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Search of human proteins with 239743379
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo
sapiens]
(154 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754761 PREDICTED: hypothetical protein [Homo sapiens] 315 1e-86
gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo ... 315 1e-86
gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo ... 315 1e-86
gi|239509073 PREDICTED: hypothetical protein [Homo sapiens] 315 1e-86
gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo ... 142 1e-34
gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo ... 142 1e-34
gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo ... 142 1e-34
gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo ... 142 1e-34
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 122 9e-29
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 122 9e-29
gi|33286444 mastermind-like 2 [Homo sapiens] 41 4e-04
gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo s... 40 0.001
gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo ... 40 0.001
gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo ... 40 0.001
gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo s... 40 0.001
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 39 0.001
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 39 0.002
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 39 0.002
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 39 0.002
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 39 0.002
gi|50301232 synaptopodin 2-like isoform b [Homo sapiens] 39 0.002
gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribo... 37 0.005
gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo sap... 37 0.007
gi|61743942 abl-interactor 1 isoform a [Homo sapiens] 37 0.007
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 37 0.007
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 37 0.007
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 37 0.007
gi|30181244 doublecortin isoform c [Homo sapiens] 37 0.009
gi|30181240 doublecortin isoform c [Homo sapiens] 37 0.009
gi|30181246 doublecortin isoform a [Homo sapiens] 37 0.009
>gi|239754761 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 315 bits (807), Expect = 1e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG
Sbjct: 1 MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
Query: 61 CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST
Sbjct: 61 CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA
Sbjct: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
>gi|239749289 PREDICTED: hypothetical protein XP_002346983 [Homo
sapiens]
Length = 154
Score = 315 bits (807), Expect = 1e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG
Sbjct: 1 MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
Query: 61 CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST
Sbjct: 61 CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA
Sbjct: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
>gi|239743379 PREDICTED: hypothetical protein XP_002342845 [Homo
sapiens]
Length = 154
Score = 315 bits (807), Expect = 1e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG
Sbjct: 1 MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
Query: 61 CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST
Sbjct: 61 CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA
Sbjct: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
