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Search of human proteins with 239742598
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742598 PREDICTED: hypothetical protein [Homo sapiens]
(296 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742598 PREDICTED: hypothetical protein [Homo sapiens] 616 e-177
gi|239754052 PREDICTED: hypothetical protein [Homo sapiens] 608 e-174
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 56 3e-08
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 45 8e-05
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 45 8e-05
gi|239753698 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|239748278 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 42 5e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 42 5e-04
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 42 8e-04
gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens] 42 8e-04
gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens] 41 0.001
gi|19924099 synapsin I isoform Ia [Homo sapiens] 41 0.001
gi|19924097 synapsin I isoform Ib [Homo sapiens] 41 0.001
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 41 0.001
gi|190014615 hypothetical protein LOC157983 [Homo sapiens] 40 0.002
gi|239756603 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo ... 40 0.003
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 39 0.005
gi|4758410 fragile X mental retardation syndrome related protein... 39 0.005
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 39 0.007
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 39 0.007
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 39 0.007
gi|239755652 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
gi|239750190 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
>gi|239742598 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 616 bits (1588), Expect = e-177
Identities = 296/296 (100%), Positives = 296/296 (100%)
Query: 1 MGCHYIAEYLSNLEKWQPLNHRLSNSVLLGLSNSALGAMASLTCLCYSLANSGTALPAGE 60
MGCHYIAEYLSNLEKWQPLNHRLSNSVLLGLSNSALGAMASLTCLCYSLANSGTALPAGE
Sbjct: 1 MGCHYIAEYLSNLEKWQPLNHRLSNSVLLGLSNSALGAMASLTCLCYSLANSGTALPAGE 60
Query: 61 GDLHQVVIFESTRYDTHAASQTLKSHPRLPKPKQSARTPSIQVGRGRGEGAASRSCEPAR 120
GDLHQVVIFESTRYDTHAASQTLKSHPRLPKPKQSARTPSIQVGRGRGEGAASRSCEPAR
Sbjct: 61 GDLHQVVIFESTRYDTHAASQTLKSHPRLPKPKQSARTPSIQVGRGRGEGAASRSCEPAR 120
Query: 121 GGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGP 180
GGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGP
Sbjct: 121 GGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGP 180
Query: 181 PTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSR 240
PTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSR
Sbjct: 181 PTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSR 240
Query: 241 ANEWSRRLLAGDLRPVPGRTARGCQGECGCLPLAPDARLLVAGRPRPTVPSDDVTH 296
ANEWSRRLLAGDLRPVPGRTARGCQGECGCLPLAPDARLLVAGRPRPTVPSDDVTH
Sbjct: 241 ANEWSRRLLAGDLRPVPGRTARGCQGECGCLPLAPDARLLVAGRPRPTVPSDDVTH 296
>gi|239754052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 296
Score = 608 bits (1568), Expect = e-174
Identities = 292/296 (98%), Positives = 294/296 (99%)
Query: 1 MGCHYIAEYLSNLEKWQPLNHRLSNSVLLGLSNSALGAMASLTCLCYSLANSGTALPAGE 60
MGCHYIAEYLSNLEKWQPLNHRLSNSVLLGLSNSALGAMASLTCLCYSLANSGTALPAGE
Sbjct: 1 MGCHYIAEYLSNLEKWQPLNHRLSNSVLLGLSNSALGAMASLTCLCYSLANSGTALPAGE 60
Query: 61 GDLHQVVIFESTRYDTHAASQTLKSHPRLPKPKQSARTPSIQVGRGRGEGAASRSCEPAR 120
GDLHQVVIFESTRYDTHAASQTLKSHPRLPKPKQSARTPSIQVGRGRGEGAASRSCEPAR
Sbjct: 61 GDLHQVVIFESTRYDTHAASQTLKSHPRLPKPKQSARTPSIQVGRGRGEGAASRSCEPAR 120
Query: 121 GGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGP 180
GGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGP
Sbjct: 121 GGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGP 180
Query: 181 PTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSR 240
PTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSR
Sbjct: 181 PTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSR 240
Query: 241 ANEWSRRLLAGDLRPVPGRTARGCQGECGCLPLAPDARLLVAGRPRPTVPSDDVTH 296
ANEWSRRLL+G+LRP P RTARGCQGECGCLPLAPDARLLVAGRPRPTVPSDDVTH
Sbjct: 241 ANEWSRRLLSGELRPEPDRTARGCQGECGCLPLAPDARLLVAGRPRPTVPSDDVTH 296
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 56.2 bits (134), Expect = 3e-08
Identities = 55/178 (30%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 84 KSHPRLPKPKQSARTPSIQVGRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRT 143
