Guide to the Human Genome
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Name: LOC729424 Sequence: fasta or formatted (285aa) NCBI GI: 239742390
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {285aa} PREDICTED: hypothetical protein
alt prot {136aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         33           2
 C cysteine            3.2          9           1
 D aspartate           3.5         10           1
 E glutamate           3.2          9           1
 F phenylalanine       3.9         11           1
 G glycine            12.6         36           2
 H histidine           1.8          5           1
 I isoleucine          1.1          3           1
 K lysine              2.8          8           1
 L leucine             6.3         18           2
 M methionine          0.7          2           1
 N asparagine          1.4          4           1
 P proline            11.9         34           2
 Q glutamine           3.5         10           1
 R arginine           10.9         31           2
 S serine              7.4         21           2
 T threonine           6.0         17           2
 V valine              4.2         12           1
 W tryptophan          3.9         11           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729424             1.000   PREDICTED: hypothetical protein 
LOC729424             0.027   PREDICTED: hypothetical protein 
COL1A2                0.024   alpha 2 type I collagen 
LOC100292184          0.024   PREDICTED: hypothetical protein 
LOC100289408          0.024   PREDICTED: hypothetical protein 
LOC100289408          0.024   PREDICTED: hypothetical protein XP_002344217 
COL1A1                0.022   alpha 1 type I collagen preproprotein 
COL4A1                0.022   alpha 1 type IV collagen preproprotein 
FLJ31945              0.022   PREDICTED: hypothetical protein 
TAF4                  0.022   TBP-associated factor 4 
C9orf75               0.022   hypothetical protein LOC286262 isoform 2 
C9orf75               0.022   hypothetical protein LOC286262 isoform 1 
LOC100287499          0.020   PREDICTED: hypothetical protein 
LOC100287499          0.020   PREDICTED: hypothetical protein XP_002343643 
COL2A1                0.020   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.020   collagen, type II, alpha 1 isoform 2 precursor [Hom...
FLJ37078              0.020   hypothetical protein LOC222183 
COL16A1               0.019   alpha 1 type XVI collagen precursor 
COL15A1               0.019   alpha 1 type XV collagen precursor 
LOC100293235          0.019   PREDICTED: hypothetical protein 
LOC100291469          0.019   PREDICTED: hypothetical protein XP_002346693 
COL11A2               0.019   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.019   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.019   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL5A1                0.017   alpha 1 type V collagen preproprotein 
LOC100292298          0.017   PREDICTED: hypothetical protein 
LOC100288422          0.017   PREDICTED: hypothetical protein 
LOC100288422          0.017   PREDICTED: hypothetical protein XP_002342827 
LOC100288422          0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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