>gi|239509073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 315 bits (807), Expect = 1e-86
Identities = 154/154 (100%), Positives = 154/154 (100%)
Query: 1 MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG
Sbjct: 1 MVQLAPGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPG 60
Query: 61 CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST
Sbjct: 61 CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA
Sbjct: 121 AVFSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
>gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 142 bits (357), Expect = 1e-34
Identities = 71/92 (77%), Positives = 76/92 (82%)
Query: 63 GATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAV 122
G T G SPL+PGGSR+IQKFLLRS+FS FSSRLCSSPYSCS+VPSTAHLPSSWFP+S V
Sbjct: 211 GITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTV 270
Query: 123 FSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
FSQ ASFFSAVPVRPSR R STF S A
Sbjct: 271 FSQLASFFSAVPVRPSRCRSRRLWISTFLSIA 302
>gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo
sapiens]
Length = 348
Score = 142 bits (357), Expect = 1e-34
Identities = 71/92 (77%), Positives = 76/92 (82%)
Query: 63 GATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAV 122
G T G SPL+PGGSR+IQKFLLRS+FS FSSRLCSSPYSCS+VPSTAHLPSSWFP+S V
Sbjct: 211 GITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTV 270
Query: 123 FSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
FSQ ASFFSAVPVRPSR R STF S A
Sbjct: 271 FSQLASFFSAVPVRPSRCRSRRLWISTFLSIA 302
>gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo
sapiens]
Length = 348
Score = 142 bits (357), Expect = 1e-34
Identities = 71/92 (77%), Positives = 76/92 (82%)
Query: 63 GATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAV 122
G T G SPL+PGGSR+IQKFLLRS+FS FSSRLCSSPYSCS+VPSTAHLPSSWFP+S V
Sbjct: 211 GITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTV 270
Query: 123 FSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
FSQ ASFFSAVPVRPSR R STF S A
Sbjct: 271 FSQLASFFSAVPVRPSRCRSRRLWISTFLSIA 302
>gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 142 bits (357), Expect = 1e-34
Identities = 71/92 (77%), Positives = 76/92 (82%)
Query: 63 GATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAV 122
G T G SPL+PGGSR+IQKFLLRS+FS FSSRLCSSPYSCS+VPSTAHLPSSWFP+S V
Sbjct: 211 GITFGISPLIPGGSRRIQKFLLRSRFSKFSSRLCSSPYSCSRVPSTAHLPSSWFPSSVTV 270
Query: 123 FSQSASFFSAVPVRPSRVSKRVRQESTFFSKA 154
FSQ ASFFSAVPVRPSR R STF S A
Sbjct: 271 FSQLASFFSAVPVRPSRCRSRRLWISTFLSIA 302
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 122 bits (307), Expect = 9e-29
Identities = 62/86 (72%), Positives = 68/86 (79%)
Query: 54 SSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPS 113
+S +P TLG SPLLPGGSR+IQKFL S+FS FSSRLCSSPYSCS+VP+T HL S
Sbjct: 69 TSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLS 128
Query: 114 SWFPNSTAVFSQSASFFSAVPVRPSR 139
WF NSTAVFSQSA FFS VPV PSR
Sbjct: 129 RWFANSTAVFSQSAIFFSFVPVLPSR 154
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 122 bits (307), Expect = 9e-29
Identities = 62/86 (72%), Positives = 68/86 (79%)
Query: 54 SSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPS 113
+S +P TLG SPLLPGGSR+IQKFL S+FS FSSRLCSSPYSCS+VP+T HL S
Sbjct: 69 TSLGSPSWDVLTLGTSPLLPGGSRRIQKFLFFSRFSMFSSRLCSSPYSCSRVPNTTHLLS 128
Query: 114 SWFPNSTAVFSQSASFFSAVPVRPSR 139
WF NSTAVFSQSA FFS VPV PSR
Sbjct: 129 RWFANSTAVFSQSAIFFSFVPVLPSR 154
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 41.2 bits (95), Expect = 4e-04