+SH R + K + TPS ++GR R A R +R +R + + WRR +
Sbjct: 462 RSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQR 521
Query: 144 WGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAG---A 200
WGR RR SP +RP +R + + + R RS S G +
Sbjct: 522 WGRSR----SPQRRGRSRSP--QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRS 575
Query: 201 RGPAR--PSRPHPAVRAGERERTHLR-----RAPGAAGRARE----RRRSRANEWSRR 247
R PAR SR R R RT R R P GR+R RRRSR RR
Sbjct: 576 RTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRR 633
Score = 43.9 bits (102), Expect = 2e-04
Identities = 50/164 (30%), Positives = 64/164 (39%), Gaps = 11/164 (6%)
Query: 93 KQSARTPSIQVGRGRGEGAA----SRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHT 148
++ R+ S + GR A SRS PAR G R R + R RR T
Sbjct: 549 QRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRT 608
Query: 149 PYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPSR 208
P R + A SR + V R + P G R A + +R PAR R
Sbjct: 609 PARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGR 668
Query: 209 PH---PAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLL 249
PA R+G R R+ R P GR+R R R SR L+
Sbjct: 669 SRSRTPARRSG-RSRS---RTPARRGRSRSRTPRRGRSRSRSLV 708
Score = 41.2 bits (95), Expect = 0.001
Identities = 50/177 (28%), Positives = 70/177 (39%), Gaps = 10/177 (5%)
Query: 76 THAASQTLKSHPRLPKPKQSARTPSIQVGRGRGEGAASRSCEPARGGGERRRAFPHTKWW 135
+ + + T + H R P+ + + GR R RS P R G R R
Sbjct: 495 SRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSR-----NTQ 549
Query: 136 RRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGL 195
RRG R + PA R + + +RR P+ + + RRRS S
Sbjct: 550 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTP 609
Query: 196 VLAG---ARGPA-RPSRPHPAVRAGERERTHLRRAPGAAGRARERR-RSRANEWSRR 247
G +R PA R SR VR R R+ RR+ + R RR RSR+ +RR
Sbjct: 610 ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARR 666
Score = 38.5 bits (88), Expect = 0.007
Identities = 58/200 (29%), Positives = 75/200 (37%), Gaps = 24/200 (12%)
Query: 87 PRLPKPK---QSARTPSIQVGRGRG-EGAASRSCEP-----ARGGGERRRAFPHTKWWRR 137
P+ P P+ + +R+ S GRG EG++S P +R R+ P K R
Sbjct: 1624 PKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSR 1683
Query: 138 GGGRRTWGRHTPYGIPADR-----RQLDASPG--SRRPALVCARPSPQGPPTA----GGP 186
RR R +P R R +SP SR P PS P A
Sbjct: 1684 TPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSR 1743
Query: 187 RRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSR 246
RRRS S+ +R R P P R +R R+ RR R R+R S + SR
Sbjct: 1744 RRRSASSPRTKTTSR---RGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGS-SQSTSR 1799
Query: 247 RLLAGDLRPVPGRTARGCQG 266
R R R RG G
Sbjct: 1800 RRQRSRSRSRVTRRRRGGSG 1819
Score = 34.7 bits (78), Expect = 0.10
Identities = 53/178 (29%), Positives = 69/178 (38%), Gaps = 22/178 (12%)
Query: 84 KSHPRLP--KPKQSARTPSIQVGRGRGEGAA---SRSCEPARGGGERRRAFPHTKWWR-R 137
+SH R P + + +RTP+ + GR R A SRS P R RR+ T R R
Sbjct: 561 RSHSRSPATRGRSRSRTPARR-GRSRSRTPARRRSRSRTPTR-----RRSRSRTPARRGR 614
Query: 138 GGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVL 197
R R + P RR SP R P+ +G + P RR S
Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTP 674
Query: 198 AGARG------PAR--PSRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRR 247
A G PAR SR R R R+ +RR G + +RR R+ S R
Sbjct: 675 ARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRR--GRSHSRTPQRRGRSGSSSER 730
Score = 33.9 bits (76), Expect = 0.18
Identities = 52/189 (27%), Positives = 70/189 (37%), Gaps = 37/189 (19%)
Query: 89 LPKPKQSARTPSIQVGRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHT 148
L + + +R + R R +S+S R +R R+ RRGG G H+
Sbjct: 1770 LQRSRSRSRREKTRTTRRRDRSGSSQSTSRRR---QRSRSRSRVTRRRRGGS----GYHS 1822
Query: 149 PYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPSR 208
+ RQ + SRR R + PPT+ R+RS S R +R S
Sbjct: 1823 R----SPARQESSRTSSRR-----RRGRSRTPPTS---RKRSRSRTSPAPWKRSRSRAS- 1869
Query: 209 PHPAVRAGERERTHL---------------RRAPGAAGRARERRRSRANEWSRRLLAGDL 253
PA R RT L RR+ R R RSRA+ SRR
Sbjct: 1870 --PATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRT 1927
Query: 254 RPVPGRTAR 262
PV R +R
Sbjct: 1928 PPVTRRRSR 1936
Score = 33.5 bits (75), Expect = 0.23
Identities = 58/183 (31%), Positives = 73/183 (39%), Gaps = 25/183 (13%)
Query: 93 KQSARTPSIQVGRGRG-EGAASRSC---EPARGGGERRRAFPHTKWWRRGGGRRTWGRHT 148
+Q +R+ S R RG G SRS E +R RRR T R +R+ R +
Sbjct: 1801 RQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSR---KRSRSRTS 1857
