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Search of human proteins with 239742390
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742390 PREDICTED: hypothetical protein [Homo sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748448 PREDICTED: hypothetical protein [Homo sapiens] 615 e-176
gi|239742390 PREDICTED: hypothetical protein [Homo sapiens] 615 e-176
gi|239753898 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|48762934 alpha 2 type I collagen [Homo sapiens] 39 0.005
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 39 0.007
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 39 0.007
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.009
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 38 0.009
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.009
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 38 0.012
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 38 0.012
gi|239751535 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015
gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo ... 37 0.015
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 37 0.020
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 37 0.020
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.026
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 36 0.034
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 36 0.044
gi|239752864 PREDICTED: hypothetical protein [Homo sapiens] 36 0.044
gi|239747416 PREDICTED: hypothetical protein XP_002346693 [Homo ... 36 0.044
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 36 0.044
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 36 0.044
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 36 0.044
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.058
gi|239754714 PREDICTED: hypothetical protein [Homo sapiens] 35 0.058
gi|239749263 PREDICTED: hypothetical protein [Homo sapiens] 35 0.058
gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo ... 35 0.058
gi|239509052 PREDICTED: hypothetical protein [Homo sapiens] 35 0.058
>gi|239748448 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 615 bits (1586), Expect = e-176
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MNIFRFLMQWTQEHSQKDIPDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRP 60
MNIFRFLMQWTQEHSQKDIPDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRP
Sbjct: 1 MNIFRFLMQWTQEHSQKDIPDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRP 60
Query: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFS 120
APETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFS
Sbjct: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFS 120
Query: 121 PWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASPNL 180
PWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASPNL
Sbjct: 121 PWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASPNL 180
Query: 181 PPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFALVR 240
PPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFALVR
Sbjct: 181 PPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFALVR 240
Query: 241 RWPRRAVGTCTPPFPESGASDPPCPAAETGPARVPVTHLLRKTLP 285
RWPRRAVGTCTPPFPESGASDPPCPAAETGPARVPVTHLLRKTLP
Sbjct: 241 RWPRRAVGTCTPPFPESGASDPPCPAAETGPARVPVTHLLRKTLP 285
>gi|239742390 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 615 bits (1586), Expect = e-176
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MNIFRFLMQWTQEHSQKDIPDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRP 60
MNIFRFLMQWTQEHSQKDIPDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRP
Sbjct: 1 MNIFRFLMQWTQEHSQKDIPDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRP 60
Query: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFS 120
APETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFS
Sbjct: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFS 120
Query: 121 PWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASPNL 180
PWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASPNL
Sbjct: 121 PWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASPNL 180
Query: 181 PPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFALVR 240
PPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFALVR
Sbjct: 181 PPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFALVR 240
Query: 241 RWPRRAVGTCTPPFPESGASDPPCPAAETGPARVPVTHLLRKTLP 285
RWPRRAVGTCTPPFPESGASDPPCPAAETGPARVPVTHLLRKTLP
Sbjct: 241 RWPRRAVGTCTPPFPESGASDPPCPAAETGPARVPVTHLLRKTLP 285
>gi|239753898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 41.2 bits (95), Expect = 0.001
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 1 MNIFRFLMQWTQEHSQKDIPDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRP 60
MNIFRFLMQWTQEH ++ G +R+ R RR P+ D R
Sbjct: 1 MNIFRFLMQWTQEHRRRKKAAPSGGVRRRSTARAQRRRRAVCWASGRHRRNPDVED--RA 58
Query: 61 APETGCVLG-----QWKTPEKPRRGR-PGSL 85
A + ++G PE P+RG P SL
Sbjct: 59 AWTSRALVGLAAHRAPTCPELPQRGEGPPSL 89
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 38.9 bits (89), Expect = 0.005
Identities = 69/251 (27%), Positives = 82/251 (32%), Gaps = 55/251 (21%)
Query: 45 GSAKRRGPEALDGSRPAP----------ETGCVLGQWKTPEKP-RRGRPGSLDFASPGGA 93
G+A GP L G R A E G + G+ P + RG PG++ P GA
Sbjct: 631 GTAGPSGPSGLPGERGAAGIPGGKGEKGEPG-LRGEIGNPGRDGARGAPGAVGAPGPAGA 689
Query: 94 ---------GGPQSPHLPRAPTARRG-AAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGA 143
GP P PR RG A F+ G + RG + G
Sbjct: 690 TGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGE 749
Query: 144 RRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAP 203
G G PV + AGPA PN PP + TG A
Sbjct: 750 NGVVGPTG---------PVGA--------AGPAGPNGPPGPAGSRGDGGPPGMTGFPGAA 792
Query: 204 GRGA--RPSSCPGNVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASD 261
GR PS G G G A G+ D G P G E GA
Sbjct: 793 GRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQG-------PVGRTG-------EVGAVG 838
Query: 262 PPCPAAETGPA 272
PP A E GP+
Sbjct: 839 PPGFAGEKGPS 849
Score = 28.5 bits (62), Expect = 7.0
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 41 AAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPH 100
A ++G+ GP DG + K RG PG++ GA GP P