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 21 PSSLDVPPLLHSPSPGPTGQDKAPLPSL--SGLSPSSSPTPGCPGAT 65
P++ P PSPGP GQ+K P PS SP SSP PG G +
Sbjct: 458 PTNWSALPSSAGPSPGPFGQEKIPSPSFGQQTFSPQSSPMPGVAGGS 504
>gi|20986497 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 39.7 bits (91), Expect = 0.001
Identities = 22/70 (31%), Positives = 25/70 (35%)
Query: 6 PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
P P TS P+ P SP PGP Q P P +G + P P CP
Sbjct: 578 PAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPG 637
Query: 66 LGASPLLPGG 75
P P G
Sbjct: 638 PAPHPTGPPG 647
Score = 31.2 bits (69), Expect = 0.37
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 6 PGGP-PTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQD---KAPLP-----SLSGLSPSS- 55
P GP P ++GS + P PP P+P PTG P P S S L+ S
Sbjct: 613 PTGPQPQSAGSTSGPVPQPACPPP---GPAPHPTGPPGPIPVPAPPQIATSTSLLAAQSL 669
Query: 56 SPTPGCPG-ATLGASPLLPGG 75
P PG PG +T G P P G
Sbjct: 670 VPPPGLPGSSTPGVLPYFPPG 690
>gi|209529736 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 39.7 bits (91), Expect = 0.001
Identities = 22/70 (31%), Positives = 25/70 (35%)
Query: 6 PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
P P TS P+ P SP PGP Q P P +G + P P CP
Sbjct: 578 PAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPG 637
Query: 66 LGASPLLPGG 75
P P G
Sbjct: 638 PAPHPTGPPG 647
Score = 31.2 bits (69), Expect = 0.37
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 6 PGGP-PTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQD---KAPLP-----SLSGLSPSS- 55
P GP P ++GS + P PP P+P PTG P P S S L+ S
Sbjct: 613 PTGPQPQSAGSTSGPVPQPACPPP---GPAPHPTGPPGPIPVPAPPQIATSTSLLAAQSL 669
Query: 56 SPTPGCPG-ATLGASPLLPGG 75
P PG PG +T G P P G
Sbjct: 670 VPPPGLPGSSTPGVLPYFPPG 690
>gi|209529734 mitogen-activated protein kinase 7 isoform 1 [Homo
sapiens]
Length = 816
Score = 39.7 bits (91), Expect = 0.001
Identities = 22/70 (31%), Positives = 25/70 (35%)
Query: 6 PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
P P TS P+ P SP PGP Q P P +G + P P CP
Sbjct: 578 PAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPG 637
Query: 66 LGASPLLPGG 75
P P G
Sbjct: 638 PAPHPTGPPG 647
Score = 31.2 bits (69), Expect = 0.37
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 6 PGGP-PTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQD---KAPLP-----SLSGLSPSS- 55
P GP P ++GS + P PP P+P PTG P P S S L+ S
Sbjct: 613 PTGPQPQSAGSTSGPVPQPACPPP---GPAPHPTGPPGPIPVPAPPQIATSTSLLAAQSL 669
Query: 56 SPTPGCPG-ATLGASPLLPGG 75
P PG PG +T G P P G
Sbjct: 670 VPPPGLPGSSTPGVLPYFPPG 690
>gi|20986499 mitogen-activated protein kinase 7 isoform 2 [Homo
sapiens]
Length = 677
Score = 39.7 bits (91), Expect = 0.001
Identities = 22/70 (31%), Positives = 25/70 (35%)
Query: 6 PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
P P TS P+ P SP PGP Q P P +G + P P CP
Sbjct: 439 PAAPALTSVPAPAPAPTPTPTPVQPTSPPPGPVAQPTGPQPQSAGSTSGPVPQPACPPPG 498
Query: 66 LGASPLLPGG 75
P P G
Sbjct: 499 PAPHPTGPPG 508
Score = 31.2 bits (69), Expect = 0.37
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 6 PGGP-PTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQD---KAPLP-----SLSGLSPSS- 55
P GP P ++GS + P PP P+P PTG P P S S L+ S
Sbjct: 474 PTGPQPQSAGSTSGPVPQPACPPP---GPAPHPTGPPGPIPVPAPPQIATSTSLLAAQSL 530
Query: 56 SPTPGCPG-ATLGASPLLPGG 75
P PG PG +T G P P G
Sbjct: 531 VPPPGLPGSSTPGVLPYFPPG 551
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 39.3 bits (90), Expect = 0.001
Identities = 41/134 (30%), Positives = 52/134 (38%), Gaps = 9/134 (6%)