Query: 149 PYGIPADRRQLDASPG------SRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARG 202
P P R + ASP SR P + R + P + RRRS S V R
Sbjct: 1858 P--APWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVS---RRRSRSRTSV---TRR 1909
Query: 203 PARPSRPHPAVRAGERERTH---LRRAPGAAGRARERRRSRANEWSRRLLAGDLRPVPGR 259
+R SR P R R RT RR+ R R RSR +RR PV R
Sbjct: 1910 RSR-SRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRR 1968
Query: 260 TAR 262
+R
Sbjct: 1969 RSR 1971
Score = 33.1 bits (74), Expect = 0.30
Identities = 43/173 (24%), Positives = 66/173 (38%), Gaps = 25/173 (14%)
Query: 90 PKPKQSARTPSIQVGRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTP 149
P PKQ ++TP + G + A P R R + P K + R++ +P
Sbjct: 784 PCPKQKSQTPPRRSRSGSSQPKAKSRTPPRR---SRSSSSPPPKQKSKTPSRQSHSSSSP 840
Query: 150 Y-----GIPADRRQLDASPGSRRPALV-----CARPSPQGPPTAGGPRRRSVSAG----- 194
+ G P R+ SP + ++ C SP + P R S S
Sbjct: 841 HPKVKSGTP-PRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRV 899
Query: 195 -LVLAGARGPARPSRPHPAVRA--GERERTHLRRAPGAAGRARER---RRSRA 241
+ P+R S P P V+A R+R+H + + R R RRSR+
Sbjct: 900 KSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRS 952
Score = 30.0 bits (66), Expect = 2.5
Identities = 54/198 (27%), Positives = 74/198 (37%), Gaps = 47/198 (23%)
Query: 84 KSHPRLPKPKQS-ARTPSIQVGRGRGEGAA----SRSCEPARGGGERRRAFPHTKWWRRG 138
+S R P ++S +R+P+ + GR R A SRS PAR G R R RR
Sbjct: 624 RSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPA-----RRS 678
Query: 139 GGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRR-RSVSAGLVL 197
G R SR PA +G + PRR RS S LV
Sbjct: 679 GRSR----------------------SRTPA-------RRGRSRSRTPRRGRSRSRSLVR 709
Query: 198 AG---ARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLLAGDLR 254
G +R P R R + + RT RR+ + + E ++SR + R L+
Sbjct: 710 RGRSHSRTPQRRGRSGSSSERKNKSRTSQRRS--RSNSSPEMKKSRISSRRSRSLSSPRS 767
Query: 255 PVPGRTA--RGCQGECGC 270
R + R G C
Sbjct: 768 KAKSRLSLRRSLSGSSPC 785
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 45.1 bits (105), Expect = 8e-05
Identities = 68/244 (27%), Positives = 86/244 (35%), Gaps = 60/244 (24%)
Query: 88 RLPKPKQSARTPSIQVGRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRH 147
R P+P AR + RGRG A R PA G ++ + R
Sbjct: 223 RAPRPAPRAREEAAAGSRGRG--GAER---PAARGSAQQPPLARLLLASAVSLAASLARS 277
Query: 148 TPYGIPADRRQLDASP--------GSRRPALV-----CARPSPQGPPTAGGPRRRSVSAG 194
P P R ASP GSR P+L C R + + P G P RS+S G
Sbjct: 278 PP---PLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRG 334
Query: 195 LVLAGARGPARPSRPHPAVRAGERERTHLRR------------APGAAGRARERRRSRAN 242
+ GAR R GE R RR P A GRA ERR +R
Sbjct: 335 GEVVGAR----------RRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAAR-- 382
Query: 243 EWSRRLLAGDLRPVPGRTARG--------CQGECGCLPLAPDA-------RLLVAGRPRP 287
+W +R + P G G +G CL +P R + A PR
Sbjct: 383 QWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRL 442
Query: 288 TVPS 291
+ PS
Sbjct: 443 SAPS 446
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 45.1 bits (105), Expect = 8e-05
Identities = 68/244 (27%), Positives = 86/244 (35%), Gaps = 60/244 (24%)
Query: 88 RLPKPKQSARTPSIQVGRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRH 147
R P+P AR + RGRG A R PA G ++ + R
Sbjct: 223 RAPRPAPRAREEAAAGSRGRG--GAER---PAARGSAQQPPLARLLLASAVSLAASLARS 277
Query: 148 TPYGIPADRRQLDASP--------GSRRPALV-----CARPSPQGPPTAGGPRRRSVSAG 194
P P R ASP GSR P+L C R + + P G P RS+S G
Sbjct: 278 PP---PLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRG 334
Query: 195 LVLAGARGPARPSRPHPAVRAGERERTHLRR------------APGAAGRARERRRSRAN 242
+ GAR R GE R RR P A GRA ERR +R
Sbjct: 335 GEVVGAR----------RRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAAR-- 382
Query: 243 EWSRRLLAGDLRPVPGRTARG--------CQGECGCLPLAPDA-------RLLVAGRPRP 287
+W +R + P G G +G CL +P R + A PR
Sbjct: 383 QWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGPRL 442
Query: 288 TVPS 291
+ PS
Sbjct: 443 SAPS 446
>gi|239753698 PREDICTED: hypothetical protein [Homo sapiens]
Length = 416
Score = 44.3 bits (103), Expect = 1e-04
Identities = 62/214 (28%), Positives = 75/214 (35%), Gaps = 43/214 (20%)
Query: 90 PKPKQSARTPS-----IQVGRGRGEGAASRSCEPARGGGERRRAFP-----HTKWWR--R 137
P P+ +A P + R +R EP R GERRRA P TK W+
Sbjct: 91 PTPRSAAEAPPGSAIPAHLPRSVQRVLGARRTEP-RSAGERRRALPAAAGRKTKTWQSQN 149
Query: 138 GGGRRTWGRHT----PYGIPADRRQLDASP-GSRRPALVCARPSPQGPPTAGGPRRRSVS 192
R HT P P R + SP G P++ P P+ P R R S
Sbjct: 150 QSPRSARAPHTAGAGPGPGPEPRGRRSHSPLGFFSPSVPSRSPLPEREPERTDDRSRVES 209
