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Search of human proteins with 239742697
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742697 PREDICTED: hypothetical protein XP_002342608 [Homo
sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754162 PREDICTED: hypothetical protein [Homo sapiens] 308 1e-84
gi|239748672 PREDICTED: hypothetical protein XP_002346774 [Homo ... 308 1e-84
gi|239742697 PREDICTED: hypothetical protein XP_002342608 [Homo ... 308 1e-84
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 36 0.010
gi|239748415 PREDICTED: hypothetical protein [Homo sapiens] 36 0.010
gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo ... 36 0.010
gi|239753856 PREDICTED: hypothetical protein [Homo sapiens] 36 0.014
gi|18702331 OTU domain containing 7A [Homo sapiens] 34 0.040
gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo sa... 34 0.052
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 34 0.052
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 34 0.052
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 34 0.052
gi|157426823 NK2 homeobox 4 [Homo sapiens] 34 0.052
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 34 0.052
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 33 0.068
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 33 0.068
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 33 0.068
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 33 0.068
gi|157785645 SPEG complex locus [Homo sapiens] 33 0.068
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 33 0.068
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 33 0.12
gi|60097902 filaggrin [Homo sapiens] 33 0.12
gi|239757230 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|239751738 PREDICTED: hypothetical protein [Homo sapiens] 33 0.12
gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo ... 33 0.12
gi|58218966 hypothetical protein LOC339201 [Homo sapiens] 33 0.12
gi|169636435 caudal type homeobox 2 [Homo sapiens] 32 0.20
gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo ... 32 0.20
gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo ... 32 0.20
gi|188536004 zinc finger protein 469 [Homo sapiens] 32 0.20
>gi|239754162 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 308 bits (788), Expect = 1e-84
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MIQPPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGL 60
MIQPPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGL
Sbjct: 1 MIQPPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGL 60
Query: 61 PKEPHGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTH 120
PKEPHGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTH
Sbjct: 61 PKEPHGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTH 120
Query: 121 SRSPPPLISGTRRAARGRSVSFPPSQQRH 149
SRSPPPLISGTRRAARGRSVSFPPSQQRH
Sbjct: 121 SRSPPPLISGTRRAARGRSVSFPPSQQRH 149
>gi|239748672 PREDICTED: hypothetical protein XP_002346774 [Homo
sapiens]
Length = 149
Score = 308 bits (788), Expect = 1e-84
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MIQPPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGL 60
MIQPPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGL
Sbjct: 1 MIQPPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGL 60
Query: 61 PKEPHGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTH 120
PKEPHGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTH
Sbjct: 61 PKEPHGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTH 120
Query: 121 SRSPPPLISGTRRAARGRSVSFPPSQQRH 149
SRSPPPLISGTRRAARGRSVSFPPSQQRH
Sbjct: 121 SRSPPPLISGTRRAARGRSVSFPPSQQRH 149
>gi|239742697 PREDICTED: hypothetical protein XP_002342608 [Homo
sapiens]
Length = 149
Score = 308 bits (788), Expect = 1e-84
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MIQPPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGL 60
MIQPPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGL
Sbjct: 1 MIQPPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGL 60
Query: 61 PKEPHGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTH 120
PKEPHGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTH
Sbjct: 61 PKEPHGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTH 120
Query: 121 SRSPPPLISGTRRAARGRSVSFPPSQQRH 149
SRSPPPLISGTRRAARGRSVSFPPSQQRH
Sbjct: 121 SRSPPPLISGTRRAARGRSVSFPPSQQRH 149
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 36.2 bits (82), Expect = 0.010
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 5 PYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEP 64
P++ + ++ G + P Q +Q + Q+ V A AA + RR+PG EP
Sbjct: 2295 PHVSYSPVIRKAGGSGPPQQQQQQQQQQQQQAV------ARPGRAATSGPRRYPGPTAEP 2348
Query: 65 HGAD-PQT-------DPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEP 114
D P T P RR+ GP +RS + GGA A H S P
Sbjct: 2349 LAGDRPPTGGHSSGRSPRMERRVPGP----ARSESPRACRHGGARWPASGPHVSEGPP 2402
>gi|239748415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 36.2 bits (82), Expect = 0.010
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 34 QRRVPSARTAAAAAAAAAADSRRWPGLPKE----PHGADPQTDPSRRRRLRGPSWGGSRS 89
QR P+ R +S P LP E P G+ Q+ PSR RR+ + G R
Sbjct: 62 QRDPPADREGEREVLRGQRESPPPPQLPPELLTNPSGSAIQSSPSRFRRVPADNAGPRRQ 121
Query: 90 HRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPL-------ISGTRR 133
V L+ GA A S P+ E P PPL + GTRR
Sbjct: 122 LAKGVPLRPGAEPPA---PASDPDLEPTPPGGLKSPPLPCASGQGVPGTRR 169
>gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo
sapiens]
Length = 208
Score = 36.2 bits (82), Expect = 0.010
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 34 QRRVPSARTAAAAAAAAAADSRRWPGLPKE----PHGADPQTDPSRRRRLRGPSWGGSRS 89
QR P+ R +S P LP E P G+ Q+ PSR RR+ + G R
Sbjct: 62 QRDPPADREGEREVLRGQRESPPPPQLPPELLTNPSGSAIQSSPSRFRRVPADNAGPRRQ 121
Query: 90 HRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPL-------ISGTRR 133
V L+ GA A S P+ E P PPL + GTRR
Sbjct: 122 LAKGVPLRPGAEPPA---PASDPDLEPTPPGGLKSPPLPCASGQGVPGTRR 169
>gi|239753856 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 35.8 bits (81), Expect = 0.014
Identities = 35/111 (31%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 34 QRRVPSARTAAAAAAAAAADSRRWPGLPKE----PHGADPQTDPSRRRRLRGPSWGGSRS 89
QR P+ R +S P LP E P G+ Q+ PSR RR+ + G R
Sbjct: 62 QRDPPADREGEREVLRGQRESPPPPQLPPELLTNPSGSAIQSSPSRFRRVPADNAGPRRQ 121
Query: 90 HRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPL-------ISGTRR 133
V L+ GA A S P+ E P PPL + GTRR
Sbjct: 122 LPKGVPLRPGAEPPA---PASDPDLEPTPPGGLKSPPLPCASGQGVPGTRR 169
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 34.3 bits (77), Expect = 0.040
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 34 QRRVPSARTAAAAAAAAAADSRRWPGLPKE-----PHGADPQTDPSRRRRLR-GPSWGGS 87
QRR +A AAAAAAAAAA ++R P P+ P A P +L+ PS G +