Query: 5 APGGPPTTSGSYTYQCPSSLDVPPLLH--SPSPGPTGQDKAPL-PSLSGLSPSSSPT-PG 60
+P P + G YT Q PS P SPS PT + +P PS S SPS SPT P
Sbjct: 1597 SPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPS 1656
Query: 61 CPGATLGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPSTAHLPSSWFPNST 120
+ SP P S + T S +SP PS + S+ P S
Sbjct: 1657 YSPTSPSYSPTSPSYSPTSPSY-----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1711
Query: 121 AVFSQSASFFSAVP 134
+ S S+ P
Sbjct: 1712 SYSPTSPSYSPTSP 1725
Score = 32.0 bits (71), Expect = 0.22
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 34 SPGPTGQDKAPLPSLSGLSPSSSP----TPGCPGATLGASPLLP 73
+PG G + SG SP SP TPG PG+ +SP +P
Sbjct: 1540 TPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIP 1583
Score = 31.2 bits (69), Expect = 0.37
Identities = 40/127 (31%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Query: 12 TSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPL-PSLSGLSPSSSPT-PGCPGATLGAS 69
TS SY+ P+S P SP+ PT + P PS S SPS SPT P + S
Sbjct: 1730 TSPSYS---PTSPSYSPT--SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYS 1784
Query: 70 PLLPGGSRKIQKFLLRS-KFSTFSSRLC-SSPYSCSKVPSTAHLPSSWFPNSTAVFSQSA 127
P P S + S +S S R SP PS + S+ P S S
Sbjct: 1785 PTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSP 1844
Query: 128 SFFSAVP 134
S+ + P
Sbjct: 1845 SYSPSSP 1851
Score = 27.7 bits (60), Expect = 4.1
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 9/148 (6%)
Query: 12 TSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSS---SPT-PGCPGATLG 67
TS SY+ PS P SP T Q PS SPSS SPT P +
Sbjct: 1786 TSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPS 1845
Query: 68 ASPLLPGGSRKIQKFLLRS-KFSTFSSRLCSSPYSCSKVPST-AHLPSS-WFPNSTAVFS 124
SP P + K+ S K+S S + SP S + P+T + P+S + ++ V++
Sbjct: 1846 YSPSSPEYTPTSPKYSPTSPKYSPTSPKY--SPTSPTYSPTTPKYSPTSPTYSPTSPVYT 1903
Query: 125 QSASFFSAVPVRPSRVSKRVRQESTFFS 152
++ +S S S + S +S
Sbjct: 1904 PTSPKYSPTSPTYSPTSPKYSPTSPTYS 1931
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 38.9 bits (89), Expect = 0.002
Identities = 39/146 (26%), Positives = 56/146 (38%), Gaps = 10/146 (6%)
Query: 6 PGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGAT 65
P PPT G + Q + L VPP +P+P G + PL S P P P P
Sbjct: 825 PQAPPTLPGIFVIQ--NQLGVPPPASNPAPTAPGPPQPPLRPQS--QPPEGPLPPAPHLP 880
Query: 66 LGASPLLPGGSRKIQKFLLRSKFSTFSSRLCSS--PYSCSKVPSTAHL---PSSWFPNST 120
++ S + L S F + S P+ P T HL P++ P
Sbjct: 881 PSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHKSPTPPPTLHLVPEPAAPPPPPP 940
Query: 121 AVFSQSASFFSAVPVRPSRVSKRVRQ 146
F + F A+P +P + +R Q
Sbjct: 941 RTFQMVTTPFPALP-QPKALLERFHQ 965
Score = 31.6 bits (70), Expect = 0.28
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAP--LPSLSGLSPSSSPTPGCPGA 64
G P++S S +Q P D P H PSP PT P P PS P CP
Sbjct: 770 GPGPSSSPSLPHQAPLG-DSP---HLPSPHPTRPPSRPPSRPQSVSRPPSEPPLHPCPPP 825
Query: 65 TLGASPLLPG 74
A P LPG
Sbjct: 826 Q--APPTLPG 833
Score = 29.3 bits (64), Expect = 1.4
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 8 GPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKA---PLPSLSGLSPSSSPTPGCPGA 64
GPPT P + L P P G P+P L GL P+ SP G A
Sbjct: 171 GPPTVLTHQALVPPQDVVNKALSVQPFLQPVGLGNVTLQPIPGLQGL-PNGSP-GGATAA 228
Query: 65 TLGASPL 71
TLG +P+
Sbjct: 229 TLGLAPI 235
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 38.5 bits (88), Expect = 0.002
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 8 GPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATLG 67
GPP TS P V P+L P P T P+P L G P S+P P PG
