Guide to the Human Genome
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Name: LOC100287121 Sequence: fasta or formatted (272aa) NCBI GI: 239742421
Description:

PREDICTED: hypothetical protein XP_002342511

Not currently referenced in the text

Other entries for this name:
alt mRNA {272aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         40           3
 C cysteine            1.8          5           1
 D aspartate           1.1          3           1
 E glutamate           2.6          7           1
 F phenylalanine       2.6          7           1
 G glycine            14.0         38           3
 H histidine           1.8          5           1
 I isoleucine          0.7          2           1
 K lysine              2.6          7           1
 L leucine             8.1         22           2
 M methionine          0.7          2           1
 N asparagine          1.1          3           1
 P proline            11.8         32           3
 Q glutamine           2.2          6           1
 R arginine           14.3         39           3
 S serine              8.5         23           1
 T threonine           3.3          9           2
 V valine              5.1         14           2
 W tryptophan          2.2          6           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342511 
LOC100287121          1.000   PREDICTED: hypothetical protein 
LOC100292057          0.507   PREDICTED: hypothetical protein XP_002345830 
LOC100127891          0.048   PREDICTED: hypothetical protein 
SRRM1                 0.043   serine/arginine repetitive matrix 1 
SAMD1                 0.037   sterile alpha motif domain containing 1 
LOC100127891          0.035   PREDICTED: similar to hCG2042508 
LOC100127891          0.035   PREDICTED: similar to hCG2042508 
LOC100127891          0.035   PREDICTED: similar to hCG2042508 
LOC100293254          0.035   PREDICTED: hypothetical protein 
LOC100289377          0.035   PREDICTED: hypothetical protein 
LOC100289377          0.035   PREDICTED: hypothetical protein XP_002343119 
SFPQ                  0.034   splicing factor proline/glutamine rich (polypyrimidin...
LOC100131225          0.030   PREDICTED: hypothetical protein 
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100131225          0.030   PREDICTED: hypothetical protein 
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
LOC100131225          0.030   PREDICTED: hypothetical protein 
C6orf132              0.030   PREDICTED: hypothetical protein LOC647024 
LOC100131225          0.030   PREDICTED: hypothetical protein 
LOC100133885          0.030   PREDICTED: hypothetical protein 
SCARA3                0.030   scavenger receptor class A, member 3 isoform 1 [Homo...
LOC100291828          0.028   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.028   PREDICTED: hypothetical protein XP_002343509 
WIPF3                 0.028   WAS/WASL interacting protein family, member 3 [Homo...
LOC100292589          0.028   PREDICTED: hypothetical protein 
LOC100289408          0.028   PREDICTED: hypothetical protein 
LOC100290121          0.028   PREDICTED: hypothetical protein XP_002346879 
LOC100289408          0.028   PREDICTED: hypothetical protein XP_002344217 
LOC100289406          0.028   PREDICTED: hypothetical protein XP_002342721 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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