Guide to the Human Genome
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Name: LOC100127944 Sequence: fasta or formatted (486aa) NCBI GI: 239754006
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {486aa} PREDICTED: hypothetical protein
alt mRNA {486aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         63           4
 C cysteine            1.9          9           1
 D aspartate           4.9         24           2
 E glutamate           6.2         30           3
 F phenylalanine       2.1         10           2
 G glycine            12.3         60           3
 H histidine           5.3         26           2
 I isoleucine          0.8          4           1
 K lysine              2.7         13           1
 L leucine             8.4         41           5
 M methionine          0.6          3           1
 N asparagine          1.2          6           1
 P proline             4.1         20           2
 Q glutamine           6.6         32           2
 R arginine            9.3         45           2
 S serine              6.2         30           2
 T threonine           3.3         16           2
 V valine              9.3         45           2
 W tryptophan          1.2          6           1
 Y tyrosine            0.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127944          1.000   PREDICTED: hypothetical protein 
LOC100127944          1.000   PREDICTED: hypothetical protein 
PRR12                 0.015   proline rich 12 
LOC100291688          0.010   PREDICTED: hypothetical protein XP_002345241 
LOC100290054          0.010   PREDICTED: hypothetical protein XP_002348009 
LOC100128960          0.010   PREDICTED: similar to Putative paraneoplastic antig...
CACNA1A               0.009   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.009   calcium channel, alpha 1A subunit isoform 3 
LOC100292292          0.009   PREDICTED: hypothetical protein 
LOC100291384          0.009   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.009   PREDICTED: hypothetical protein XP_002343004 
LOC100131909          0.008   PREDICTED: hypothetical protein 
LOC100292168          0.008   PREDICTED: similar to hCG2030094 
LOC100131909          0.008   PREDICTED: hypothetical protein 
LOC100288743          0.008   PREDICTED: similar to hCG2030094 
LOC100131909          0.008   PREDICTED: hypothetical protein 
LOC100288743          0.008   PREDICTED: hypothetical protein XP_002342716 
TCF20                 0.008   transcription factor 20 isoform 2 
TCF20                 0.008   transcription factor 20 isoform 1 
LOC100128960          0.008   PREDICTED: similar to paraneoplastic antigen MA2 [H...
NKX1-1                0.008   PREDICTED: HPX-153 homeobox 
FNIP2                 0.008   folliculin interacting protein 2 
FOXD2                 0.008   forkhead box D2 
ACRV1                 0.007   acrosomal vesicle protein 1 isoform h precursor [Homo...
LOC100292370          0.007   PREDICTED: hypothetical protein 
LOC338758             0.007   PREDICTED: hypothetical protein 
LOC100293235          0.007   PREDICTED: hypothetical protein 
LOC100291469          0.007   PREDICTED: hypothetical protein XP_002346693 
LOC100132713          0.007   PREDICTED: similar to hCG1654128 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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