Sbjct: 385 GPPATSMPELQGPP----VTPVLELPGPSAT-----PVPELPG--PLSTPVPELPGPPAT 433
Query: 68 ASPLLPGGS 76
A P LPG S
Sbjct: 434 AVPELPGPS 442
Score = 30.4 bits (67), Expect = 0.63
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 8 GPPTTSGSYTYQCPSSLDVP--------PLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTP 59
GPP T PS+ VP P+ P P T + P PS++ + S P
Sbjct: 396 GPPVTP-VLELPGPSATPVPELPGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELP 454
Query: 60 GCPGATLGASP 70
G P ++G P
Sbjct: 455 GLPAPSMGLEP 465
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 38.5 bits (88), Expect = 0.002
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 8 GPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATLG 67
GPP TS P V P+L P P T P+P L G P S+P P PG
Sbjct: 385 GPPATSMPELQGPP----VTPVLELPGPSAT-----PVPELPG--PLSTPVPELPGPPAT 433
Query: 68 ASPLLPGGS 76
A P LPG S
Sbjct: 434 AVPELPGPS 442
Score = 30.4 bits (67), Expect = 0.63
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 8 GPPTTSGSYTYQCPSSLDVP--------PLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTP 59
GPP T PS+ VP P+ P P T + P PS++ + S P
Sbjct: 396 GPPVTP-VLELPGPSATPVPELPGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELP 454
Query: 60 GCPGATLGASP 70
G P ++G P
Sbjct: 455 GLPAPSMGLEP 465
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 38.5 bits (88), Expect = 0.002
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 22/109 (20%)
Query: 32 SPSPGP--TGQDKAPLPSLSGLSPSSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFS 89
SP+P P + Q PLPS + PS +P G P + P+
Sbjct: 503 SPAPPPFLSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPV------------------ 544
Query: 90 TFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAVFSQSASFFSAVPVRPS 138
T +S L S P A P + P S A + +AS F + P+RPS
Sbjct: 545 TATSSLYIPAPSRPVTPGGAPEPPA--PPSAAAMTSTASIFLSAPLRPS 591
>gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]
Length = 753
Score = 38.5 bits (88), Expect = 0.002
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 22/109 (20%)
Query: 32 SPSPGP--TGQDKAPLPSLSGLSPSSSPTPGCPGATLGASPLLPGGSRKIQKFLLRSKFS 89
SP+P P + Q PLPS + PS +P G P + P+
Sbjct: 279 SPAPPPFLSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPV------------------ 320
Query: 90 TFSSRLCSSPYSCSKVPSTAHLPSSWFPNSTAVFSQSASFFSAVPVRPS 138
T +S L S P A P + P S A + +AS F + P+RPS
Sbjct: 321 TATSSLYIPAPSRPVTPGGAPEPPA--PPSAAAMTSTASIFLSAPLRPS 367
>gi|87239981 tankyrase, TRF1-interacting ankyrin-related ADP-ribose
polymerase [Homo sapiens]
Length = 1327
Score = 37.4 bits (85), Expect = 0.005
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 5 APGGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGA 64
A G P +GS + PSS P S SP G A P +G+S ++ PG G
Sbjct: 113 AAGVAPNPAGSGSNNSPSSSSSPTSSSSSSPSSPGSSLAESPEAAGVSSTAPLGPGAAGP 172
Query: 65 TLGASPLLPGGSRKI 79
G P + G R++
Sbjct: 173 GTGV-PAVSGALREL 186
>gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo
sapiens]
Length = 327
Score = 37.0 bits (84), Expect = 0.007
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 32 SPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATLGASPLLPG--GSRKIQKFLLRSK 87
SP+ GP+G + P P+ + L+PS + G GA+ +PL P G ++K +L+SK
Sbjct: 129 SPATGPSGAQEVPGPA-AALAPSPAAAAGTEGASPDLAPLRPAAPGQTPLRKEVLKSK 185
>gi|61743942 abl-interactor 1 isoform a [Homo sapiens]
Length = 508
Score = 37.0 bits (84), Expect = 0.007
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 13 SGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATLGASPLL 72
SGS SS+ +P + +PSP G + +P SG P+ P P +T+ A+P