Query: 193 AGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRL---- 248
+ RG SR H R RRA R RERR+ R S +L
Sbjct: 210 SARAGDQRRGREPTSRDH---------RAATRRAAHGPFRRRERRKPRPRSESSQLACHL 260
Query: 249 --------LAGDLRPV----PGRTARGCQGECGC 270
+A RPV PGR G GC
Sbjct: 261 DLCFKWLPVASSRRPVAEAEPGRPEFGSASTRGC 294
>gi|239748278 PREDICTED: hypothetical protein [Homo sapiens]
Length = 416
Score = 44.3 bits (103), Expect = 1e-04
Identities = 62/214 (28%), Positives = 75/214 (35%), Gaps = 43/214 (20%)
Query: 90 PKPKQSARTPS-----IQVGRGRGEGAASRSCEPARGGGERRRAFP-----HTKWWR--R 137
P P+ +A P + R +R EP R GERRRA P TK W+
Sbjct: 91 PTPRSAAEAPPGSAIPAHLPRSVQRVLGARRTEP-RSAGERRRALPAAAGRKTKTWQSQN 149
Query: 138 GGGRRTWGRHT----PYGIPADRRQLDASP-GSRRPALVCARPSPQGPPTAGGPRRRSVS 192
R HT P P R + SP G P++ P P+ P R R S
Sbjct: 150 QSPRSARAPHTAGAGPGPGPEPRGRRSHSPLGFFSPSVPSRSPLPEREPERTDDRSRVES 209
Query: 193 AGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRL---- 248
+ RG SR H R RRA R RERR+ R S +L
Sbjct: 210 SARAGDQRRGREPTSRDH---------RAATRRAAHGPFRRRERRKPRPRSESSQLACHL 260
Query: 249 --------LAGDLRPV----PGRTARGCQGECGC 270
+A RPV PGR G GC
Sbjct: 261 DLCFKWLPVASSRRPVAEAEPGRPEFGSASTRGC 294
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 42.4 bits (98), Expect = 5e-04
Identities = 50/170 (29%), Positives = 65/170 (38%), Gaps = 23/170 (13%)
Query: 73 RYDTHAASQTLKSHPRLPKPKQSARTPSIQVG-RGRGEGAASRSCEPAR----GGGERRR 127
R + A ++ RLP R P + R RG G +R E R G G R
Sbjct: 719 RAENSTAKPFKRTEIRLPGALALGRRPEVTSRVRARGPGGENRDVEAQRLVPDGDG---R 775
Query: 128 AFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPR 187
P GG R+ + +P G R SP + P P+ PPTA P
Sbjct: 776 TSPL-------GGARSSSQRSPVGPAGVRSPRPGSPQMQASPSPGIAPKPKTPPTAPEP- 827
Query: 188 RRSVSA-----GLVLAGARGPARP--SRPHPAVRAGERERTHLRRAPGAA 230
+V A L LAG PA+P + P R+ + RR PGAA
Sbjct: 828 AAAVQAPLPREPLALAGRTAPAQPRAASAPPTDRSPQSPSQGARRQPGAA 877
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 42.4 bits (98), Expect = 5e-04
Identities = 55/199 (27%), Positives = 69/199 (34%), Gaps = 36/199 (18%)
Query: 70 ESTRYDTHAASQTLKSHPRLPKPKQSARTPSIQVGRGRGEGAASRSCEPARGGGERRRAF 129
ES +H S P L +R+PS + R EG + S R G R +
Sbjct: 246 ESPGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGS---QRSSGSRSPSP 302
Query: 130 PHTKWW----RRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGG 185
W R GG + G H PGS SP P++
Sbjct: 303 SGGSGWGSPQRNGGSGQRSGAH------------GGRPGSAH--------SPPDKPSSPS 342
Query: 186 PRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWS 245
PR R +A A A P + P+ R+ + RA G AGR R RRR R S
Sbjct: 343 PRVRDKAA----AAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRS 398
Query: 246 -----RRLLAGDLRPVPGR 259
RR RP P R
Sbjct: 399 SASAPRRRGRRRPRPAPPR 417
Score = 34.3 bits (77), Expect = 0.13
Identities = 53/211 (25%), Positives = 74/211 (35%), Gaps = 46/211 (21%)
Query: 72 TRYDTHAASQTLKSHPRLPKPKQSARTPS---IQVGRGRGEGAASRSCEPARGGGERRRA 128
+R A + + PR P+ S+R+ S G G GA EP G ER
Sbjct: 396 SRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEP---GSERGHG 452
Query: 129 FPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAG--GP 186
G G+R R P R SP P R P+G ++ GP
Sbjct: 453 ---------GHGKRAKER------PPRARPASTSPS---PGAHGRRGGPEGKSSSRSPGP 494
Query: 187 RRRSVSAGLVLAGARGPARPSRPHPAVRA-------------------GERERTHLRRAP 227
RS S+ + +R + RPH R+ E E T RR
Sbjct: 495 HPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRS 554
Query: 228 GAAGRARERRRSRANEWS-RRLLAGDLRPVP 257
+ R+RRR + RR+ + RP+P
Sbjct: 555 RSYSPIRKRRRDSPSFMEPRRITSARKRPIP 585
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 41.6 bits (96), Expect = 8e-04
Identities = 54/186 (29%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 146 RHTPYGIPADRRQLDASP--------GSRRPALV-----CARPSPQGPPTAGGPRRRSVS 192
R P P R ASP GSR P+L C R + + P G P RS+S
Sbjct: 179 RPLPKPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLS 238
Query: 193 AGLVLAGARGPARPSRPHPAVRAGERERTHLRR------------APGAAGRARERRRSR 240
G + GAR R GE R RR P A GRA ERR +R
Sbjct: 239 RGGEVVGAR----------RRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGERRAAR 288
Query: 241 ANEWSRRLLAGDLRPVPGRTARG--------CQGECGCLPLAPDA-------RLLVAGRP 285
+W +R + P G G +G CL +P R + A P
Sbjct: 289 --QWRKRGGGPGVSPREGAQGEGVRGGVTPRARGSSTCLRPSPATWQGGAPYRAIFAAGP 346
Query: 286 RPTVPS 291
R + PS
Sbjct: 347 RLSAPS 352
Score = 32.7 bits (73), Expect = 0.39
Identities = 51/170 (30%), Positives = 62/170 (36%), Gaps = 45/170 (26%)
Query: 162 SPGSRRPALVCARPSPQGPPT--------AGGPRRRSVSAGLV-LAGAR----------- 201