Sbjct: 671 QRRRDAATAAAAAAAAAAATAKRPPRRPETEGVPVPERASPGPPTQLVLKLKERPSPGPA 730
Query: 88 RSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPP 125
+ G A+ ++ S + P RSPP
Sbjct: 731 AGRAARAAAGGTASPGGGARRAS----ASGPVPGRSPP 764
>gi|73858559 proline/serine-rich coiled-coil 1 isoform c [Homo
sapiens]
Length = 363
Score = 33.9 bits (76), Expect = 0.052
Identities = 36/142 (25%), Positives = 52/142 (36%), Gaps = 12/142 (8%)
Query: 18 TTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRW-PGLPKEPHGADPQTDPSRR 76
T STP P + +L R S R A + ++ +R P P P + P R
Sbjct: 135 TRSTPSPSSLTPRLRSNDRKGSVRALRATSGKRPSNMKRESPTCNLFPASKSPASSPLTR 194
Query: 77 -----RRLRGPSWGGSRSHRVQVL---LKGGAAASAISQHCSHPEPETVPTHSRS---PP 125
R GPS + S + + G ++ HP P PT RS P
Sbjct: 195 STPPVRGRAGPSGRAAASEETRAAKLRVSGSGEFVGLTLKFLHPSPPGPPTPIRSVLAPQ 254
Query: 126 PLISGTRRAARGRSVSFPPSQQ 147
P S ++R R + + S Q
Sbjct: 255 PSTSNSQRLPRPQGAAAKSSSQ 276
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.9 bits (76), Expect = 0.052
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 20/98 (20%)
Query: 58 PGLPKEPHGADPQTDPS--RRRRLRGP--SWGGSRSHRVQVLLKGGAAASAISQHCSHPE 113
PGLP + P D + RRR R P + GG+R V+ G A+A+ + P
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVR-----GQGAAAVGP--TGPR 198
Query: 114 PETVPTHSRSPPPLISGTRRAAR------GRSVSFPPS 145
P P R+PPP G RR R G + + PPS
Sbjct: 199 PTGAPPSRRTPPP---GPRRPLRSPHSGSGWTPARPPS 233
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.9 bits (76), Expect = 0.052
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 20/98 (20%)
Query: 58 PGLPKEPHGADPQTDPS--RRRRLRGP--SWGGSRSHRVQVLLKGGAAASAISQHCSHPE 113
PGLP + P D + RRR R P + GG+R V+ G A+A+ + P
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVR-----GQGAAAVGP--TGPR 198
Query: 114 PETVPTHSRSPPPLISGTRRAAR------GRSVSFPPS 145
P P R+PPP G RR R G + + PPS
Sbjct: 199 PTGAPPSRRTPPP---GPRRPLRSPHSGSGWTPARPPS 233
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 33.9 bits (76), Expect = 0.052
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 20/98 (20%)
Query: 58 PGLPKEPHGADPQTDPS--RRRRLRGP--SWGGSRSHRVQVLLKGGAAASAISQHCSHPE 113
PGLP + P D + RRR R P + GG+R V+ G A+A+ + P
Sbjct: 146 PGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARRPGVR-----GQGAAAVGP--TGPR 198
Query: 114 PETVPTHSRSPPPLISGTRRAAR------GRSVSFPPS 145
P P R+PPP G RR R G + + PPS
Sbjct: 199 PTGAPPSRRTPPP---GPRRPLRSPHSGSGWTPARPPS 233
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 33.9 bits (76), Expect = 0.052
Identities = 28/74 (37%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 4 PPYLGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPS----------ARTAAAAAAAAAAD 53
PP LG + A PGP S+ + PS A AAAAAAAAAA
Sbjct: 35 PPGLGAPLGAAAAYRAPPPGPS--SQAATVAGMQPSHAMAGHNAAAAAAAAAAAAAAAAT 92
Query: 54 SRRWPGLPKEPHGA 67
PG+ + PHGA
Sbjct: 93 YHMPPGVSQFPHGA 106
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 33.9 bits (76), Expect = 0.052
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 73 PSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPP------- 125
P R RR R P R R L G +++S+ S+ S P+ P + SPP
Sbjct: 335 PPRHRRSRSPV---RRRRRSSASLSGSSSSSSSSR--SRSPPKKPPKRTSSPPRKTRRLS 389
Query: 126 PLISGTRRAARGRSVSFPPSQQRH 149
P S RR R + PP + RH
Sbjct: 390 PSASPPRRRHRPSPPATPPPKTRH 413
Score = 27.7 bits (60), Expect = 3.7
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 21/115 (18%)
Query: 22 PGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGADPQTDPSRRRRLRG 81
P P+H + ++RR S+ + + +++++++ R P PK+P + P R+ R
Sbjct: 334 PPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSP--PKKP--PKRTSSPPRKTRRLS 389
Query: 82 PSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLISGTRRAAR 136
PS A+ +H P P SP P S R +R
Sbjct: 390 PS-----------------ASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSR 427
Score = 26.6 bits (57), Expect = 8.3
Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 17/148 (11%)
Query: 18 TTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGAD--PQTDPSR 75
T +P PQ +R + + V RT+ + R P +P + +
Sbjct: 411 TRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 470
Query: 76 RRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETV------------PTHSRS 123
+ S R +R Q + S+ S P+ V P+ S S
Sbjct: 471 GKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSAS 530
Query: 124 PPPLISGTRRAARG---RSVSFPPSQQR 148
P P + RG RS S PP+++R
Sbjct: 531 PSPRKRQKETSPRGRRRRSPSPPPTRRR 558
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 33.5 bits (75), Expect = 0.068
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 27/123 (21%)
Query: 28 SRQLEIQRRVPSAR----TAAAAAAAAAADSRRWPGLPKE---PHGADPQTDPSRRRRLR 80
+R E RR P TAAAAAA A SRR P P E P P+ P R RR
Sbjct: 203 ARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPA 262
Query: 81 GPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLI--SGTRRAARGR 138
G R HCS P P P P + S +R A R
Sbjct: 263 QRLESGCRG------------------HCSRGAPALAPPKLSPPFPCLAQSASRAAGARR 304
Query: 139 SVS 141
++S
Sbjct: 305 ALS 307
Score = 28.5 bits (62), Expect = 2.2
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 17 GTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSR-RWPGLPKEPHGADPQTDPSR 75
G +P P ++ I R R++ A + + + R P P+E + P+
Sbjct: 21 GRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTL 80
Query: 76 RRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPL 127
R R + + G S+ G +AA+A HP P + P + SPP L
Sbjct: 81 RGRAK-TTRGRSQGAGATETSAGNSAATA----APHPTPASYPQGTISPPQL 127
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 33.5 bits (75), Expect = 0.068
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 69 PQTDPSR--RRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPP 126
P+ P+R R RGP W G +A +A+ + PEP P+ RSPPP
Sbjct: 40 PRPPPARLPRNGRRGPLWKGRGPAG---RAPAASAETALPRPREPPEPGAGPSPKRSPPP 96
Query: 127 LISGTRRAARGRSVSFPPSQ 146
RA R S++ P Q
Sbjct: 97 ------RAPRASSLAAPEPQ 110
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 33.5 bits (75), Expect = 0.068
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 27/123 (21%)
Query: 28 SRQLEIQRRVPSAR----TAAAAAAAAAADSRRWPGLPKE---PHGADPQTDPSRRRRLR 80
+R E RR P TAAAAAA A SRR P P E P P+ P R RR
Sbjct: 203 ARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPA 262
Query: 81 GPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLI--SGTRRAARGR 138
G R HCS P P P P + S +R A R
Sbjct: 263 QRLESGCRG------------------HCSRGAPALAPPKLSPPFPCLAQSASRAAGARR 304
Query: 139 SVS 141
++S
Sbjct: 305 ALS 307
Score = 28.5 bits (62), Expect = 2.2
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 17 GTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSR-RWPGLPKEPHGADPQTDPSR 75
G +P P ++ I R R++ A + + + R P P+E + P+
Sbjct: 21 GRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTL 80
Query: 76 RRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPL 127