Sbjct: 246 SGSRENSGSSSIGIPIAVPTPSPPTIGPENISVPPPSGAPPAPPLAPLLPVSTVIAAPGS 305
Query: 73 PGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPS-TAHLPSSWFPNSTAVFSQSASFFS 131
GS+ S+ ++ +S S Y + PS TA + N ++SQ++ +
Sbjct: 306 APGSQYGTMTRQISRHNSTTSSTSSGGY--RRTPSVTAQFSAQPHVNGGPLYSQNSISIA 363
Query: 132 AVP 134
P
Sbjct: 364 PPP 366
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 37.0 bits (84), Expect = 0.007
Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 9 PPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSG-LSPSSSPTPGCPGATLG 67
PP + PSS P SP T Q +PLP LS +SPS SP P
Sbjct: 785 PPPLLPTVPLPAPSSSASPHPCPSPLSNATAQ--SPLPILSPTVSPSPSPIPPVEPLMSA 842
Query: 68 ASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPS 107
ASP P S S FS+ SS SP S + S
Sbjct: 843 ASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISS 882
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 37.0 bits (84), Expect = 0.007
Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 9 PPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSG-LSPSSSPTPGCPGATLG 67
PP + PSS P SP T Q +PLP LS +SPS SP P
Sbjct: 986 PPPLLPTVPLPAPSSSASPHPCPSPLSNATAQ--SPLPILSPTVSPSPSPIPPVEPLMSA 1043
Query: 68 ASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPS 107
ASP P S S FS+ SS SP S + S
Sbjct: 1044 ASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISS 1083
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 37.0 bits (84), Expect = 0.007
Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 9 PPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSG-LSPSSSPTPGCPGATLG 67
PP + PSS P SP T Q +PLP LS +SPS SP P
Sbjct: 986 PPPLLPTVPLPAPSSSASPHPCPSPLSNATAQ--SPLPILSPTVSPSPSPIPPVEPLMSA 1043
Query: 68 ASPLLPGGSRKIQKFLLRSKFSTFSSRLCSSPYSCSKVPS 107
ASP P S S FS+ SS SP S + S
Sbjct: 1044 ASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISS 1083
>gi|30181244 doublecortin isoform c [Homo sapiens]
Length = 360
Score = 36.6 bits (83), Expect = 0.009
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
G P T+G P + P + SPGP + K+P S +G S S TP + +
Sbjct: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329
Query: 67 GASPLLPGGSRK 78
++P PG RK
Sbjct: 330 -STPTSPGSLRK 340
>gi|30181240 doublecortin isoform c [Homo sapiens]
Length = 360
Score = 36.6 bits (83), Expect = 0.009
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
G P T+G P + P + SPGP + K+P S +G S S TP + +
Sbjct: 276 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 329
Query: 67 GASPLLPGGSRK 78
++P PG RK
Sbjct: 330 -STPTSPGSLRK 340
>gi|30181246 doublecortin isoform a [Homo sapiens]
Length = 441
Score = 36.6 bits (83), Expect = 0.009
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 7 GGPPTTSGSYTYQCPSSLDVPPLLHSPSPGPTGQDKAPLPSLSGLSPSSSPTPGCPGATL 66
G P T+G P + P + SPGP + K+P S +G S S TP + +
Sbjct: 357 GNPSATAG------PKASPTPQKTSAKSPGPMRRSKSPADSANGTSSSQLSTPKSKQSPI 410
Query: 67 GASPLLPGGSRK 78
++P PG RK
Sbjct: 411 -STPTSPGSLRK 421
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,562,950
Number of Sequences: 37866
Number of extensions: 588911
Number of successful extensions: 4135
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 469
Number of HSP's that attempted gapping in prelim test: 3113
Number of HSP's gapped (non-prelim): 1409
length of query: 154
length of database: 18,247,518
effective HSP length: 93
effective length of query: 61
effective length of database: 14,725,980
effective search space: 898284780
effective search space used: 898284780
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.