SP +R P + P+PQ PPT A V A L+ L G+R
Sbjct: 37 SPTARAPPPIL--PAPQRPPTRAREWEGAAWAAGATGVGAALLALPGSRRLGRVPLTFRE 94
Query: 202 ---GPARPSRPHPAVRAGERERTHLRRAPGAAGR--------ARERRRSRANEWSRRLLA 250
GPA P P G RRAP +AG+ A R+RS A R +
Sbjct: 95 ASPGPA-PGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAPPRQRSLA-RCLPRSVG 152
Query: 251 GDLRPV--PGRTARGCQGECGC------LPLAP--DARLLVAGRPRPTVP 290
+RP P R C+ C C LP P RL A PR P
Sbjct: 153 SCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRLGSASPPRLAAP 202
>gi|89276756 serine/threonine-protein kinase PRP4K [Homo sapiens]
Length = 1007
Score = 41.6 bits (96), Expect = 8e-04
Identities = 50/161 (31%), Positives = 65/161 (40%), Gaps = 23/161 (14%)
Query: 90 PKPKQSAR---TPSIQVGRGRGEGAASRSCEPARGGG----ERRRAFPHTKWWRRGGGRR 142
PKP+ +R +P + R + + SR+ P R ER+R P RR R
Sbjct: 357 PKPRDKSRRSRSPLLNDRRSKQSKSPSRTLSPGRRAKSRSLERKRREPER---RRLSSPR 413
Query: 143 TWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARG 202
T R + R DASP +R SP + RRRS S L +R
Sbjct: 414 TRPRDDI--LSRRERSKDASPINRW--------SPTRRRSRSPIRRRSRSP---LRRSRS 460
Query: 203 PARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANE 243
P R SR G R R+ LRR + G R R RS+ E
Sbjct: 461 PRRRSRSPRRRDRGRRSRSRLRRRSRSRGGRRRRSRSKVKE 501
Score = 37.7 bits (86), Expect = 0.012
Identities = 52/173 (30%), Positives = 65/173 (37%), Gaps = 16/173 (9%)
Query: 91 KPKQSARTPSIQVGRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTPY 150
K K ++P I R R G SRS RG + RR+ + +R T P
Sbjct: 270 KSKDRKKSPIINESRSRDRGKKSRSPVDLRGKSKDRRSRSKERKSKRS---ETDKEKKPI 326
Query: 151 GIPADRRQLDASPG------SRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPA 204
P+ DAS G SRRP R S P RRS S L ++
Sbjct: 327 KSPSK----DASSGKENRSPSRRPGRSPKRRSLS--PKPRDKSRRSRSPLLNDRRSKQSK 380
Query: 205 RPSRP-HPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLLAGDLRPV 256
PSR P RA R RR P + R R R + SRR + D P+
Sbjct: 381 SPSRTLSPGRRAKSRSLERKRREPERRRLSSPRTRPRDDILSRRERSKDASPI 433
>gi|14150185 zinc finger, BED-type containing 3 [Homo sapiens]
Length = 234
Score = 41.2 bits (95), Expect = 0.001
Identities = 43/126 (34%), Positives = 51/126 (40%), Gaps = 12/126 (9%)
Query: 154 ADRRQLDAS-PGSRRPALVCARPSPQGP---PTAGGPRRRSVSAGLVLAGARGPARPSRP 209
A RR+L++S GS PA C P P GP P R L + G+R R
Sbjct: 96 AHRRELESSGAGSSPPAAPC--PPPPGPAAAPEGDWARLLEQMGALAVRGSRRERELERR 153
Query: 210 HPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLLAGDLRPVPGRTARGCQGECG 269
AV GER RRA RA + R R + R L LR V R +G G
Sbjct: 154 ELAVEQGERALERRRRALQEEERAAAQAR-RELQAEREALQARLRDVSRR-----EGALG 207
Query: 270 CLPLAP 275
P AP
Sbjct: 208 WAPAAP 213
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 41.2 bits (95), Expect = 0.001
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 22/157 (14%)
Query: 88 RLPKPKQSARTPSIQVGRG-RGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGR 146
RLP P + + P+ Q +G+G SR G R P + +R G R
Sbjct: 507 RLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARP-PASPSPQRQAGPPQATR 565
Query: 147 HTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARP 206
T PA + A PG ++ + PQ PP GP R++ AG V GP
Sbjct: 566 QTSVSGPAPPKASGAPPGGQQ-----RQGPPQKPPGPAGPTRQASQAGPV--PRTGPPTT 618
Query: 207 SRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANE 243
+P P+ PG AGR + + + ++
Sbjct: 619 QQPRPS-------------GPGPAGRPKPQLAQKPSQ 642
Score = 31.6 bits (70), Expect = 0.87
Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 9/146 (6%)
Query: 87 PRLPKPKQSARTPSIQVGRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTW-- 144
P P P++ A P + G A A GG++R+ P G R+
Sbjct: 549 PASPSPQRQAGPPQA-TRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQA 607
Query: 145 GRHTPYGIPADRRQLDASPG--SRRPALVCARPSPQGPP----TAGGPRRRSVSAGLVLA 198
G G P ++ + PG R + +PS PP AGGP ++ L
Sbjct: 608 GPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLT 667
Query: 199 GARGPARPSRPHPAVRAGERERTHLR 224
A P+ P P++ E + +R
Sbjct: 668 NAFNLPEPAPPRPSLSQDEVKAETIR 693
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 41.2 bits (95), Expect = 0.001
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 22/157 (14%)
Query: 88 RLPKPKQSARTPSIQVGRG-RGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGR 146
RLP P + + P+ Q +G+G SR G R P + +R G R
Sbjct: 507 RLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARP-PASPSPQRQAGPPQATR 565
Query: 147 HTPYGIPADRRQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARP 206
T PA + A PG ++ + PQ PP GP R++ AG V GP
