Guide to the Human Genome
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Name: LOC100291032 Sequence: fasta or formatted (149aa) NCBI GI: 239748672
Description:

PREDICTED: hypothetical protein XP_002346774

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         19          10
 C cysteine            0.7          1           1
 D aspartate           2.0          3           1
 E glutamate           2.7          4           1
 F phenylalanine       1.3          2           1
 G glycine             8.7         13           2
 H histidine           5.4          8           1
 I isoleucine          2.7          4           1
 K lysine              1.3          2           1
 L leucine             5.4          8           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            12.8         19           3
 Q glutamine           6.0          9           2
 R arginine           13.4         20           4
 S serine             11.4         17           1
 T threonine           6.0          9           2
 V valine              4.7          7           1
 W tryptophan          1.3          2           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346774 
LOC100293987          1.000   PREDICTED: hypothetical protein 
LOC100288074          1.000   PREDICTED: hypothetical protein XP_002342608 
CACNA1A               0.039   calcium channel, alpha 1A subunit isoform 4 
LOC100287256          0.039   PREDICTED: hypothetical protein 
LOC100287256          0.039   PREDICTED: hypothetical protein XP_002342497 
LOC100293496          0.039   PREDICTED: hypothetical protein 
OTUD7A                0.032   OTU domain containing 7A 
PSRC1                 0.032   proline/serine-rich coiled-coil 1 isoform c 
LOC729570             0.032   PREDICTED: hypothetical protein 
LOC729570             0.032   PREDICTED: hypothetical protein 
LOC729570             0.032   PREDICTED: hypothetical protein 
NKX2-4                0.032   NK2 homeobox 4 
SRRM1                 0.032   serine/arginine repetitive matrix 1 
LOC100129571          0.028   PREDICTED: similar to hCG1646049 
LOC100290265          0.028   PREDICTED: hypothetical protein XP_002346787 
LOC100129571          0.028   PREDICTED: similar to hCG1646049 
LOC100129571          0.028   PREDICTED: similar to hCG1646049 
SPEG                  0.028   SPEG complex locus 
SFRS16                0.028   splicing factor, arginine/serine-rich 16 
LOC389333             0.028   hypothetical protein LOC389333 
FLG                   0.028   filaggrin 
LOC100292188          0.028   PREDICTED: hypothetical protein 
LOC100288824          0.028   PREDICTED: hypothetical protein 
LOC100288824          0.028   PREDICTED: hypothetical protein XP_002343711 
C17orf65              0.028   hypothetical protein LOC339201 
CDX2                  0.025   caudal type homeobox 2 
LOC100291490          0.025   PREDICTED: hypothetical protein XP_002347018 
LOC100287037          0.025   PREDICTED: hypothetical protein XP_002342879 
ZNF469                0.025   zinc finger protein 469 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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