Guide to the Human Genome
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Name: LOC100293142 Sequence: fasta or formatted (645aa) NCBI GI: 239757664
Description:

PREDICTED: similar to hCG2040019

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         55           2
 C cysteine            2.9         19           2
 D aspartate           4.5         29           1
 E glutamate           4.0         26           2
 F phenylalanine       2.3         15           2
 G glycine             9.3         60           3
 H histidine           2.5         16           1
 I isoleucine          3.1         20           1
 K lysine              2.0         13           2
 L leucine             9.6         62           4
 M methionine          2.0         13           1
 N asparagine          1.1          7           2
 P proline             9.0         58           2
 Q glutamine           5.6         36           2
 R arginine            6.0         39           2
 S serine             11.3         73           3
 T threonine           6.4         41           2
 V valine              6.7         43           2
 W tryptophan          1.2          8           1
 Y tyrosine            1.9         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2040019 
LOC100293440          0.159   PREDICTED: similar to Ig lambda chain 
LOC100293277          0.105   PREDICTED: similar to hCG2040021 
LOC100290481          0.073   PREDICTED: hypothetical protein XP_002348153 
LOC651536             0.059   PREDICTED: similar to hCG96018 
LOC651536             0.059   PREDICTED: similar to hCG96018 
LOC100291682          0.056   PREDICTED: similar to hCG1686089 
LOC100290992          0.056   PREDICTED: hypothetical protein XP_002347049 
LOC440871             0.056   PREDICTED: similar to hCG2043206 
LOC100291786          0.054   PREDICTED: similar to hCG2043206 
LOC100130100          0.054   PREDICTED: similar to hCG26659 
LOC100291464          0.054   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.054   PREDICTED: similar to hCG26659 
LOC652493             0.051   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC642424             0.050   PREDICTED: similar to hCG1742442 
LOC642424             0.050   PREDICTED: similar to hCG1742442 
LOC642424             0.050   PREDICTED: similar to hCG1742442 
LOC728438             0.049   PREDICTED: hypothetical protein 
LOC728253             0.049   PREDICTED: hypothetical protein 
LOC728216             0.049   PREDICTED: hypothetical protein 
LOC727996             0.049   PREDICTED: hypothetical protein 
LOC650405             0.049   PREDICTED: similar to hCG2042707 
LOC100291027          0.047   PREDICTED: hypothetical protein XP_002348323 
LOC100132426          0.047   PREDICTED: similar to hCG1742442 
LOC100288993          0.047   PREDICTED: hypothetical protein XP_002342967 
LOC100287723          0.046   PREDICTED: hypothetical protein XP_002342271 
LOC642838             0.046   PREDICTED: similar to hCG1742442 
LOC439957             0.045   PREDICTED: similar to hCG1742442 
LOC439957             0.045   PREDICTED: similar to hCG1742442 
LOC100291731          0.040   PREDICTED: similar to hCG36857 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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