Guide to the Human Genome
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Name: LOC100289002 Sequence: fasta or formatted (207aa) NCBI GI: 239742626
Description:

PREDICTED: hypothetical protein XP_002342598

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         27           3
 C cysteine            2.9          6           1
 D aspartate           1.4          3           1
 E glutamate           5.3         11           1
 F phenylalanine       1.9          4           1
 G glycine            12.6         26           2
 H histidine           1.9          4           1
 I isoleucine          1.4          3           1
 K lysine              5.3         11           1
 L leucine             5.3         11           2
 M methionine          1.0          2           1
 N asparagine          2.4          5           1
 P proline             9.2         19           2
 Q glutamine           4.8         10           1
 R arginine           11.6         24           2
 S serine              8.2         17           1
 T threonine           3.4          7           1
 V valine              6.3         13           2
 W tryptophan          1.9          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342598 
LOC100290805          1.000   PREDICTED: hypothetical protein XP_002346730 
LOC100293052          0.985   PREDICTED: hypothetical protein 
LOC100293327          0.025   PREDICTED: hypothetical protein 
LOC100291252          0.025   PREDICTED: hypothetical protein XP_002347634 
LOC728767             0.025   PREDICTED: hypothetical protein 
LOC100287254          0.025   PREDICTED: hypothetical protein XP_002343484 
LOC728767             0.025   PREDICTED: hypothetical protein 
SRRM2                 0.025   splicing coactivator subunit SRm300 
SFRS16                0.025   splicing factor, arginine/serine-rich 16 
LOC100291356          0.020   PREDICTED: hypothetical protein XP_002347017 
LOC100286907          0.020   PREDICTED: hypothetical protein XP_002342878 
LOC100293142          0.020   PREDICTED: similar to hCG2040019 
ELN                   0.017   elastin isoform d precursor 
ELN                   0.017   elastin isoform c precursor 
ELN                   0.017   elastin isoform b precursor 
FOXD1                 0.017   forkhead box D1 
ELN                   0.017   elastin isoform e precursor 
ELN                   0.017   elastin isoform a precursor 
LOC100292259          0.015   PREDICTED: hypothetical protein 
LOC100291533          0.015   PREDICTED: hypothetical protein XP_002347080 
LOC100289480          0.015   PREDICTED: hypothetical protein 
LOC100288002          0.015   PREDICTED: hypothetical protein XP_002342946 
LOC100289480          0.015   PREDICTED: hypothetical protein XP_002342365 
LOC100288382          0.015   PREDICTED: hypothetical protein XP_002342213 
GSPT1                 0.015   G1 to S phase transition 1 isoform 2 
GSPT1                 0.015   G1 to S phase transition 1 isoform 1 
FLJ37078              0.015   hypothetical protein LOC222183 
AEBP2                 0.015   AE binding protein 2 isoform b 
AEBP2                 0.015   AE binding protein 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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