDSKKGKDIEKGKEEKLDAKKDSKKGKK-DAEKGKDSATESEDEKGGA 185
>gi|9257180 adducin 2 isoform c [Homo sapiens]
Length = 420
Score = 43.1 bits (100), Expect = 3e-04
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 24 RNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERLSFYETGEILSKKMDVMK 83
++ G SQ LA+ + S+ LMS E ++ EE + ++ ++++ K
Sbjct: 205 KSAGPQSQLLASVIAEKSRSPSTESQLMSKGDEDTKDDSEETVP-NPFSQLTDQELEEYK 263
Query: 84 TEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKP-QEAPQENGIKDPSNSFSK 142
E+ E+ E+ EK+ PEE + Q P +EA ++ + PS S +
Sbjct: 264 KEV---ERKKLELDG--EKETAPEEPGSPAKSAPASPVQSPAKEAETKSPLVSPSKSLEE 318
Query: 143 PNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPS 202
K+ SK + G + + R+ EE ++ + ++ T T S
Sbjct: 319 GTKKTETSKAATTEPETTQPEGVV-VNGREEEQTAEEILS---KGLSQMTTSADTDVDTS 374
Query: 203 KRK-ELVSSGPEEAAGSKSSSKKKKK 227
K K E V+SGP GS S S KKK
Sbjct: 375 KDKTESVTSGPMSPEGSPSKSPSKKK 400
>gi|9257192 adducin 2 isoform a [Homo sapiens]
Length = 726
Score = 43.1 bits (100), Expect = 3e-04
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 12/206 (5%)
Query: 24 RNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERLSFYETGEILSKKMDVMK 83
++ G SQ LA+ + S+ LMS E ++ EE + ++ ++++ K
Sbjct: 511 KSAGPQSQLLASVIAEKSRSPSTESQLMSKGDEDTKDDSEETVP-NPFSQLTDQELEEYK 569
Query: 84 TEMVQAEKTAAEIIRKLEKQETPEECAKTSVKPKKKKKQKP-QEAPQENGIKDPSNSFSK 142
E+ E+ E+ EK+ PEE + Q P +EA ++ + PS S +
Sbjct: 570 KEV---ERKKLELDG--EKETAPEEPGSPAKSAPASPVQSPAKEAETKSPLVSPSKSLEE 624
Query: 143 PNKRKSFSKEKLVSSHREETAGSISLPNRKTSSPKEEAVNDPKEAGNRSVTKKKTGNSPS 202
K+ SK + G + + R+ EE ++ + ++ T T S
Sbjct: 625 GTKKTETSKAATTEPETTQPEGVV-VNGREEEQTAEEILS---KGLSQMTTSADTDVDTS 680
Query: 203 KRK-ELVSSGPEEAAGSKSSSKKKKK 227
K K E V+SGP GS S S KKK
Sbjct: 681 KDKTESVTSGPMSPEGSPSKSPSKKK 706
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.123 0.335
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,977,113
Number of Sequences: 37866
Number of extensions: 606846
Number of successful extensions: 5204
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 664
Number of HSP's that attempted gapping in prelim test: 3259
Number of HSP's gapped (non-prelim): 1889
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.