Sbjct: 924 AGRDGNPGNDGPPGRDG--------------QPGHKGERGYPGNIGPVGAAGAPGPHGPV 969
Query: 101 LPRAPTARRG 110
P RG
Sbjct: 970 GPAGKHGNRG 979
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 38.9 bits (89), Expect = 0.005
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 26 PKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSL 85
PKR R + GP A G R+ L +RP E V G+ + P +P RP SL
Sbjct: 104 PKRCQRSGVPYEGP-GAPGGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSL 162
Query: 86 DFASPGGAG-------GPQSPHLPRAPTARRG 110
F + G G G + P+ P R G
Sbjct: 163 GFPARAGQGQVQGAAPGRRLRGEPKTPPGRSG 194
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 38.5 bits (88), Expect = 0.007
Identities = 71/248 (28%), Positives = 88/248 (35%), Gaps = 37/248 (14%)
Query: 49 RRGPEALDGSRPAPETG-CVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLP-RAPT 106
R G G R +P G+WK P +G +FA G AGG + H P R
Sbjct: 144 RAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQG-----EFAGRG-AGGARVTHRPGRLRP 197
Query: 107 ARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSC--AGARRFG--------GSRGWDLGD 156
RG A T + R G L+V SC AG R G G+R G
Sbjct: 198 RGRGRGRARRTCPAR---RRGEEDLRVQD---SCPQAGCRAMGQRRVLKAEGARARARGG 251
Query: 157 LSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRA-PGRGA-------R 208
+ P +Q + +G S W+ SC R P RGA R
Sbjct: 252 VCFGPRPGMQ----KRSGGGSGGQRAGGWQPGPSVRESCIDMAGRERPSRGAGQRPQRVR 307
Query: 209 PSSCPGNVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAE 268
S P N+G G S L A R R VGTC P P S P ++
Sbjct: 308 GSVGPWNLGSLGKKNKQETNRRGSSLRAAWSGRGRFRKVGTCPTPGPPDAPSPPQLRVSK 367
Query: 269 TGP-ARVP 275
P +RVP
Sbjct: 368 LPPHSRVP 375
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 38.5 bits (88), Expect = 0.007
Identities = 71/248 (28%), Positives = 88/248 (35%), Gaps = 37/248 (14%)
Query: 49 RRGPEALDGSRPAPETG-CVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLP-RAPT 106
R G G R +P G+WK P +G +FA G AGG + H P R
Sbjct: 144 RAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQG-----EFAGRG-AGGARVTHRPGRLRP 197
Query: 107 ARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSC--AGARRFG--------GSRGWDLGD 156
RG A T + R G L+V SC AG R G G+R G
Sbjct: 198 RGRGRGRARRTCPAR---RRGEEDLRVQD---SCPQAGCRAMGQRRVLKAEGARARARGG 251
Query: 157 LSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRA-PGRGA-------R 208
+ P +Q + +G S W+ SC R P RGA R
Sbjct: 252 VCFGPRPGMQ----KRSGGGSGGQRAGGWQPGPSVRESCIDMAGRERPSRGAGQRPQRVR 307
Query: 209 PSSCPGNVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAE 268
S P N+G G S L A R R VGTC P P S P ++
Sbjct: 308 GSVGPWNLGSLGKKNKQETNRRGSSLRAAWSGRGRFRKVGTCPTPGPPDAPSPPQLRVSK 367
Query: 269 TGP-ARVP 275
P +RVP
Sbjct: 368 LPPHSRVP 375
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.1 bits (87), Expect = 0.009
Identities = 73/287 (25%), Positives = 84/287 (29%), Gaps = 67/287 (23%)
Query: 20 PDWRNGPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSR--------PAPETGCVLGQW 71
PD + GP GP G R GP G+R P P+ G
Sbjct: 549 PDGKTGPP----------GPA----GQDGRPGPPGPPGARGQAGVMGFPGPK-GAAGEPG 593
Query: 72 KTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHL 131
K E+ G PG++ A G G Q P P P RG + LP G
Sbjct: 594 KAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPG 653
Query: 132 QVHRGGR-------------SCAGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASP 178
+ + G G R F G RG GP P
Sbjct: 654 EAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ--------------------GPPGP 693
Query: 179 NLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFAL 238
P A G APG P G GE GAA L G + D G
Sbjct: 694 AGPRGANGAPGNDGAKGDAGAPGAPGSQGAP-GLQGMPGERGAAGLPGPKGDRGDAGPKG 752
Query: 239 VRRWP-----RRAVGTCTPPFP-----ESGASDPPCPAAETGPARVP 275
P R G PP P + G S P PA TG P
Sbjct: 753 ADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAP 799
Score = 35.0 bits (79), Expect = 0.075
Identities = 61/213 (28%), Positives = 69/213 (32%), Gaps = 35/213 (16%)
Query: 80 GRPGSLDFASPGG------AGGPQSPHLPRAPTARRGAAVADTTAFSPWLP-RVGGWHLQ 132
G PG F P G A GP P P P + G D A P P G Q
Sbjct: 194 GAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGD---DGEAGKPGRPGERGPPGPQ 250
Query: 133 VHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCS 192
RG AG G RG+ D + AGPA P P + +
Sbjct: 251 GARGLPGTAGLPGMKGHRGFSGLDGAKGD-----------AGPAGPKGEPGSPG---ENG 296
Query: 193 VSCYTGQCRAPGRGARPSS-----CPGNVGEGGAAFLSGVFLEASDLGF-----ALVRRW 242
G PG RP + GN G GAA G A GF A
Sbjct: 297 APGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAG 356
Query: 243 PRRAVGTCTPPFPESGASDPPCPAAETGPARVP 275
P+ G+ P G PP PA GPA P
Sbjct: 357 PQGPRGS-EGPQGVRGEPGPPGPAGAAGPAGNP 388
Score = 34.7 bits (78), Expect = 0.098
Identities = 60/239 (25%), Positives = 76/239 (31%), Gaps = 42/239 (17%)
Query: 41 AAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPH 100
A K G RGP G+R P T + G K RG F+ GA G P
Sbjct: 235 AGKPGRPGERGPPGPQGARGLPGTAGLPGM-----KGHRG------FSGLDGAKGDAGPA 283
Query: 101 LPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSA 160
P+ G A LP G R GA G+RG D ++
Sbjct: 284 GPKGEPGSPGENGAPGQMGPRGLP-----------GERGRPGAPGPAGARGNDGATGAAG 332
Query: 161 PVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQ-----------CRAPGRGARP 209
P GPA P P A + G P A P
Sbjct: 333 PPGP--------TGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGP 384
Query: 210 SSCPGNVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAE 268
+ PG G+ GA +G A GF R P G PP P+ + +P P ++
Sbjct: 385 AGNPGADGQPGAKGANGAPGIAGAPGFP-GARGPSGPQGPGGPPGPKGNSGEPGAPGSK 442
Score = 32.7 bits (73), Expect = 0.37
Identities = 56/232 (24%), Positives = 71/232 (30%), Gaps = 62/232 (26%)
Query: 45 GSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRA 104
G GP G+ AP G V K+ ++ G G P GA GP P PR
Sbjct: 1037 GETGPAGPPGAPGAPGAP--GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRG 1094
Query: 105 PTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVAS 164
G +G R G R F G +G P +
Sbjct: 1095 DKGETG-----------------------EQGDRGIKGHRGFSGLQG-----PPGPPGSP 1126
Query: 165 LQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGGAAFL 224
+ +GPA P PP G APG+ + PG +G G
