Guide to the Human Genome
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Name: LOC100288915 Sequence: fasta or formatted (220aa) NCBI GI: 239746724
Description:

PREDICTED: hypothetical protein XP_002343820

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.0         44           3
 C cysteine            1.8          4           1
 D aspartate           1.4          3           1
 E glutamate           6.8         15           2
 F phenylalanine       0.5          1           1
 G glycine            14.5         32           2
 H histidine           4.1          9           2
 I isoleucine          0.5          1           1
 K lysine              0.5          1           1
 L leucine             2.7          6           1
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline             7.3         16           2
 Q glutamine           9.5         21           2
 R arginine           13.2         29           2
 S serine              3.6          8           2
 T threonine           2.3          5           1
 V valine              9.1         20           2
 W tryptophan          1.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343820 
LOC100289993          1.000   PREDICTED: hypothetical protein XP_002348146 
LOC100292168          0.052   PREDICTED: similar to hCG2030094 
LOC100288743          0.052   PREDICTED: similar to hCG2030094 
LOC100288743          0.052   PREDICTED: hypothetical protein XP_002342716 
CLIC6                 0.050   chloride intracellular channel 6 
LOC100294413          0.043   PREDICTED: hypothetical protein 
LOC100134702          0.040   PREDICTED: similar to mucin 
LOC728767             0.040   PREDICTED: hypothetical protein 
LOC728767             0.040   PREDICTED: hypothetical protein 
NEUROG2               0.040   neurogenin 2 
LOC100288496          0.036   PREDICTED: hypothetical protein XP_002342747 
LOC100128960          0.036   PREDICTED: similar to paraneoplastic antigen MA2 [H...
LOC100128960          0.036   PREDICTED: similar to Putative paraneoplastic antig...
C2orf55               0.033   hypothetical protein LOC343990 
LOC100293596          0.028   PREDICTED: similar to mucin 
NACAD                 0.028   NAC alpha domain containing 
NACAD                 0.028   PREDICTED: NAC alpha domain containing 
NACAD                 0.028   PREDICTED: NAC alpha domain containing 
NACAD                 0.028   PREDICTED: NAC alpha domain containing 
NACAD                 0.028   PREDICTED: NAC alpha domain containing 
EID2                  0.028   CREBBP/EP300 inhibitor 2 
LOC100292370          0.026   PREDICTED: hypothetical protein 
CACNA1B               0.024   calcium channel, voltage-dependent, N type, alpha 1B ...
EMID2                 0.024   EMI domain containing 2 
LOC100128074          0.024   PREDICTED: hypothetical protein 
LOC100133885          0.024   PREDICTED: hypothetical protein 
LOC100128074          0.024   PREDICTED: hypothetical protein 
LOC100128074          0.024   PREDICTED: hypothetical protein 
SNAPC4                0.024   small nuclear RNA activating complex, polypeptide 4,...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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