Sbjct: 566 QTSVSGPAPPKASGAPPGGQQ-----RQGPPQKPPGPAGPTRQASQAGPV--PRTGPPTT 618
Query: 207 SRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANE 243
+P P+ PG AGR + + + ++
Sbjct: 619 QQPRPS-------------GPGPAGRPKPQLAQKPSQ 642
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 40.8 bits (94), Expect = 0.001
Identities = 49/159 (30%), Positives = 54/159 (33%), Gaps = 38/159 (23%)
Query: 111 AASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPAL 170
AAS + P + G R R P T + G RR PG RRPA
Sbjct: 18 AASTTWVPCQICGPRERHGPRTPGGQLPGARR-------------------GPGPRRPA- 57
Query: 171 VCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRA---GERERTHLRRAP 227
P P PP A G R + AR RP RPHPA R T R P
Sbjct: 58 ----PLPARPPGALGSVLRPLR-------ARPGCRPRRPHPAARCLPLRPHRPTRRHRRP 106
Query: 228 G----AAGRARERRRSRANEWSRRLLAGDLRPVPGRTAR 262
G A G + R S LAG P R R
Sbjct: 107 GGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQR 145
>gi|190014615 hypothetical protein LOC157983 [Homo sapiens]
Length = 295
Score = 40.4 bits (93), Expect = 0.002
Identities = 66/221 (29%), Positives = 76/221 (34%), Gaps = 58/221 (26%)
Query: 106 GRGEGAASRSCEPAR-----GGGERRRAFPHTKWWRRGGGRRTWGR-HTPYGIPADRRQL 159
G GAA+R P G RRA P T+ G G + HT G+ R L
Sbjct: 58 GPSAGAAARPAAPPPQPREPGAPGLRRAPPRTRMDSSGLGPCSEAPLHTSAGLSG--RNL 115
Query: 160 DASPG------SRRPALVCARPSPQGPPT-----------AGGPRRRSV-------SAGL 195
A+ G R A +CAR S GPP +GG RR V SA L
Sbjct: 116 RAAGGVLPVDLERERAALCARQSGHGPPAVRWLLGSRGAESGGLARRRVAAEHAQPSANL 175
Query: 196 VL-----AGARGPARPSRPHPAVRA----GERERTHLRRAPGAAGRARERRRSRANEWSR 246
V A P++P P VRA G R G G + W R
Sbjct: 176 VCRSALETSAFPPSKPKSPRGRVRARSSDGRLRHPAWRAGSGGRGGRGPSAELASRYWGR 235
Query: 247 RLL---AGDLRPVPGRTARGCQGECGCLPLAPDARLLVAGR 284
R A DLRP R A D R L AGR
Sbjct: 236 RRALPGAADLRPKGAR--------------ADDRRPLRAGR 262
>gi|239756603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 40.0 bits (92), Expect = 0.002
Identities = 44/132 (33%), Positives = 54/132 (40%), Gaps = 24/132 (18%)
Query: 111 AASRSCEP---ARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRR 167
A+SR P ARG RR W GGGRR W +P D +L P
Sbjct: 10 ASSRRTRPRRVARGLCRRRGVLAPAGWGFLGGGRRPW------AVP-DPVRLTLFPS--- 59
Query: 168 PALVCARPSP--QGPPTAGGPRRRSVSAGLVLAGARGPARPSRP----HPAVRAGERERT 221
C RP QG + GG R+R+ + L GPA PS P PA+R R
Sbjct: 60 ---CCLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPPSLPPNQARPALRMSTAARP 116
Query: 222 HLRRAPGAAGRA 233
++ PG RA
Sbjct: 117 RVK--PGRFPRA 126
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 39.7 bits (91), Expect = 0.003
Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 17/144 (11%)
Query: 105 RGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPG 164
R + AA RGGGE++ A TK GGR GR P R Q A+ G
Sbjct: 86 RQHWQKAAGAGGAENRGGGEQKAAAAGTKSL---GGR---GRK-----PRRRGQKAAATG 134
Query: 165 SRRPALVCARPSPQGPPTAG-GPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHL 223
S++P + + G G G ++ + +AG+ G P + + R+G++ R
Sbjct: 135 SKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRR- 193
Query: 224 RRAPGAAGRARERRRSRANEWSRR 247
GA R E ++ R E R
Sbjct: 194 ----GAKSRGDEDKKGRQREAKSR 213
Score = 30.4 bits (67), Expect = 1.9
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 16/179 (8%)
Query: 112 ASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALV 171
AS + +RGGG+++ K RRG GR+ P RR+ +P ++
Sbjct: 373 ASAAGAKSRGGGDKK-GLREAK--RRGDGRKKPRWQNP------RRRAQKAPAAKPRGGG 423
Query: 172 CARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAG 231
+P +GP A +S S G RG + A ++ R+ AAG
Sbjct: 424 SKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAG 483
Query: 232 RARE----RRRSRANEWSR---RLLAGDLRPVPGRTARGCQGECGCLPLAPDARLLVAG 283
+ S N W R AG+ G +RG + P A+ V G
Sbjct: 484 TKSRGGGLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGG 542
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 39.7 bits (91), Expect = 0.003
Identities = 53/192 (27%), Positives = 73/192 (38%), Gaps = 39/192 (20%)
Query: 104 GRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASP 163
G G G ++ PAR ++RR RGG RR P R Q A+
Sbjct: 143 GGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARR----------PGVRGQGAAAV 192
Query: 164 GSRRPALVCARPSPQGPPTAGGPRR--RSVSAGLVLAGARGPARPSRPHPAVR---AGER 218
G P A PS + PP GPRR RS +G AR P+ P+ A+R + R
Sbjct: 193 GPTGPRPTGAPPSRRTPPP--GPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
Query: 219 ERTHLRRAPGAAGRA------RERRRSRANEWSRRLLAGDLRPVPGRTARGCQGECGCLP 272
L + A G A + R +W+R+L GC+ C C P