R R + + G S+ G +AA+A HP P + P + SPP L
Sbjct: 81 RGRAK-TTRGRSQGAGATETSAGNSAATA----APHPTPASYPQGTISPPQL 127
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 33.5 bits (75), Expect = 0.068
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 27/123 (21%)
Query: 28 SRQLEIQRRVPSAR----TAAAAAAAAAADSRRWPGLPKE---PHGADPQTDPSRRRRLR 80
+R E RR P TAAAAAA A SRR P P E P P+ P R RR
Sbjct: 203 ARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAPLPPTEFLSPRRTRPRKHPERTRRPA 262
Query: 81 GPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLI--SGTRRAARGR 138
G R HCS P P P P + S +R A R
Sbjct: 263 QRLESGCRG------------------HCSRGAPALAPPKLSPPFPCLAQSASRAAGARR 304
Query: 139 SVS 141
++S
Sbjct: 305 ALS 307
Score = 28.5 bits (62), Expect = 2.2
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 17 GTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSR-RWPGLPKEPHGADPQTDPSR 75
G +P P ++ I R R++ A + + + R P P+E + P+
Sbjct: 21 GRYRSPTPLRPAKGKTICTRFGDKRSSGQAGNKSERELQARTPAPPRERGESSSPRGPTL 80
Query: 76 RRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPL 127
R R + + G S+ G +AA+A HP P + P + SPP L
Sbjct: 81 RGRAK-TTRGRSQGAGATETSAGNSAATA----APHPTPASYPQGTISPPQL 127
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 33.5 bits (75), Expect = 0.068
Identities = 38/126 (30%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 39 SARTAAAAAAAAAADSRRWPGLPKEPH--GADPQ---TDP---SRRRRLRGPSWGGSRSH 90
S +T A + +RR PG P++ GA P+ +P + R L G SWG S
Sbjct: 190 SGQTVLEQEAGSGGGTRRLPGSPRQAQATGAGPRHLGVEPLVRASRANLVGASWGSEDSL 249
Query: 91 RVQVLLKGGA----AASAISQHCSHPEPETVPTHSRSPPPLIS-GTRRAAR---GRSVSF 142
V L G A A+S H S P+ P L S RR A+ +S
Sbjct: 250 SVASDLYGSAFSLYRGRALSIHVSVPQSGLRREEPDLQPQLASEAPRRPAQPPPSKSALL 309
Query: 143 PPSQQR 148
PP R
Sbjct: 310 PPPSPR 315
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 33.5 bits (75), Expect = 0.068
Identities = 35/122 (28%), Positives = 47/122 (38%), Gaps = 7/122 (5%)
Query: 28 SRQLEIQRRVPSARTAAAA-AAAAAADSRRWPGLPKEPHGADPQTDPSRRRRLRGPSWGG 86
SR RR +R+ + + D R+ P G P RRR R S G
Sbjct: 423 SRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGP------RRRSRSRSHSG 476
Query: 87 SRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLISGTRRAARGRSVSFPPSQ 146
R R L+ +++ + S P T SRS P S +R +R RS S PS
Sbjct: 477 DRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSP 536
Query: 147 QR 148
R
Sbjct: 537 AR 538
Score = 33.1 bits (74), Expect = 0.089
Identities = 33/125 (26%), Positives = 49/125 (39%)
Query: 15 ARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGADPQTDPS 74
+R + TPG + + AAAAAAAA+ + P P +P G P + S
Sbjct: 313 SRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNAS 372
Query: 75 RRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLISGTRRA 134
RRR S S S +++ + + + SRS S +RR
Sbjct: 373 ARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRY 432
Query: 135 ARGRS 139
+R RS
Sbjct: 433 SRSRS 437
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 32.7 bits (73), Expect = 0.12
Identities = 36/134 (26%), Positives = 49/134 (36%), Gaps = 9/134 (6%)
Query: 7 LGHFVLVTARGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLP---KE 63
LG VT+R PG ++ R +E QR VP + A + S+R P P +
Sbjct: 741 LGRRPEVTSRVRARGPGGEN--RDVEAQRLVPDGDGRTSPLGGARSSSQRSPVGPAGVRS 798
Query: 64 PHGADPQ----TDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPT 119
P PQ P + + P + VQ L A A + P + P