Sbjct: 1127 GEQGPSGASGPAGPRGPP---------------GSAGAPGKDGL-NGLPGPIGPPGPRGR 1170
Query: 225 SGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASD------PPCPAAETG 270
+G +A +G P G PP P S D PP A G
Sbjct: 1171 TG---DAGPVG-------PPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDG 1212
Score = 32.0 bits (71), Expect = 0.64
Identities = 68/256 (26%), Positives = 78/256 (30%), Gaps = 74/256 (28%)
Query: 37 RGPTAAK--------EGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKP-RRGRPGSLDF 87
+G T AK +G G E G+R P G P P RG PGS F
Sbjct: 442 KGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP------GPTGLPGPPGERGGPGSRGF 495
Query: 88 ASPGGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFG 147
G GP+ P R G + A P G GA+
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP--------------GEAGLPGAKGLT 541
Query: 148 GSRGWDLGDLSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGA 207
GS G +P GP PP GQ PG
Sbjct: 542 GSPG--------SP------------GPDGKTGPPGP------------AGQDGRPG--- 566
Query: 208 RPSSCPGNVGEGGAAFLSGVFLEASDLGFALVR--RWPRRAVGTCTPPFPESGASDPPCP 265
P PG G+ G G A + G A R P AVG E+GA PP P
Sbjct: 567 -PPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD-GEAGAQGPPGP 624
Query: 266 A------AETGPARVP 275
A E GPA P
Sbjct: 625 AGPAGERGEQGPAGSP 640
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 38.1 bits (87), Expect = 0.009
Identities = 55/179 (30%), Positives = 63/179 (35%), Gaps = 34/179 (18%)
Query: 45 GSAKRRGPEALDGSRPAP-ETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQS-PHLP 102
G R+GP+ G P G V+G EK RG PG+ P G GP+ P LP
Sbjct: 311 GLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGT---PGPRGEPGPKGFPGLP 367
Query: 103 RAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPV 162
P P LP G AGA F G RG + GD P
Sbjct: 368 GQPG-------------PPGLPVPGQ------------AGAPGFPGERG-EKGD-RGFPG 400
Query: 163 ASLQWACFRWAGPASPNLP-PAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGG 220
SL R P P P P +T V C G G P PG +GE G
Sbjct: 401 TSLPGPSGRDGLPGPPGSPGPPGQPGYTNGIVECQPGPPGDQGPPGIPGQ-PGFIGEIG 458
Score = 30.8 bits (68), Expect = 1.4
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 43 KEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSP--H 100
+ GS R G L G + +P + + G+ RG PG + F G GP P +
Sbjct: 557 RAGSPGRDGHPGLPGPKGSPGSVGLKGE--------RGPPGGVGFPGSRGDTGPPGPPGY 608
Query: 101 LPRAPTARRGAAVADTTAFSPWLP 124
P P +G A SP LP
Sbjct: 609 GPAGPIGDKGQAGFPGGPGSPGLP 632
Score = 28.1 bits (61), Expect = 9.2
Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 26 PKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSL 85
P K + +F+GP K G GP + G E G + EK ++G PG
Sbjct: 214 PGEKGQMGLSFQGPKGDK-GDQGVSGPPGVPGQAQVQEKGDFATKG---EKGQKGEPGFQ 269
Query: 86 DFASPGGAGGPQSPHLPRAPTARRG 110
G G P P PR + G
Sbjct: 270 GMPGVGEKGEPGKPG-PRGKPGKDG 293
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 38.1 bits (87), Expect = 0.009
Identities = 72/268 (26%), Positives = 92/268 (34%), Gaps = 48/268 (17%)
Query: 25 GPKRKDRQITTFRGPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGS 84
GP R +TT R A G A GP SR + W + RR
Sbjct: 68 GPTRPSGSLTTRRPRDA---GEAAVSGP-----SRQRRTSRARTALWG--RRSRRAAGPG 117
Query: 85 LDFA----SPGGA---GGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGG 137
LD A +P GA GGP R P + A+ A S PR G GG
Sbjct: 118 LDCAGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRA-SHSGPRAG-----TPGGG 171
Query: 138 RSC-AGARRFGGSRGWDLGDLSSAPVASLQWACFR-------WAGPASPNLPPAAWRTWT 189
RS AGARR LS P+ + + R W G +P P A W
Sbjct: 172 RSSRAGARR--------KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHG 223
Query: 190 QCSVSCYTGQCRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFALVRRWPR---RA 246
+ + RA RG+ +CPG+ + V A G +R+ +
Sbjct: 224 GAAGA------RAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHS 277
Query: 247 VGTCTPPFPESGASDPPCPAAETGPARV 274
G T P P P P PAR+
Sbjct: 278 TGARTLPTPSRARPGKPAPRGSAPPARL 305
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 38.1 bits (87), Expect = 0.009
Identities = 64/222 (28%), Positives = 75/222 (33%), Gaps = 60/222 (27%)
Query: 74 PEKPRRGRPGSLDFASPGG-----AGGPQ--SPHLPRAPTARRGAAVADTTAFSPWLPRV 126
P P G PG+ P G GGPQ P PR P G A P
Sbjct: 75 PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSA 134
Query: 127 GGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPASPNLPPAAWR 186
G SCA ++A A + A AGPA P P A
Sbjct: 135 G-----------SCAPV------------PAAAAVAAGPEPAP---AGPAKPAGPAA--- 165
Query: 187 TWTQCSVSCYTGQCRAPGRGARPSSCPGN-VGEGGAAFLSGVFL-----EASDLGFALVR 240
++ G PG G P PG G G A L+G A+ +LV
Sbjct: 166 ------LAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVN 219
Query: 241 RWPRR--------AVGTC--TPPFPESGASDPPCPAAETGPA 272
P A GT TPPF GA+ PP PAA + PA
Sbjct: 220 NGPAALLPLPKPAAPGTVIQTPPFV--GAAAPPAPAAPSPPA 259
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 37.7 bits (86), Expect = 0.012
Identities = 45/161 (27%), Positives = 60/161 (37%), Gaps = 20/161 (12%)
Query: 39 PTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQS 98
P G+A+ R E L P +L ++ P PR R GS + A P P +
Sbjct: 47 PAPPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPR--RRGSPERARPPPPPPPPA 104
Query: 99 PHLPRAPTAR---------RGAAVADTTAFSPWLPRVGGWHLQVH-RGGRSCAGARRFGG 148
P PR P A RG + S +L + G VH RG AGAR
Sbjct: 105 P--PRPPPAAPSPPAAPGPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSN 162
Query: 149 S------RGWDLGDLSSAPVASLQWACFRWAGPASPNLPPA 183
R L+ +P S QW +G S + PP+
Sbjct: 163 GHSAPEPRAGPANRLAGSPPGSGQWKPKVESGDPSLHPPPS 203
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 37.7 bits (86), Expect = 0.012
Identities = 45/161 (27%), Positives = 60/161 (37%), Gaps = 20/161 (12%)
Query: 39 PTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQS 98
P G+A+ R E L P +L ++ P PR R GS + A P P +
Sbjct: 47 PAPPAPGAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPR--RRGSPERARPPPPPPPPA 104
Query: 99 PHLPRAPTAR---------RGAAVADTTAFSPWLPRVGGWHLQVH-RGGRSCAGARRFGG 148
P PR P A RG + S +L + G VH RG AGAR
Sbjct: 105 P--PRPPPAAPSPPAAPGPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSN 162
Query: 149 S------RGWDLGDLSSAPVASLQWACFRWAGPASPNLPPA 183
R L+ +P S QW +G S + PP+
Sbjct: 163 GHSAPEPRAGPANRLAGSPPGSGQWKPKVESGDPSLHPPPS 203