Sbjct: 251 APAPLTLSFSARGLAWAGESPASHQSERRWQWTRKL--------------GCR--CYCSP 294
Query: 273 LAPDARLLVAGR 284
L L ++ +
Sbjct: 295 LGSGESLSLSSK 306
>gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo
sapiens]
Length = 351
Score = 39.7 bits (91), Expect = 0.003
Identities = 59/227 (25%), Positives = 86/227 (37%), Gaps = 42/227 (18%)
Query: 58 AGEGDLHQVVIFEST--RYDTHAASQTLKSHPRLPKPKQSARTPSIQVGRGRGEGAASRS 115
A EGD +++ + R TL+SHP P P + S+ R + +++
Sbjct: 33 AAEGDADELLELPALLQRPAGRGPCATLRSHPITPAPALLLLSHSLPAQRRSMQATVAKA 92
Query: 116 CEPARG--GGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPALVC- 172
P RG G E RR R +W R P R+ SR + VC
Sbjct: 93 GSPGRGRLGKEPRR-------------RESWTRSAP-------RRCPYQDASRAGSRVCR 132
Query: 173 ARPSPQGPPTAGG---PRRRSVSAGLVLAGARGPARPSRPHPAVRAGERE----RTHLRR 225
+RP +G GG PRRR A G G +P R A AG ++ R R
Sbjct: 133 SRPQNRG----GGDKKPRRRGQKAAKSRGG--GGKKP-RGQKAAGAGAKKHRKPRRRGER 185
Query: 226 APGAAGRARER---RRSRANEWSRRLLAGDLRPVPGRTARGCQGECG 269
A A G+ ++ +SR + AG +P R + + G
Sbjct: 186 AAAAGGKKLQKAAAAKSRGGGGKKTAAAGGKKPRRRRGQKAAKSRGG 232
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 39.7 bits (91), Expect = 0.003
Identities = 53/192 (27%), Positives = 73/192 (38%), Gaps = 39/192 (20%)
Query: 104 GRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASP 163
G G G ++ PAR ++RR RGG RR P R Q A+
Sbjct: 143 GGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARR----------PGVRGQGAAAV 192
Query: 164 GSRRPALVCARPSPQGPPTAGGPRR--RSVSAGLVLAGARGPARPSRPHPAVR---AGER 218
G P A PS + PP GPRR RS +G AR P+ P+ A+R + R
Sbjct: 193 GPTGPRPTGAPPSRRTPPP--GPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
Query: 219 ERTHLRRAPGAAGRA------RERRRSRANEWSRRLLAGDLRPVPGRTARGCQGECGCLP 272
L + A G A + R +W+R+L GC+ C C P
Sbjct: 251 APAPLTLSFSARGLAWAGESPASHQSERRWQWTRKL--------------GCR--CYCSP 294
Query: 273 LAPDARLLVAGR 284
L L ++ +
Sbjct: 295 LGSGESLSLSSK 306
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 39.7 bits (91), Expect = 0.003
Identities = 53/192 (27%), Positives = 73/192 (38%), Gaps = 39/192 (20%)
Query: 104 GRGRGEGAASRSCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASP 163
G G G ++ PAR ++RR RGG RR P R Q A+
Sbjct: 143 GGGPGLPPRGKASGPARDSAQQRRRPTRRPRGTRGGARR----------PGVRGQGAAAV 192
Query: 164 GSRRPALVCARPSPQGPPTAGGPRR--RSVSAGLVLAGARGPARPSRPHPAVR---AGER 218
G P A PS + PP GPRR RS +G AR P+ P+ A+R + R
Sbjct: 193 GPTGPRPTGAPPSRRTPPP--GPRRPLRSPHSGSGWTPARPPSPPAGAPEALRPPASTTR 250
Query: 219 ERTHLRRAPGAAGRA------RERRRSRANEWSRRLLAGDLRPVPGRTARGCQGECGCLP 272
L + A G A + R +W+R+L GC+ C C P
Sbjct: 251 APAPLTLSFSARGLAWAGESPASHQSERRWQWTRKL--------------GCR--CYCSP 294
Query: 273 LAPDARLLVAGR 284
L L ++ +
Sbjct: 295 LGSGESLSLSSK 306
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 39.3 bits (90), Expect = 0.004
Identities = 56/195 (28%), Positives = 62/195 (31%), Gaps = 29/195 (14%)
Query: 99 PSIQVGRGRGEGAASRSCEPARGG--GERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADR 156
P+ G GA C PAR G RA R GRR P P
Sbjct: 59 PAASAGSQEHPGAGGPLCFPARSAAWGPPARA-------SRAAGRRAGPAGPPCRAPGRG 111
Query: 157 RQLDASPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAG 216
R A+ R PA AR SP G AGG S AG R P P
Sbjct: 112 R---AAATRRSPAPGTARGSPAGVERAGGATAAS------SAGTRSVPARRLPPPCGGTS 162
Query: 217 ERERTHLRRAPGAAGRARERRRSRANEWSRRLLAGDLRPVPGRTARGCQG--ECGCLPLA 274
+ R PG+A A R S + W+ P PG G G G A
Sbjct: 163 LGAGSRALRRPGSA--ALPRSPSSSRRWA-------AMPGPGAPRPGAPGTWPVGFAVAA 213
Query: 275 PDARLLVAGRPRPTV 289
P A P P V
Sbjct: 214 PPAAAASVAPPPPAV 228
Score = 34.3 bits (77), Expect = 0.13
Identities = 42/161 (26%), Positives = 56/161 (34%), Gaps = 19/161 (11%)
Query: 139 GGRRTWGRHTPYGIPADRRQLDASPGSRRPALVCARPSPQGPP---TAGGPRRRSVSAGL 195
G RR G P PA PG+ P AR + GPP + RR +
Sbjct: 47 GARR--GHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPP 104
Query: 196 VLAGARGPARPSRPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLLAGDLRP 255
A RG A +R PA + RA GA + ++ +R + A L P
Sbjct: 105 CRAPGRGRAAATRRSPAPGTARGSPAGVERAGGAT--------AASSAGTRSVPARRLPP 156
Query: 256 VPGRTARGCQGEC------GCLPLAPDARLLVAGRPRPTVP 290
G T+ G LP +P + A P P P
Sbjct: 157 PCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAP 197
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 38.9 bits (89), Expect = 0.005
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 162 SPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERT 221
S S+ P PSP PP PR R + L+L GA G A S P P + T
Sbjct: 7 SRASKGPGPTARAPSPGAPPPPRSPRSRPLLLLLLLLGACGAAGRS-PEPGRLGPHAQLT 65
