Guide to the Human Genome
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Name: LOC100288918 Sequence: fasta or formatted (123aa) NCBI GI: 239743516
Description:

PREDICTED: hypothetical protein XP_002342865

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.1         21           4
 C cysteine            3.3          4           2
 D aspartate           0.0          0           0
 E glutamate           3.3          4           2
 F phenylalanine       0.8          1           1
 G glycine            12.2         15           3
 H histidine           0.8          1           1
 I isoleucine          1.6          2           1
 K lysine              2.4          3           2
 L leucine            11.4         14           2
 M methionine          1.6          2           1
 N asparagine          1.6          2           1
 P proline            12.2         15           3
 Q glutamine           1.6          2           1
 R arginine            9.8         12           1
 S serine              5.7          7           1
 T threonine           8.1         10           3
 V valine              4.9          6           1
 W tryptophan          1.6          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342865 
LOC100293183          1.000   PREDICTED: hypothetical protein 
LOC100289981          1.000   PREDICTED: hypothetical protein XP_002347025 
LOC729570             0.053   PREDICTED: hypothetical protein 
LOC729570             0.053   PREDICTED: hypothetical protein 
LOC729570             0.053   PREDICTED: hypothetical protein 
LOC645602             0.048   PREDICTED: hypothetical protein 
LOC645602             0.048   PREDICTED: hypothetical protein 
LOC645602             0.048   PREDICTED: hypothetical protein 
LOC100287121          0.044   PREDICTED: hypothetical protein 
LOC100287121          0.044   PREDICTED: hypothetical protein XP_002342511 
CASKIN1               0.040   CASK interacting protein 1 
C1orf116              0.040   specifically androgen-regulated protein isoform 2 [...
C1orf116              0.040   specifically androgen-regulated protein isoform 1 [...
SALL3                 0.040   sal-like 3 
LOC643827             0.035   PREDICTED: similar to cell recognition molecule CAS...
DNM1                  0.035   dynamin 1 isoform 2 
DNM1                  0.035   dynamin 1 isoform 1 
LOC100292057          0.031   PREDICTED: hypothetical protein XP_002345830 
LOC100292934          0.031   PREDICTED: hypothetical protein 
LOC100290359          0.031   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.031   PREDICTED: hypothetical protein XP_002342114 
TAF4                  0.031   TBP-associated factor 4 
SGK493                0.031   protein kinase-like protein SgK493 
CHCHD10               0.031   coiled-coil-helix-coiled-coil-helix domain containin...
LOC728800             0.031   PREDICTED: hypothetical protein 
LOC100294438          0.031   PREDICTED: hypothetical protein 
HOXA2                 0.031   homeobox A2 
C6orf132              0.031   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.031   PREDICTED: chromosome 6 open reading frame 132 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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