Guide to the Human Genome
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Name: ARMCX1 Sequence: fasta or formatted (453aa) NCBI GI: 7706143
Description:

armadillo repeat containing, X-linked 1

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         39           2
 C cysteine            2.2         10           1
 D aspartate           4.0         18           2
 E glutamate           6.2         28           2
 F phenylalanine       3.8         17           2
 G glycine             9.1         41           3
 H histidine           1.5          7           1
 I isoleucine          5.7         26           2
 K lysine              8.6         39           2
 L leucine             9.7         44           2
 M methionine          1.3          6           1
 N asparagine          6.4         29           2
 P proline             3.5         16           1
 Q glutamine           2.2         10           1
 R arginine            5.1         23           2
 S serine              7.3         33           2
 T threonine           5.7         26           2
 V valine              6.4         29           2
 W tryptophan          0.9          4           1
 Y tyrosine            1.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   armadillo repeat containing, X-linked 1 
ARMCX3                0.334   armadillo repeat containing, X-linked 3 
ARMCX3                0.334   armadillo repeat containing, X-linked 3 
ARMCX3                0.334   armadillo repeat containing, X-linked 3 
ARMCX2                0.299   ALEX2 protein 
ARMCX2                0.299   ALEX2 protein 
ARMC10                0.275   SVH protein isoform a 
ARMC10                0.262   SVH protein isoform b 
LOC100292655          0.227   PREDICTED: similar to armadillo repeat containing, ...
LOC389137             0.220   PREDICTED: similar to SVH protein isoform 1 
ARMC10                0.218   SVH protein isoform e 
LOC389137             0.217   PREDICTED: similar to SVH protein isoform 1 
LOC389137             0.217   PREDICTED: similar to SVH protein isoform 2 
ARMC10                0.164   SVH protein isoform c 
LOC389137             0.160   PREDICTED: similar to SVH protein isoform 2 
LOC389137             0.156   PREDICTED: similar to SVH protein isoform 2 
LOC389137             0.156   PREDICTED: similar to SVH protein isoform 1 
ARMC10                0.153   SVH protein isoform d 
ARMCX5                0.145   armadillo repeat containing, X-linked 5 
GPRASP1               0.124   G protein-coupled receptor associated sorting prote...
GPRASP1               0.124   G protein-coupled receptor associated sorting prote...
GPRASP1               0.124   G protein-coupled receptor associated sorting prote...
GPRASP2               0.120   G protein-coupled receptor associated sorting protei...
GPRASP2               0.120   G protein-coupled receptor associated sorting protei...
BHLHB9                0.107   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.107   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.107   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.107   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.107   basic helix-loop-helix domain containing, class B, ...
BHLHB9                0.107   basic helix-loop-helix domain containing, class B, ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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