Sbjct: 799 PRPGSPQMQASPSPGIAPKPKTPPTAPEPAAAVQAPLPREPLALAGRTAPAQPRAASAPP 858
Query: 120 HSRSPPPLISGTRR 133
RSP G RR
Sbjct: 859 TDRSPQSPSQGARR 872
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 32.7 bits (73), Expect = 0.12
Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 20 STPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGADPQTDPSRRRRL 79
S+PG +HGSR + + A++A DSR W + ++ ++ S + +
Sbjct: 3296 SSPGERHGSRHQQSADSSRHSGIPRGQASSAVRDSRHWGSSGSQASDSEGHSEESDTQSV 3355
Query: 80 RGPSWGG--SRSHRVQVLLKGGA----AASAISQHCSHPEPETVPTHSRS 123
G G +SH+ + G + S + Q +H + E+ +R+
Sbjct: 3356 SGHGQAGPHQQSHQESARDRSGGRSGRSGSFLYQVSTHEQSESAHGRTRT 3405
Score = 29.6 bits (65), Expect = 0.98
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 6/110 (5%)
Query: 20 STPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGADPQTDPSRRRRL 79
S+PG +HGSR + + A++A DS W + ++ ++ S + +
Sbjct: 1027 SSPGERHGSRHQQSADSSRHSGIPRRQASSAVRDSGHWGSSGSQASDSEGHSEESDTQSV 1086
Query: 80 RGPSWGG--SRSHRVQVL----LKGGAAASAISQHCSHPEPETVPTHSRS 123
G G +SH+ + G + S I Q +H + E+ +R+
Sbjct: 1087 SGHGQDGPHQQSHQESARDWSGGRSGRSGSFIYQVSTHEQSESAHGRTRT 1136
Score = 28.9 bits (63), Expect = 1.7
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 20 STPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGADPQTDPSRRRRL 79
S+PG +HGS + + T A++A +D + ++ ++ S + +
Sbjct: 378 SSPGERHGSGHQQSADSSRHSATGRGQASSAVSDRGHRGSSGSQASDSEGHSENSDTQSV 437
Query: 80 RGPSWGGSRSHRVQVLLKG------GAAASAISQHCSHPEPETVPTHSRS 123
G G R Q +G G + S++ Q +H +P++ H R+
Sbjct: 438 SGHGKAGLRQQSHQESTRGRSGERSGRSGSSLYQVSTHEQPDS--AHGRT 485
Score = 28.9 bits (63), Expect = 1.7
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
Query: 20 STPGPQHGSRQLEIQRRVPSARTAAAA---AAAAAADS--RRWPG---LPKEPHGADPQT 71
S+PG +HGSR Q+ S+R + A++A DS R G E H D T
Sbjct: 1351 SSPGERHGSRH---QQSADSSRHSGIGHRQASSAVRDSGHRGSSGSQVTNSEGHSEDSDT 1407
Query: 72 DPSRRRRLRGP-SWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLISG 130
GP S R Q G + S + Q SH + E+ TH ++ P +G
Sbjct: 1408 QSVSAHGQAGPHQQSHKESARGQSGESSGRSRSFLYQVSSHEQSES--THGQTAPS--TG 1463
Query: 131 TRRAAR 136
R+ +R
Sbjct: 1464 GRQGSR 1469
>gi|239757230 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 32.7 bits (73), Expect = 0.12
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 20 STPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGADPQTDPSRRRRL 79
S P Q G + + SAR+AAAA + R P P P GA RR RL
Sbjct: 43 SQPASQRGGAT--VTKPAASARSAAAATGFPCSPGPRAPPPPSRPMGA----PACRRHRL 96
Query: 80 ----------RGPSWGGSRSHRVQVLLKGGAAASA 104
RG + GG R+H GG SA
Sbjct: 97 LSRRAAQSTNRGQAGGGRRAH-------GGGVGSA 124
>gi|239751738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 32.7 bits (73), Expect = 0.12
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 20 STPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGADPQTDPSRRRRL 79
S P Q G + + SAR+AAAA + R P P P GA RR RL
Sbjct: 43 SQPASQRGGAT--VTKPAASARSAAAATGFPCSPGPRAPPPPSRPMGA----PACRRHRL 96
Query: 80 ----------RGPSWGGSRSHRVQVLLKGGAAASA 104
RG + GG R+H GG SA
Sbjct: 97 LSRRAAQSTNRGQAGGGRRAH-------GGGVGSA 124
>gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo
sapiens]
Length = 144
Score = 32.7 bits (73), Expect = 0.12
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 20 STPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGADPQTDPSRRRRL 79
S P Q G + + SAR+AAAA + R P P P GA RR RL
Sbjct: 43 SQPASQRGGAT--VTKPAASARSAAAATGFPCSPGPRAPPPPSRPMGA----PACRRHRL 96
