Guide to the Human Genome
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Name: LOC100288944 Sequence: fasta or formatted (229aa) NCBI GI: 239742492
Description:

PREDICTED: hypothetical protein XP_002342529

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         21           3
 C cysteine            3.1          7           1
 D aspartate           2.2          5           2
 E glutamate           2.2          5           1
 F phenylalanine       3.5          8           2
 G glycine            11.8         27           5
 H histidine           1.7          4           1
 I isoleucine          0.9          2           1
 K lysine              2.2          5           1
 L leucine            14.0         32           5
 M methionine          0.9          2           1
 N asparagine          0.4          1           1
 P proline             7.4         17           1
 Q glutamine           6.1         14           2
 R arginine           17.0         39           5
 S serine              7.0         16           1
 T threonine           3.9          9           1
 V valine              4.8         11           2
 W tryptophan          1.3          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342529 
LOC100290331          1.000   PREDICTED: hypothetical protein XP_002346713 
LOC100292884          0.995   PREDICTED: similar to hCG1989907 
LOC100288302          0.034   PREDICTED: hypothetical protein XP_002343738 
GAR1                  0.027   nucleolar protein family A, member 1 
GAR1                  0.027   nucleolar protein family A, member 1 
LOC100289978          0.027   PREDICTED: hypothetical protein XP_002348035 
ADAMTS17              0.025   ADAM metallopeptidase with thrombospondin type 1 mo...
PTPRN                 0.025   protein tyrosine phosphatase, receptor type, N precur...
C1orf77               0.025   small protein rich in arginine and glycine 
LOC100289716          0.023   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.023   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.023   PREDICTED: hypothetical protein 
FLJ37078              0.023   hypothetical protein LOC222183 
COL23A1               0.023   collagen, type XXIII, alpha 1 
LOC339192             0.020   PREDICTED: hypothetical protein 
LOC339192             0.020   PREDICTED: hypothetical protein 
LOC339192             0.020   PREDICTED: hypothetical protein 
FZD8                  0.020   frizzled 8 
LOC100293812          0.020   PREDICTED: hypothetical protein 
LOC100290709          0.020   PREDICTED: hypothetical protein XP_002346752 
FBXO45                0.020   F-box protein 45 
LOC100292082          0.018   PREDICTED: hypothetical protein XP_002345881 
ARMCX1                0.018   armadillo repeat containing, X-linked 1 
LOC100130128          0.018   PREDICTED: hypothetical protein 
LOR                   0.018   loricrin 
LOC100292370          0.018   PREDICTED: hypothetical protein 
LOC100130128          0.018   PREDICTED: hypothetical protein 
LOC100130128          0.018   PREDICTED: hypothetical protein 
FOXD3                 0.018   forkhead box D3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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