>gi|239751535 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 37.4 bits (85), Expect = 0.015
Identities = 62/229 (27%), Positives = 78/229 (34%), Gaps = 64/229 (27%)
Query: 96 PQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGG----RSCAGARRFGGSRG 151
P + PR P A G A GG ++ RGG R+ AR FG G
Sbjct: 29 PPAARSPRGPRAGGGGGDAGG----------GGAPVRRARGGGCWARAYQDARCFGRGEG 78
Query: 152 WDLGDLS---SAPVASLQWACFRWAG----PASPNLPPAAWRTWTQCSVS---------- 194
DL S +AP A + + G PA P PP R +T S S
Sbjct: 79 GDLQVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSA 138
Query: 195 ----------------CYTGQCRAPGRGARPSSCPGNV------------GEGGAAFLSG 226
C + R PG GA P + GN G +AF++G
Sbjct: 139 SALPAPRLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAG 198
Query: 227 VFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETGPARVP 275
+ L A + R PR A G GA + P P GP R P
Sbjct: 199 ---RDAALACAQLPRRPRGA-GARRGMRRRLGAGERPAPRPR-GPPRAP 242
>gi|239746046 PREDICTED: hypothetical protein XP_002343643 [Homo
sapiens]
Length = 255
Score = 37.4 bits (85), Expect = 0.015
Identities = 62/229 (27%), Positives = 78/229 (34%), Gaps = 64/229 (27%)
Query: 96 PQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGG----RSCAGARRFGGSRG 151
P + PR P A G A GG ++ RGG R+ AR FG G
Sbjct: 29 PPAARSPRGPRAGGGGGDAGG----------GGAPVRRARGGGCWARAYQDARCFGRGEG 78
Query: 152 WDLGDLS---SAPVASLQWACFRWAG----PASPNLPPAAWRTWTQCSVS---------- 194
DL S +AP A + + G PA P PP R +T S S
Sbjct: 79 GDLQVSSGPGAAPPAEFRASARSAQGSRDVPAGPGFPPRLPRPFTSASFSNQTRLRRRSA 138
Query: 195 ----------------CYTGQCRAPGRGARPSSCPGNV------------GEGGAAFLSG 226
C + R PG GA P + GN G +AF++G
Sbjct: 139 SALPAPRLCPQRASPGCSSPGVRGPGGGASPRARGGNAAAALAARQAAGGGRSRSAFVAG 198
Query: 227 VFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETGPARVP 275
+ L A + R PR A G GA + P P GP R P
Sbjct: 199 ---RDAALACAQLPRRPRGA-GARRGMRRRLGAGERPAPRPR-GPPRAP 242
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.0 bits (84), Expect = 0.020
Identities = 52/192 (27%), Positives = 66/192 (34%), Gaps = 32/192 (16%)
Query: 43 KEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLP 102
+EGS GP DG+ K RG G++ +PG G P SP P
Sbjct: 1036 REGSPGADGPPGRDGAAGV--------------KGDRGETGAV--GAPGAPGPPGSPG-P 1078
Query: 103 RAPTARRGAAVADTTAFSPWLPR--VGGWHLQVHRGGRSCAGARRFGGSRG-------WD 153
PT ++G + A P P G +Q +G R G G RG
Sbjct: 1079 AGPTGKQGDR-GEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1137
Query: 154 LGDLSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGAR----- 208
L L P S AGP+ P PP + + G PG R
Sbjct: 1138 LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1197
Query: 209 PSSCPGNVGEGG 220
P+ PGN G G
Sbjct: 1198 PAGPPGNPGPPG 1209
Score = 35.0 bits (79), Expect = 0.075
Identities = 69/266 (25%), Positives = 81/266 (30%), Gaps = 48/266 (18%)
Query: 38 GPTAAKEGSAKRRGPEALDGSRPAPET-------GCVLGQWKTPEKPRRGRPGSLDFASP 90
GP+ A G R GP G+R P G K EK G PG
Sbjct: 576 GPSGAP-GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGK 634
Query: 91 GGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLP----------RVGGWHLQVHRGGRSC 140
G G P P P RG A + LP + G + G
Sbjct: 635 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL 694
Query: 141 AGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPAS-PNLPPAAWRTWTQCSVSCYTGQ 199
G R G RG+ G+ S LQ GP P P +G
Sbjct: 695 VGPR---GERGFP-GERGSPGAQGLQ-------GPRGLPGTPGTD-------GPKGASGP 736
Query: 200 CRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFALVRRWP-----RRAVGTCTPPF 254
PG P G GE GAA ++G + D+G P R G PP
Sbjct: 737 AGPPG-AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG 795
Query: 255 P-----ESGASDPPCPAAETGPARVP 275
P E G PP PA G P
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAP 821
Score = 34.3 bits (77), Expect = 0.13
Identities = 69/236 (29%), Positives = 87/236 (36%), Gaps = 42/236 (17%)
Query: 41 AAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPH 100
A K G A RGP G+R P T + G K RG PG LD A G AG P
Sbjct: 257 AGKPGKAGERGPPGPQGARGFPGTPGLPG-----VKGHRGYPG-LDGAK-GEAGAPGVKG 309
Query: 101 LPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSA 160
+P + + P PR L RG AGA G+RG D +
Sbjct: 310 ESGSP--------GENGSPGPMGPR----GLPGERGRTGPAGA---AGARGNDGQPGPAG 354
Query: 161 PVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGG 220
P + A GP P P A + + G A G P + PG+ G G
Sbjct: 355 PPGPVGPA----GGPGFPGAPGAK----GEAGPTGARGPEGAQGPRGEPGT-PGSPGPAG 405
Query: 221 AA------FLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETG 270
A+ + G A G A +P G PP P+ GA+ P P +TG
Sbjct: 406 ASGNPGTDGIPGAKGSAGAPGIAGAPGFP----GPRGPPGPQ-GATGPLGPKGQTG 456
Score = 30.8 bits (68), Expect = 1.4
Identities = 58/237 (24%), Positives = 72/237 (30%), Gaps = 48/237 (20%)
Query: 41 AAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPH 100
A G RG G R +P + G RG PG+ P GA GP P
Sbjct: 689 AGAPGLVGPRGERGFPGERGSPGAQGLQGP--------RGLPGTPGTDGPKGASGPAGPP 740
Query: 101 LPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSA 160
+ P +G G + +G R G + G+ G D G +
Sbjct: 741 GAQGPPGLQGMP-----------GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 789
Query: 161 PVASLQWACFRWAGPASPN------LPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPG 214
P+ GPA N PP + G+ PG P+ G
Sbjct: 790 PIGP--------PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPG----PAGFAG 837
Query: 215 NVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETGP 271
G G G EA G A G P P SGA P P TGP
Sbjct: 838 PPGADGQPGAKGEQGEAGQKGDA----------GAPGPQGP-SGAPGPQGPTGVTGP 883
Score = 30.8 bits (68), Expect = 1.4
Identities = 31/92 (33%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 37 RGPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGP 96
RG T G A GP DG + G Q + +K G PG P GA GP
Sbjct: 824 RGETGPP-GPAGFAGPPGADG-----QPGAKGEQGEAGQKGDAGAPGP---QGPSGAPGP 874
Query: 97 QSPHLPRAPTARRGA-AVADTTAFSPWLPRVG 127
Q P P RGA T F RVG
Sbjct: 875 QGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 906
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 76 KPRRGRPGSL-DFASPGGAGGPQSPHLPRAPTARRG 110
K ++G PG + D P G GPQ P + P RG
Sbjct: 103 KGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRG 138