Query: 80 ----------RGPSWGGSRSHRVQVLLKGGAAASA 104
RG + GG R+H GG SA
Sbjct: 97 LSRRAAQSTNRGQAGGGRRAH-------GGGVGSA 124
>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
Length = 193
Score = 32.7 bits (73), Expect = 0.12
Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 23 GPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGAD-PQTDPSRRRRLRG 81
GPQ G R R P +R AAA A +R PG +P GA PQ +
Sbjct: 50 GPQRGPRNAAAARPGPRSRWHKRCAAACGACARP-PGHQLQPPGAGAPQPGVA------- 101
Query: 82 PSWGGSRSHRV--QVLLKGGAAASAISQHCSHPEPETVPTHSRSPPP 126
S+ G R R + G A +H EP P R+PPP
Sbjct: 102 CSYLGPRPQRTPCSAQSRPGWCAGPRRRHAPGTEPHVAP--GRAPPP 146
Score = 27.3 bits (59), Expect = 4.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 59 GLPKEPHGA--DPQTDPSRRRRLRGPSWG 85
G P P GA P++ RR+ L+ PSWG
Sbjct: 3 GPPSAPQGALAAPRSPAVRRKGLQAPSWG 31
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 32.0 bits (71), Expect = 0.20
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 43 AAAAAAAAAADSRRWPGLPKEP--HGADPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGA 100
AAAAAAAA DS + PG P P +GA + D + P + ++ V L GG+
Sbjct: 46 AAAAAAAANLDSAQSPG-PSWPAAYGAPLREDWNG----YAPGGAAAAANAVAHGLNGGS 100
Query: 101 AASAI-----SQHCSHPEPETVPTHSRSPPPLISG 130
A+A+ + + H P P H + P SG
Sbjct: 101 PAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASG 135
>gi|239749375 PREDICTED: hypothetical protein XP_002347018 [Homo
sapiens]
Length = 265
Score = 32.0 bits (71), Expect = 0.20
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 16 RGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAAD--------SRRWPGLPKEPHGA 67
RG P P G + P TAAAAAA +A S R PG A
Sbjct: 116 RGGRGPPNPPAGQGSDTGGTKTPGTTTAAAAAATGSASPEARPLVGSCRSPGYGPSLVSA 175
Query: 68 DPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAIS 106
D P RRL P GS S ++ G+ AS +S
Sbjct: 176 DLSLPP---RRLAIPRQLGSGSAPSRIGCASGSRASVVS 211
>gi|239743512 PREDICTED: hypothetical protein XP_002342879 [Homo
sapiens]
Length = 265
Score = 32.0 bits (71), Expect = 0.20
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 11/99 (11%)
Query: 16 RGTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAAD--------SRRWPGLPKEPHGA 67
RG P P G + P TAAAAAA +A S R PG A
Sbjct: 116 RGGRGPPNPPAGQGSDTGGTKTPGTTTAAAAAATGSASPEARPLVGSCRSPGYGPSLVSA 175
Query: 68 DPQTDPSRRRRLRGPSWGGSRSHRVQVLLKGGAAASAIS 106
D P RRL P GS S ++ G+ AS +S
Sbjct: 176 DLSLPP---RRLAIPRQLGSGSAPSRIGCASGSRASVVS 211
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 32.0 bits (71), Expect = 0.20
Identities = 35/122 (28%), Positives = 48/122 (39%), Gaps = 19/122 (15%)
Query: 17 GTTSTPGPQHGSRQLEIQRRVPSARTAAAAAAAAAADSRRWPGLPKEPHGADPQTDPSRR 76
G P P+ Q R P+ R AAA S R LP P+ DP R+
Sbjct: 987 GERPPPRPRRPRTQAPGSRADPAPRVPRAAALPEETRSSRRRRLP-------PRKDP-RK 1038
Query: 77 RRLRGPSWGGSRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLISGTR-RAA 135
R+ RG +WG +++LK + + ++ E E PPP G R R
Sbjct: 1039 RKARGGAWG------KELILKIVQQKNRLREYDFASESE----EDEQPPPRGPGFRGRRG 1088
Query: 136 RG 137
RG
Sbjct: 1089 RG 1090
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,598,287
Number of Sequences: 37866
Number of extensions: 392475
Number of successful extensions: 3601
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 259
Number of HSP's that attempted gapping in prelim test: 3171
Number of HSP's gapped (non-prelim): 549
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.