Query: 222 HLRRAPGAAGRAR----ERRRSRANE 243
+ R+P AGRA E R++R E
Sbjct: 66 RVPRSP-PAGRAEPGGGEDRQARGTE 90
>gi|4758410 fragile X mental retardation syndrome related protein 2
[Homo sapiens]
Length = 673
Score = 38.9 bits (89), Expect = 0.005
Identities = 56/243 (23%), Positives = 80/243 (32%), Gaps = 52/243 (21%)
Query: 68 IFESTRYDTHAASQTLKSHPRLPKPKQSARTPSIQV--------------GRGRGEGAAS 113
IF TR + A L+ H + + R +Q+ G GRG G +
Sbjct: 346 IFVGTRENISNAQALLEYHLSYLQEVEQLRLERLQIDEQLRQIGLGFRPPGSGRGSGGSD 405
Query: 114 R---SCEPARGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDASPGSRRPAL 170
+ S + + + RG GRRT G YG +D + +R
Sbjct: 406 KAGYSTDESSSSSLHATRTYGGSYGGRGRGRRTGG--PAYGPSSDVSTASETESEKREEP 463
Query: 171 VCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPSRPHPAVRAGERERTHLRR----- 225
A P + PPT G RR + G RG P P P R + + +
Sbjct: 464 NRAGPGDRDPPTRGEESRRRPT------GGRGRGPPPAPRPTSRYNSSSISSVLKDPDSN 517
Query: 226 --------------------APGAAGRARERRRSRANEWSRRLLAGDLR-PVPGRTARGC 264
P A+ R R RR R +E R ++ G L P T G
Sbjct: 518 PYSLLDTSEPEPPVDSEPGEPPPASARRRRSRRRRTDE-DRTVMDGGLESDGPNMTENGL 576
Query: 265 QGE 267
+ E
Sbjct: 577 EDE 579
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 38.5 bits (88), Expect = 0.007
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 149 PYGIPADRRQLDASPGSRRPALVCARPSPQGPP-TAGGPRRRSVSAGLVLAGARGPARPS 207
P G+P R + PG R P G GGP + GA+GPA P+
Sbjct: 1972 PMGVPG-RDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPA 2030
Query: 208 RPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLLAGDLRPVPGRTARGCQGE 267
P + GE+ + R + GAAG E R R R+ G+ P G RG +GE
Sbjct: 2031 GPPGLI--GEQGISGPRGSGGAAGAPGE--RGRTGPLGRKGEPGEPGPKGGIGNRGPRGE 2086
Query: 268 CG 269
G
Sbjct: 2087 TG 2088
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 38.5 bits (88), Expect = 0.007
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 149 PYGIPADRRQLDASPGSRRPALVCARPSPQGPP-TAGGPRRRSVSAGLVLAGARGPARPS 207
P G+P R + PG R P G GGP + GA+GPA P+
Sbjct: 2178 PMGVPG-RDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPA 2236
Query: 208 RPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLLAGDLRPVPGRTARGCQGE 267
P + GE+ + R + GAAG E R R R+ G+ P G RG +GE
Sbjct: 2237 GPPGLI--GEQGISGPRGSGGAAGAPGE--RGRTGPLGRKGEPGEPGPKGGIGNRGPRGE 2292
Query: 268 CG 269
G
Sbjct: 2293 TG 2294
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 38.5 bits (88), Expect = 0.007
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 149 PYGIPADRRQLDASPGSRRPALVCARPSPQGPP-TAGGPRRRSVSAGLVLAGARGPARPS 207
P G+P R + PG R P G GGP + GA+GPA P+
Sbjct: 1571 PMGVPG-RDGVPGGPGETGKNGGFGRRGPPGAKGNKGGPGQPGFEGEQGTRGAQGPAGPA 1629
Query: 208 RPHPAVRAGERERTHLRRAPGAAGRARERRRSRANEWSRRLLAGDLRPVPGRTARGCQGE 267
P + GE+ + R + GAAG E R R R+ G+ P G RG +GE
Sbjct: 1630 GPPGLI--GEQGISGPRGSGGAAGAPGE--RGRTGPLGRKGEPGEPGPKGGIGNRGPRGE 1685
Query: 268 CG 269
G
Sbjct: 1686 TG 1687
>gi|239755652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/106 (33%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 108 GEGAASRSCEPA------RGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDA 161
G+G R PA GG R RA P R GG R + G+P+ RQL
Sbjct: 33 GQGCVRRRRHPALGALGAEGGSRRHRALPG-----RPGGPRGSRLSSRPGVPSRSRQLTP 87
Query: 162 SPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPS 207
PGS P + PP G P A +L G PA PS
Sbjct: 88 PPGS--PMASFGALATPDPPVGGAP------APALLPGQAPPALPS 125
>gi|239750190 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/106 (33%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 108 GEGAASRSCEPA------RGGGERRRAFPHTKWWRRGGGRRTWGRHTPYGIPADRRQLDA 161
G+G R PA GG R RA P R GG R + G+P+ RQL
Sbjct: 33 GQGCVRRRRHPALGALGAEGGSRRHRALPG-----RPGGPRGSRLSSRPGVPSRSRQLTP 87
Query: 162 SPGSRRPALVCARPSPQGPPTAGGPRRRSVSAGLVLAGARGPARPS 207
PGS P + PP G P A +L G PA PS
Sbjct: 88 PPGS--PMASFGALATPDPPVGGAP------APALLPGQAPPALPS 125
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,683,801
Number of Sequences: 37866
Number of extensions: 882748
Number of successful extensions: 6211
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 558
Number of HSP's that attempted gapping in prelim test: 5209
Number of HSP's gapped (non-prelim): 1492
length of query: 296
length of database: 18,247,518
effective HSP length: 102
effective length of query: 194
effective length of database: 14,385,186
effective search space: 2790726084
effective search space used: 2790726084
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.