Score = 28.5 bits (62), Expect = 7.0
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 25 GPKRKDRQ--ITTFRGPTAAK-----EGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKP 77
GPK + + I F+G K G GP +G R A +G P +
Sbjct: 450 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE- 508
Query: 78 RRGRPGSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGG 128
RG PG+ F G GP+ R P+ G A+ P P + G
Sbjct: 509 -RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPG 558
Score = 28.5 bits (62), Expect = 7.0
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 51 GPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRAPTARRG 110
GP DG+ P +G P PR GR G A P G GP P P P
Sbjct: 1170 GPSGKDGANGIPGP---IG----PPGPR-GRSGETGPAGPPGNPGPPGPPGPPGPG---- 1217
Query: 111 AAVADTTAFSPWLPRVGGWH-LQVHRGGRSCAGARR 145
D +AF+ PR G LQ R ++ G R+
Sbjct: 1218 ---IDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQ 1250
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.0 bits (84), Expect = 0.020
Identities = 52/192 (27%), Positives = 66/192 (34%), Gaps = 32/192 (16%)
Query: 43 KEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLP 102
+EGS GP DG+ K RG G++ +PG G P SP P
Sbjct: 967 REGSPGADGPPGRDGAAGV--------------KGDRGETGAV--GAPGAPGPPGSPG-P 1009
Query: 103 RAPTARRGAAVADTTAFSPWLPR--VGGWHLQVHRGGRSCAGARRFGGSRG-------WD 153
PT ++G + A P P G +Q +G R G G RG
Sbjct: 1010 AGPTGKQGDR-GEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTG 1068
Query: 154 LGDLSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGAR----- 208
L L P S AGP+ P PP + + G PG R
Sbjct: 1069 LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1128
Query: 209 PSSCPGNVGEGG 220
P+ PGN G G
Sbjct: 1129 PAGPPGNPGPPG 1140
Score = 35.0 bits (79), Expect = 0.075
Identities = 69/266 (25%), Positives = 81/266 (30%), Gaps = 48/266 (18%)
Query: 38 GPTAAKEGSAKRRGPEALDGSRPAPET-------GCVLGQWKTPEKPRRGRPGSLDFASP 90
GP+ A G R GP G+R P G K EK G PG
Sbjct: 507 GPSGAP-GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGK 565
Query: 91 GGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLP----------RVGGWHLQVHRGGRSC 140
G G P P P RG A + LP + G + G
Sbjct: 566 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL 625
Query: 141 AGARRFGGSRGWDLGDLSSAPVASLQWACFRWAGPAS-PNLPPAAWRTWTQCSVSCYTGQ 199
G R G RG+ G+ S LQ GP P P +G
Sbjct: 626 VGPR---GERGFP-GERGSPGAQGLQ-------GPRGLPGTPGTD-------GPKGASGP 667
Query: 200 CRAPGRGARPSSCPGNVGEGGAAFLSGVFLEASDLGFALVRRWP-----RRAVGTCTPPF 254
PG P G GE GAA ++G + D+G P R G PP
Sbjct: 668 AGPPG-AQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPG 726
Query: 255 P-----ESGASDPPCPAAETGPARVP 275
P E G PP PA G P
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAP 752
Score = 34.3 bits (77), Expect = 0.13
Identities = 69/236 (29%), Positives = 87/236 (36%), Gaps = 42/236 (17%)
Query: 41 AAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPH 100
A K G A RGP G+R P T + G K RG PG LD A G AG P
Sbjct: 188 AGKPGKAGERGPPGPQGARGFPGTPGLPG-----VKGHRGYPG-LDGAK-GEAGAPGVKG 240
Query: 101 LPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSA 160
+P + + P PR L RG AGA G+RG D +
Sbjct: 241 ESGSP--------GENGSPGPMGPR----GLPGERGRTGPAGA---AGARGNDGQPGPAG 285
Query: 161 PVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVGEGG 220
P + A GP P P A + + G A G P + PG+ G G
Sbjct: 286 PPGPVGPA----GGPGFPGAPGAK----GEAGPTGARGPEGAQGPRGEPGT-PGSPGPAG 336
Query: 221 AA------FLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETG 270
A+ + G A G A +P G PP P+ GA+ P P +TG
Sbjct: 337 ASGNPGTDGIPGAKGSAGAPGIAGAPGFP----GPRGPPGPQ-GATGPLGPKGQTG 387
Score = 30.8 bits (68), Expect = 1.4
Identities = 58/237 (24%), Positives = 72/237 (30%), Gaps = 48/237 (20%)
Query: 41 AAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPH 100
A G RG G R +P + G RG PG+ P GA GP P
Sbjct: 620 AGAPGLVGPRGERGFPGERGSPGAQGLQGP--------RGLPGTPGTDGPKGASGPAGPP 671
Query: 101 LPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSA 160
+ P +G G + +G R G + G+ G D G +
Sbjct: 672 GAQGPPGLQGMP-----------GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG 720
Query: 161 PVASLQWACFRWAGPASPN------LPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPG 214
P+ GPA N PP + G+ PG P+ G
Sbjct: 721 PIGP--------PGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPG----PAGFAG 768
Query: 215 NVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETGP 271
G G G EA G A G P P SGA P P TGP
Sbjct: 769 PPGADGQPGAKGEQGEAGQKGDA----------GAPGPQGP-SGAPGPQGPTGVTGP 814
Score = 30.8 bits (68), Expect = 1.4
Identities = 31/92 (33%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 37 RGPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGP 96
RG T G A GP DG + G Q + +K G PG P GA GP
Sbjct: 755 RGETGPP-GPAGFAGPPGADG-----QPGAKGEQGEAGQKGDAGAPGP---QGPSGAPGP 805
Query: 97 QSPHLPRAPTARRGA-AVADTTAFSPWLPRVG 127
Q P P RGA T F RVG
Sbjct: 806 QGPTGVTGPKGARGAQGPPGATGFPGAAGRVG 837
Score = 28.9 bits (63), Expect = 5.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 76 KPRRGRPGSL-DFASPGGAGGPQSPHLPRAPTARRG 110
K ++G PG + D P G GPQ P + P RG
Sbjct: 34 KGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRG 69
Score = 28.5 bits (62), Expect = 7.0
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 25 GPKRKDRQ--ITTFRGPTAAK-----EGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKP 77
GPK + + I F+G K G GP +G R A +G P +
Sbjct: 381 GPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE- 439
Query: 78 RRGRPGSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGG 128
RG PG+ F G GP+ R P+ G A+ P P + G
Sbjct: 440 -RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPG 489
Score = 28.5 bits (62), Expect = 7.0
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 51 GPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRAPTARRG 110
GP DG+ P +G P PR GR G A P G GP P P P
Sbjct: 1101 GPSGKDGANGIPGP---IG----PPGPR-GRSGETGPAGPPGNPGPPGPPGPPGPG---- 1148
Query: 111 AAVADTTAFSPWLPRVGGWH-LQVHRGGRSCAGARR 145
D +AF+ PR G LQ R ++ G R+
Sbjct: 1149 ---IDMSAFAGLGPREKGPDPLQYMRADQAAGGLRQ 1181
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 36.6 bits (83), Expect = 0.026
Identities = 55/182 (30%), Positives = 72/182 (39%), Gaps = 17/182 (9%)
