Guide to the Human Genome
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Name: LOC100288422 Sequence: fasta or formatted (194aa) NCBI GI: 239509052
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {194aa} PREDICTED: hypothetical protein XP_002342827
alt mRNA {194aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         26           3
 C cysteine            1.0          2           1
 D aspartate           2.6          5           1
 E glutamate           3.6          7           1
 F phenylalanine       2.6          5           1
 G glycine            13.4         26           2
 H histidine           1.5          3           1
 I isoleucine          0.0          0           0
 K lysine              1.5          3           1
 L leucine             4.6          9           2
 M methionine          2.1          4           1
 N asparagine          1.5          3           1
 P proline            10.3         20           2
 Q glutamine           3.1          6           1
 R arginine            8.8         17           2
 S serine             15.5         30           2
 T threonine           7.7         15           2
 V valine              4.1          8           1
 W tryptophan          1.5          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288422          1.000   PREDICTED: hypothetical protein 
LOC100292298          0.992   PREDICTED: hypothetical protein 
LOC100288422          0.992   PREDICTED: hypothetical protein XP_002342827 
ARID1A                0.043   AT rich interactive domain 1A isoform a 
ARID1A                0.043   AT rich interactive domain 1A isoform b 
TTMA                  0.041   hypothetical protein LOC645369 
ADCY5                 0.032   adenylate cyclase 5 
LRRC16B               0.032   leucine rich repeat containing 16B 
LOC100287994          0.027   PREDICTED: hypothetical protein 
LOC729424             0.027   PREDICTED: hypothetical protein 
LOC100287994          0.027   PREDICTED: hypothetical protein XP_002342988 
LOC729424             0.027   PREDICTED: hypothetical protein 
MED1                  0.027   mediator complex subunit 1 
DMKN                  0.027   dermokine isoform 4 precursor 
DMKN                  0.027   dermokine isoform 5 precursor 
DMKN                  0.027   dermokine isoform 3 precursor 
DMKN                  0.027   dermokine isoform 2 precursor 
FLJ37078              0.027   hypothetical protein LOC222183 
SPTY2D1               0.027   SPT2, Suppressor of Ty, domain containing 1 
LENG9                 0.027   leukocyte receptor cluster (LRC) member 9 
KIAA1522              0.027   hypothetical protein LOC57648 
SRRM2                 0.027   splicing coactivator subunit SRm300 
TBC1D10B              0.024   TBC1 domain family, member 10B 
FOXD2                 0.024   forkhead box D2 
KRBA1                 0.024   KRAB A domain containing 1 
IRS2                  0.024   insulin receptor substrate 2 
UBE4B                 0.024   ubiquitination factor E4B isoform 1 
SCRT1                 0.024   scratch 
HOXB5                 0.024   homeobox B5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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