Guide to the Human Genome
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Name: LOC402360 Sequence: fasta or formatted (278aa) NCBI GI: 169179771
Description:

PREDICTED: similar to hCG1742476

Not currently referenced in the text

Other entries for this name:
alt mRNA {278aa} PREDICTED: similar to hCG1742476
alt mRNA {278aa} PREDICTED: hypothetical protein LOC402360
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         19           3
 C cysteine            1.1          3           1
 D aspartate           1.8          5           1
 E glutamate           9.7         27           2
 F phenylalanine       3.6         10           1
 G glycine             5.4         15           2
 H histidine           2.9          8           1
 I isoleucine          3.6         10           2
 K lysine             15.8         44           5
 L leucine             4.3         12           1
 M methionine          1.8          5           1
 N asparagine          4.7         13           1
 P proline             7.2         20           2
 Q glutamine           4.0         11           1
 R arginine            4.7         13           2
 S serine             11.2         31           3
 T threonine           5.4         15           1
 V valine              5.0         14           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1742476 
LOC402360             1.000   PREDICTED: similar to hCG1742476 
LOC402360             1.000   PREDICTED: hypothetical protein LOC402360 
NOP56                 0.566   nucleolar protein 5A 
LOC338756             0.268   PREDICTED: similar to Nucleolar protein 5A 
LOC338756             0.268   PREDICTED: similar to Nucleolar protein 5A 
LOC338756             0.268   PREDICTED: hypothetical protein 
NOP58                 0.098   NOP58 ribonucleoprotein homolog 
MAP1B                 0.051   microtubule-associated protein 1B 
NEFH                  0.049   neurofilament, heavy polypeptide 200kDa 
DDX21                 0.049   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
SMTNL1                0.049   smoothelin-like 1 
REST                  0.045   RE1-silencing transcription factor 
SRRM1                 0.045   serine/arginine repetitive matrix 1 
RSL1D1                0.040   ribosomal L1 domain containing 1 
FLJ37078              0.040   hypothetical protein LOC222183 
FAM133A               0.040   hypothetical protein LOC286499 
RFC1                  0.038   replication factor C large subunit 
CALD1                 0.036   caldesmon 1 isoform 5 
CALD1                 0.036   caldesmon 1 isoform 2 
PRPF4B                0.036   serine/threonine-protein kinase PRP4K 
LYAR                  0.036   Ly1 antibody reactive homolog 
LYAR                  0.036   Ly1 antibody reactive homolog 
CALD1                 0.036   caldesmon 1 isoform 4 
CALD1                 0.036   caldesmon 1 isoform 3 
SFRS18                0.036   splicing factor, arginine/serine-rich 130 
SFRS18                0.036   splicing factor, arginine/serine-rich 130 
CYLC2                 0.034   cylicin 2 
ADD2                  0.034   adducin 2 isoform c 
ADD2                  0.034   adducin 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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