Query: 48 KRRGPEALDGSR-PAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSP-HLPRAP 105
++ G + GSR P+P G W +P+ R G G A G G SP P +P
Sbjct: 287 RKTGSQRSSGSRSPSPSGG---SGWGSPQ--RNGGSGQRSGAHGGRPGSAHSPPDKPSSP 341
Query: 106 TAR---RGAAVADTT-AFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAP 161
+ R + AA A T A P RGGR+ GA R R SSA
Sbjct: 342 SPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSAS 401
Query: 162 VASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCR-APGRGARPSSCPGNVGEGG 220
+ R PA P + R+ ++ S +G R APG G P S G+ G G
Sbjct: 402 APRRRGR--RRPRPAPPR---GSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGK 456
Query: 221 AA 222
A
Sbjct: 457 RA 458
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 36.2 bits (82), Expect = 0.034
Identities = 61/247 (24%), Positives = 80/247 (32%), Gaps = 54/247 (21%)
Query: 44 EGSAKRRGPEALDG----SRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSP 99
+G+A + GP G P + G + + EK R G PG G G P
Sbjct: 1346 DGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGG------PGKSGSMGP 1399
Query: 100 HLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSS 159
P P RG A + SP LP V G + +RF + D
Sbjct: 1400 VGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDE----IKRFIRQEIIKMFDERM 1455
Query: 160 APVAS-LQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSS--CPGNV 216
A S +Q+ A P P P G+ APGR P S PG +
Sbjct: 1456 AYYTSRMQFPMEMAAAPGRPGPP----------------GKDGAPGRPGAPGSPGLPGQI 1499
Query: 217 GEGGAAFLSGV------FLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETG 270
G G L GV E D+G + E+G PP P G
Sbjct: 1500 GREGRQGLPGVRGLPGTKGEKGDIGIGIA---------------GENGLPGPPGPQGPPG 1544
Query: 271 PARVPVT 277
++ T
Sbjct: 1545 YGKMGAT 1551
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 35.8 bits (81), Expect = 0.044
Identities = 33/84 (39%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 36 FRGPTAAK---EGSAKRRGPEALDGSR-PAPETG-CVLGQWKTPEKPRRGRPGSLDFASP 90
F+G K GS GP L G+ PA + G V+G P P G PG F P
Sbjct: 1035 FKGEKGEKGDINGSFLMSGPPGLPGNPGPAGQKGETVVGPQGPPGAP--GLPGPPGFGRP 1092
Query: 91 GGAGGPQSPHLPRAPTARRGAAVA 114
G GP P P P A GAAVA
Sbjct: 1093 GDP-GPPGPPGPPGPPAILGAAVA 1115
>gi|239752864 PREDICTED: hypothetical protein [Homo sapiens]
Length = 386
Score = 35.8 bits (81), Expect = 0.044
Identities = 43/141 (30%), Positives = 53/141 (37%), Gaps = 20/141 (14%)
Query: 22 WRNGPKRKDRQITTFR--GPTAAKEGSAK--RRGPEALDGSRPA--------PETGCVLG 69
WR GP R + + R G A+EG + R PE L RP+ P G V
Sbjct: 155 WRRGPARAELAGSGRRWWGVGEAREGRSAPPRDWPEPLGELRPSAPRGGKGGPRAGVVAA 214
Query: 70 QWKTPEKPRRGRP-GSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGG 128
W P GRP L+ A GPQ + + +T A P LP
Sbjct: 215 SWARDSGPGVGRPVPDLEVAV---INGPQPLAICLHVQSPNDQETLETLARLPELPAA-- 269
Query: 129 WHLQVHRGGRSCAGARRFGGS 149
L HRGG C RR G+
Sbjct: 270 -ELTGHRGG-GCGPGRRVRGN 288
>gi|239747416 PREDICTED: hypothetical protein XP_002346693 [Homo
sapiens]
Length = 386
Score = 35.8 bits (81), Expect = 0.044
Identities = 43/141 (30%), Positives = 53/141 (37%), Gaps = 20/141 (14%)
Query: 22 WRNGPKRKDRQITTFR--GPTAAKEGSAK--RRGPEALDGSRPA--------PETGCVLG 69
WR GP R + + R G A+EG + R PE L RP+ P G V
Sbjct: 155 WRRGPARAELAGSGRRWWGVGEAREGRSAPPRDWPEPLGELRPSAPRGGKGGPRAGVVAA 214
Query: 70 QWKTPEKPRRGRP-GSLDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGG 128
W P GRP L+ A GPQ + + +T A P LP
Sbjct: 215 SWARDSGPGVGRPVPDLEVAV---INGPQPLAICLHVQSPNDQETLETLARLPELPAA-- 269
Query: 129 WHLQVHRGGRSCAGARRFGGS 149
L HRGG C RR G+
Sbjct: 270 -ELTGHRGG-GCGPGRRVRGN 288
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 35.8 bits (81), Expect = 0.044
Identities = 69/238 (28%), Positives = 80/238 (33%), Gaps = 28/238 (11%)
Query: 38 GPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQ 97
GPT G +GP L G PA G V G+ +K G PG G GP
Sbjct: 971 GPT----GRDGVQGPVGLPG--PAGPPG-VAGE--DGDKGEVGDPGQKGTKGNKGEHGPP 1021
Query: 98 SPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDL 157
P P P + GAA AD G Q H G + G R F G G +G L
Sbjct: 1022 GPPGPIGPVGQPGAAGAD--------GEPGARGPQGHFGAKGDEGTRGFNGPPG-PIG-L 1071
Query: 158 SSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVG 217
P S + GP P PP + G PG G PG G
Sbjct: 1072 QGLPGPSGEKGETGDVGPMGPPGPPG---PRGPAGPNGADGPQGPPG-GVGNLGPPGEKG 1127
Query: 218 EGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETGPARVP 275
E G + G+ E G R R G P E G P P + GP P
Sbjct: 1128 EPGESGSPGIQGEPGVKG----PRGERGEKGESGQP-GEPGPPGPKGPTGDDGPKGNP 1180
Score = 31.6 bits (70), Expect = 0.83
Identities = 44/136 (32%), Positives = 51/136 (37%), Gaps = 29/136 (21%)
Query: 37 RGPT-AAKEGSAKR---------RGPEALDG--SRPAPETGCVLGQWKTPEKPRRGRPGS 84
+GP AA+E A+ RGP G RP P LGQ +P +G G
Sbjct: 377 KGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGP-----LGQPGSPGL--KGESGD 429
Query: 85 LDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWH-------LQVHRGG 137
L P G GPQ P RRG A AD P P V G L +G
Sbjct: 430 L---GPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGH 486
Query: 138 RSCAGARRFGGSRGWD 153
R GA+ G G D
Sbjct: 487 RGDTGAQGLPGPPGED 502
Score = 30.4 bits (67), Expect = 1.9
Identities = 63/237 (26%), Positives = 71/237 (29%), Gaps = 62/237 (26%)
Query: 44 EGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKP-RRGRPGSLDFAS-PGGAG------- 94
EG R GP G LG P P R+G GSL F PG +G
Sbjct: 685 EGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 744
Query: 95 -GPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWD 153
G P R PT RG RG R G G++G
Sbjct: 745 SGKSGPRGERGPTGPRG-----------------------QRGPRGATGK---SGAKGTS 778
Query: 154 LGDLSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP 213
GD P GP PN P G PG+ P P
Sbjct: 779 GGDGPHGPPGER-----GLPGPQGPNGFPGP------------KGPPGPPGKDGLPGH-P 820
Query: 214 GNVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETG 270
G GE G +G +G P+ A G T P E G PP P E G
Sbjct: 821 GQRGEVGFQGKTGPPGPPGVVG-------PQGAAGE-TGPMGERGHPGPPGPPGEQG 869
Score = 29.6 bits (65), Expect = 3.2
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 37 RGPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQ-WKTPEKPRRGRPGSLDFASPGGAGG 95
+GPT +G GP G P G GQ ++ G PG P G G
Sbjct: 1168 KGPTG-DDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1226
Query: 96 PQSPHLPRAPTARRGA 111
P P R P G+
Sbjct: 1227 PPGPLGKRGPAGSPGS 1242
Score = 28.1 bits (61), Expect = 9.2
Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 33/138 (23%)
Query: 45 GSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRA 104
G A + GP DG R P + +GQ +GRPG+ A P G GP P
Sbjct: 1271 GPAGKPGP---DGLRGLPGS---VGQ--------QGRPGATGQAGPPGPVGP-----PGL 1311
Query: 105 PTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVAS 164
P R A + +G Q +G R G + G +G ++G P AS
Sbjct: 1312 PGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG-EMG----IPGAS 1366
Query: 165 LQWACFRWAGPASPNLPP 182
GP P PP
Sbjct: 1367 ---------GPIGPGGPP 1375
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 35.8 bits (81), Expect = 0.044
Identities = 69/238 (28%), Positives = 80/238 (33%), Gaps = 28/238 (11%)
Query: 38 GPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQ 97
GPT G +GP L G PA G V G+ +K G PG G GP
Sbjct: 950 GPT----GRDGVQGPVGLPG--PAGPPG-VAGE--DGDKGEVGDPGQKGTKGNKGEHGPP 1000
Query: 98 SPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDL 157
P P P + GAA AD G Q H G + G R F G G +G L
Sbjct: 1001 GPPGPIGPVGQPGAAGAD--------GEPGARGPQGHFGAKGDEGTRGFNGPPG-PIG-L 1050
Query: 158 SSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVG 217
P S + GP P PP + G PG G PG G
Sbjct: 1051 QGLPGPSGEKGETGDVGPMGPPGPPG---PRGPAGPNGADGPQGPPG-GVGNLGPPGEKG 1106
Query: 218 EGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETGPARVP 275
E G + G+ E G R R G P E G P P + GP P
Sbjct: 1107 EPGESGSPGIQGEPGVKG----PRGERGEKGESGQP-GEPGPPGPKGPTGDDGPKGNP 1159
Score = 31.6 bits (70), Expect = 0.83
Identities = 44/136 (32%), Positives = 51/136 (37%), Gaps = 29/136 (21%)
Query: 37 RGPT-AAKEGSAKR---------RGPEALDG--SRPAPETGCVLGQWKTPEKPRRGRPGS 84
+GP AA+E A+ RGP G RP P LGQ +P +G G
Sbjct: 356 KGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGP-----LGQPGSPGL--KGESGD 408
Query: 85 LDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWH-------LQVHRGG 137
L P G GPQ P RRG A AD P P V G L +G
Sbjct: 409 L---GPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGH 465
Query: 138 RSCAGARRFGGSRGWD 153
R GA+ G G D
Sbjct: 466 RGDTGAQGLPGPPGED 481
Score = 30.4 bits (67), Expect = 1.9
Identities = 63/237 (26%), Positives = 71/237 (29%), Gaps = 62/237 (26%)
Query: 44 EGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKP-RRGRPGSLDFAS-PGGAG------- 94
EG R GP G LG P P R+G GSL F PG +G
Sbjct: 664 EGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 723
Query: 95 -GPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWD 153
G P R PT RG RG R G G++G
Sbjct: 724 SGKSGPRGERGPTGPRG-----------------------QRGPRGATGK---SGAKGTS 757
Query: 154 LGDLSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP 213
GD P GP PN P G PG+ P P
Sbjct: 758 GGDGPHGPPGER-----GLPGPQGPNGFPGP------------KGPPGPPGKDGLPGH-P 799
Query: 214 GNVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETG 270
G GE G +G +G P+ A G T P E G PP P E G
Sbjct: 800 GQRGEVGFQGKTGPPGPPGVVG-------PQGAAGE-TGPMGERGHPGPPGPPGEQG 848
Score = 29.6 bits (65), Expect = 3.2
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 37 RGPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQ-WKTPEKPRRGRPGSLDFASPGGAGG 95
+GPT +G GP G P G GQ ++ G PG P G G
Sbjct: 1147 KGPTG-DDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1205
Query: 96 PQSPHLPRAPTARRGA 111
P P R P G+
Sbjct: 1206 PPGPLGKRGPAGSPGS 1221
Score = 28.1 bits (61), Expect = 9.2
Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 33/138 (23%)
Query: 45 GSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRA 104
G A + GP DG R P + +GQ +GRPG+ A P G GP P
Sbjct: 1250 GPAGKPGP---DGLRGLPGS---VGQ--------QGRPGATGQAGPPGPVGP-----PGL 1290
Query: 105 PTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVAS 164
P R A + +G Q +G R G + G +G ++G P AS
Sbjct: 1291 PGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG-EMG----IPGAS 1345
Query: 165 LQWACFRWAGPASPNLPP 182
GP P PP
Sbjct: 1346 ---------GPIGPGGPP 1354
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 35.8 bits (81), Expect = 0.044
Identities = 69/238 (28%), Positives = 80/238 (33%), Gaps = 28/238 (11%)
Query: 38 GPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQ 97
GPT G +GP L G PA G V G+ +K G PG G GP
Sbjct: 1057 GPT----GRDGVQGPVGLPG--PAGPPG-VAGE--DGDKGEVGDPGQKGTKGNKGEHGPP 1107
Query: 98 SPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDL 157
P P P + GAA AD G Q H G + G R F G G +G L
Sbjct: 1108 GPPGPIGPVGQPGAAGAD--------GEPGARGPQGHFGAKGDEGTRGFNGPPG-PIG-L 1157
Query: 158 SSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCPGNVG 217
P S + GP P PP + G PG G PG G
Sbjct: 1158 QGLPGPSGEKGETGDVGPMGPPGPPG---PRGPAGPNGADGPQGPPG-GVGNLGPPGEKG 1213
Query: 218 EGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETGPARVP 275
E G + G+ E G R R G P E G P P + GP P
Sbjct: 1214 EPGESGSPGIQGEPGVKG----PRGERGEKGESGQP-GEPGPPGPKGPTGDDGPKGNP 1266
Score = 31.6 bits (70), Expect = 0.83
Identities = 44/136 (32%), Positives = 51/136 (37%), Gaps = 29/136 (21%)
Query: 37 RGPT-AAKEGSAKR---------RGPEALDG--SRPAPETGCVLGQWKTPEKPRRGRPGS 84
+GP AA+E A+ RGP G RP P LGQ +P +G G
Sbjct: 463 KGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGP-----LGQPGSPGL--KGESGD 515
Query: 85 LDFASPGGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWH-------LQVHRGG 137
L P G GPQ P RRG A AD P P V G L +G
Sbjct: 516 L---GPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGH 572
Query: 138 RSCAGARRFGGSRGWD 153
R GA+ G G D
Sbjct: 573 RGDTGAQGLPGPPGED 588
Score = 30.4 bits (67), Expect = 1.9
Identities = 63/237 (26%), Positives = 71/237 (29%), Gaps = 62/237 (26%)
Query: 44 EGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKP-RRGRPGSLDFAS-PGGAG------- 94
EG R GP G LG P P R+G GSL F PG +G
Sbjct: 771 EGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGL 830
Query: 95 -GPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWD 153
G P R PT RG RG R G G++G
Sbjct: 831 SGKSGPRGERGPTGPRG-----------------------QRGPRGATGK---SGAKGTS 864
Query: 154 LGDLSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP 213
GD P GP PN P G PG+ P P
Sbjct: 865 GGDGPHGPPGER-----GLPGPQGPNGFPGP------------KGPPGPPGKDGLPGH-P 906
Query: 214 GNVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFPESGASDPPCPAAETG 270
G GE G +G +G P+ A G T P E G PP P E G
Sbjct: 907 GQRGEVGFQGKTGPPGPPGVVG-------PQGAAGE-TGPMGERGHPGPPGPPGEQG 955
Score = 29.6 bits (65), Expect = 3.2
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 37 RGPTAAKEGSAKRRGPEALDGSRPAPETGCVLGQ-WKTPEKPRRGRPGSLDFASPGGAGG 95
+GPT +G GP G P G GQ ++ G PG P G G
Sbjct: 1254 KGPTG-DDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENG 1312
Query: 96 PQSPHLPRAPTARRGA 111
P P R P G+
Sbjct: 1313 PPGPLGKRGPAGSPGS 1328
Score = 28.1 bits (61), Expect = 9.2
Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 33/138 (23%)
Query: 45 GSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPRRGRPGSLDFASPGGAGGPQSPHLPRA 104
G A + GP DG R P + +GQ +GRPG+ A P G GP P
Sbjct: 1357 GPAGKPGP---DGLRGLPGS---VGQ--------QGRPGATGQAGPPGPVGP-----PGL 1397
Query: 105 PTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSRGWDLGDLSSAPVAS 164
P R A + +G Q +G R G + G +G ++G P AS
Sbjct: 1398 PGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG-EMG----IPGAS 1452
Query: 165 LQWACFRWAGPASPNLPP 182
GP P PP
Sbjct: 1453 ---------GPIGPGGPP 1461
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.4 bits (80), Expect = 0.058
Identities = 65/251 (25%), Positives = 78/251 (31%), Gaps = 48/251 (19%)
Query: 38 GPTAAKEGSAKR--RGPEALDGSR-----PAPETGCVLGQWKTPEKPRRGRPGSLDFASP 90
GP K ++ +GP DG + P P G V + +K G PG
Sbjct: 1114 GPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGP-AGPVGPPGEDGDKGEIGEPGQKGSKGD 1172
Query: 91 GGAGGPQSPHLPRAPTARRGAAVADTTAFSPWLPRVGGWHLQVHRGGRSCAGARRFGGSR 150
G GP P P+ P + G + AD G Q G + G R F G
Sbjct: 1173 KGEQGPPGPTGPQGPIGQPGPSGAD--------GEPGPRGQQGLFGQKGDEGPRGFPGPP 1224
Query: 151 G-WDLGDLSSAPVASLQWACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARP 209
G L L P + GP P P G APG P
Sbjct: 1225 GPVGLQGLPGPPGEKGETGDVGQMGPPGPPGP---------------RGPSGAPGADG-P 1268
Query: 210 SSCPGNVGEGGAAFLSGVFLEASDLGFALVRRWPRRAVGTCTPPFP-----ESGASDPPC 264
PG +G GA G EA + G G PP P E G S P
Sbjct: 1269 QGPPGGIGNPGAVGEKGEPGEAGEPGLP----------GEGGPPGPKGERGEKGESGPSG 1318
Query: 265 PAAETGPARVP 275
A GP P
Sbjct: 1319 AAGPPGPKGPP 1329
Score = 28.5 bits (62), Expect = 7.0
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 37 RGPT--AAKEGSAKRRGPEALDGSRPAPETGCVLGQWKTPEKPR----RGRPGSLDFASP 90
RGP A EG +G + G P +G P KP RG PG +
Sbjct: 1392 RGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGL 1451
Query: 91 GGAGGPQSPHLPRAPTARRG 110
G+ GP P P P G
Sbjct: 1452 PGSPGPDGPPGPMGPPGLPG 1471
>gi|239754714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.058
Identities = 51/181 (28%), Positives = 68/181 (37%), Gaps = 38/181 (20%)
Query: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGG-----AGGPQSPHLPRAPTARRGAA--- 112
+P + G + +P P RG + F+SP G P P LP A AR A+
Sbjct: 28 SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
Query: 113 VADTTAFSPWLPRVGGWHLQVHRGGRS---CAGA--RRFGGSRGWDLGDLSSAPVASLQW 167
A P V W G RS CAG+ R G G G L V L
Sbjct: 88 SVRAAASGERRPHVPPWD-----GARSRSWCAGSAWREKAGDSG--TGTLRKR-VEGLGD 139
Query: 168 ACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP-------GNVGEGG 220
LPPAA +T+ S +C + +A G G+ P + P G+GG
Sbjct: 140 GVL---------LPPAAPTGFTRTS-TCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGG 189
Query: 221 A 221
+
Sbjct: 190 S 190
>gi|239749263 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.058
Identities = 50/182 (27%), Positives = 68/182 (37%), Gaps = 40/182 (21%)
Query: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGG-----AGGPQSPHLPRAPTARRGAA--- 112
+P + G + +P P RG + F+SP G P P LP A AR A+
Sbjct: 28 SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
Query: 113 VADTTAFSPWLPRVGGWHLQVHRGGRS---CAGARRFGGSRGW--DLGDLSSAPVASLQW 167
A P V W G RS CAG+ W GD + V
Sbjct: 88 SVRAAASGERRPHVPPWD-----GARSRSWCAGS-------AWREKAGDSGTGTVRK--- 132
Query: 168 ACFRWAGPA-SPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP-------GNVGEG 219
R G LPPAA +T+ S +C + +A G G+ P + P G+G
Sbjct: 133 ---RVEGLGDGVLLPPAAPTGFTRTS-TCSSMGAQALGAGSAPGTSPFRGSLTKAGPGDG 188
Query: 220 GA 221
G+
Sbjct: 189 GS 190
>gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo
sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.058
Identities = 51/181 (28%), Positives = 68/181 (37%), Gaps = 38/181 (20%)
Query: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGG-----AGGPQSPHLPRAPTARRGAA--- 112
+P + G + +P P RG + F+SP G P P LP A AR A+
Sbjct: 28 SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
Query: 113 VADTTAFSPWLPRVGGWHLQVHRGGRS---CAGA--RRFGGSRGWDLGDLSSAPVASLQW 167
A P V W G RS CAG+ R G G G L V L
Sbjct: 88 SVRAAASGERRPHVPPWD-----GARSRSWCAGSAWREKAGDSG--TGTLRKR-VEGLGD 139
Query: 168 ACFRWAGPASPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP-------GNVGEGG 220
LPPAA +T+ S +C + +A G G+ P + P G+GG
Sbjct: 140 GVL---------LPPAAPTGFTRTS-TCSSMGAQALGAGSAPGASPFRGSLTKAGPGDGG 189
Query: 221 A 221
+
Sbjct: 190 S 190
>gi|239509052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 35.4 bits (80), Expect = 0.058
Identities = 50/182 (27%), Positives = 68/182 (37%), Gaps = 40/182 (21%)
Query: 61 APETGCVLGQWKTPEKPRRGRPGSLDFASPGG-----AGGPQSPHLPRAPTARRGAA--- 112
+P + G + +P P RG + F+SP G P P LP A AR A+
Sbjct: 28 SPVSVTARGSFSSPSNPARGNSAASSFSSPSSLQRQHVGEPGEPALPSAGLARPSASQPL 87
Query: 113 VADTTAFSPWLPRVGGWHLQVHRGGRS---CAGARRFGGSRGW--DLGDLSSAPVASLQW 167
A P V W G RS CAG+ W GD + V
Sbjct: 88 SVRAAASGERRPHVPPWD-----GARSRSWCAGS-------AWREKAGDSGTGTVRK--- 132
Query: 168 ACFRWAGPA-SPNLPPAAWRTWTQCSVSCYTGQCRAPGRGARPSSCP-------GNVGEG 219
R G LPPAA +T+ S +C + +A G G+ P + P G+G
Sbjct: 133 ---RVEGLGDGVLLPPAAPTGFTRTS-TCSSMGAQALGAGSAPGTSPFRGSLTKAGPGDG 188
Query: 220 GA 221
G+
Sbjct: 189 GS 190
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,738,529
Number of Sequences: 37866
Number of extensions: 944079
Number of successful extensions: 5773
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 5007
Number of HSP's gapped (non-prelim): 913
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.