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Search of human proteins with 239742332
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo
sapiens]
(67 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 147 2e-36
gi|239748402 PREDICTED: hypothetical protein [Homo sapiens] 147 2e-36
gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo ... 147 2e-36
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 42 1e-04
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 42 1e-04
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 42 1e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 42 1e-04
gi|12707580 paired-like homeobox 2b [Homo sapiens] 41 2e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.002
gi|11056048 doublesex and mab-3 related transcription factor 3 [... 38 0.002
gi|134142824 forkhead box D2 [Homo sapiens] 38 0.002
gi|115430223 galectin 3 [Homo sapiens] 37 0.003
gi|46852172 kinesin family member 13B [Homo sapiens] 37 0.003
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 37 0.004
gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog, yea... 37 0.004
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 37 0.004
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 36 0.006
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 36 0.006
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 36 0.008
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.010
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 35 0.010
gi|106507239 EGFR-coamplified and overexpressed protein [Homo sa... 35 0.013
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 35 0.013
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 35 0.013
gi|169162161 PREDICTED: similar to EGFR-coamplified and overexpr... 35 0.013
gi|113411383 PREDICTED: similar to EGFR-coamplified and overexpr... 35 0.013
gi|33356148 formin-like 1 [Homo sapiens] 35 0.013
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 35 0.017
gi|10863877 phospholipid scramblase 1 [Homo sapiens] 35 0.017
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 147 bits (371), Expect = 2e-36
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 191 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 250
Query: 61 TENAPAS 67
TENAPAS
Sbjct: 251 TENAPAS 257
Score = 28.9 bits (63), Expect = 0.92
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 7 PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA-AAFRGWVAAPDPGCTPGT 61
P G P +P A PPA A+ A AG P A RG AA PGT
Sbjct: 69 PGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGT 124
>gi|239748402 PREDICTED: hypothetical protein [Homo sapiens]
Length = 67
Score = 147 bits (371), Expect = 2e-36
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
Query: 61 TENAPAS 67
TENAPAS
Sbjct: 61 TENAPAS 67
>gi|239742332 PREDICTED: hypothetical protein XP_002342494 [Homo
sapiens]
Length = 67
Score = 147 bits (371), Expect = 2e-36
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG
Sbjct: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
Query: 61 TENAPAS 67
TENAPAS
Sbjct: 61 TENAPAS 67
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 42.0 bits (97), Expect = 1e-04
Identities = 30/61 (49%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 6 APRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 65
AP P AP PV VAAP A A P PA A APA A VAAP P P AP
Sbjct: 144 APAP-APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPA---PVAAPAPAPAPAPAPAP 199
Query: 66 A 66
A
Sbjct: 200 A 200
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
P P AP PV AV AP A A P PA APA A AP P P
Sbjct: 147 PAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPA-PAPAPAPAPAPAPAP 205
Query: 62 ENAP 65
+ AP
Sbjct: 206 DAAP 209
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 42.0 bits (97), Expect = 1e-04
Identities = 30/61 (49%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 6 APRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 65
AP P AP PV VAAP A A P PA A APA A VAAP P P AP
Sbjct: 144 APAP-APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPA---PVAAPAPAPAPAPAPAP 199
Query: 66 A 66
A
Sbjct: 200 A 200
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
P P AP PV AV AP A A P PA APA A AP P P
Sbjct: 147 PAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPA-PAPAPAPAPAPAPAP 205
Query: 62 ENAP 65
+ AP
Sbjct: 206 DAAP 209
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 42.0 bits (97), Expect = 1e-04
Identities = 30/61 (49%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 6 APRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAP 65
AP P AP PV VAAP A A P PA A APA A VAAP P P AP
Sbjct: 155 APAP-APAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPA---PVAAPAPAPAPAPAPAP 210
Query: 66 A 66
A
Sbjct: 211 A 211
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/64 (39%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
P P AP PV AV AP A A P PA APA A AP P P
Sbjct: 158 PAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPA-PAPAPAPAPAPAPAP 216
Query: 62 ENAP 65
+ AP
Sbjct: 217 DAAP 220
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 41.6 bits (96), Expect = 1e-04
Identities = 26/57 (45%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 4 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
P AP P AP P A AAPP A PP P A APA A R AA +PG
Sbjct: 108 PPAP-PRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPG 163
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 2 PGPGAPRPGAPGTWPVGF---AVAAPPAAAASVAP---PPPAVA 39
PGP P P A P+ A AAPPA A P PPPAVA
Sbjct: 162 PGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVA 205
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 24 PPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTENAPAS 67
PP A+ PP A GAPAAA AAP P P AP +
Sbjct: 101 PPRRGATPPAPPRAPRGAPAAAA---AAAPPPTPAPPPPPAPVA 141
Score = 30.8 bits (68), Expect = 0.24
Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPP-----AAAASVAPPPPAVA-GAPAAAFRGWVAAPDP 55
P P P P AP A AAP AAAA+ APP P A P A +AAP P
Sbjct: 129 PTPAPPPPPAP------VAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPP 182
Score = 30.4 bits (67), Expect = 0.32
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAP-PAAAASVAPPP-PAVAGAPAAAFRGWVAAPDP 55
P PG +PG A P PAA +VAPP P A PA A R P P
Sbjct: 160 PSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPP 215
Score = 28.9 bits (63), Expect = 0.92
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 4 PGAPRPGAPGTWPVGFA-VAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTP 59
P +P P PG A +AAPP A A APP A P A VAA +P P
Sbjct: 159 PPSPGPAQPGPRAQRAAPLAAPPPAPA--APPAVAPPAGPRRAPPPAVAAREPPLPP 213
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTP 59
P P AP AP P APP A A+ PP P PA + P P P
Sbjct: 182 PAPAAPPAVAPPAGPR----RAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPP 235
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 40.8 bits (94), Expect = 2e-04
Identities = 27/56 (48%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 4 PGAPRPGAPGTWP-VGFAVAAPPAAAASVAPPPPAVAGAPAAA---FRGWVAAPDP 55
PGA PG PG P G A AA AAAA+ A A AG AAA +GW P P
Sbjct: 224 PGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGP 279
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/65 (38%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPP----------AAAASVAPPPPAVAGAPAAAFRGWVA 51
P GA G G P G AA P AAA+ A A A A AAA G A
Sbjct: 206 PSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAA 265
Query: 52 APDPG 56
A PG
Sbjct: 266 AGGPG 270
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.7 bits (86), Expect = 0.002
Identities = 31/70 (44%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 3 GPGA----PRPGAPGT---WPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP 55
GP A P+P APGT P AAPPA AA P PA A APAA A P P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPA-APAA------APPPP 273
Query: 56 GCTPGTENAP 65
P T P
Sbjct: 274 PPAPATLARP 283
Score = 36.2 bits (82), Expect = 0.006
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 10/71 (14%)
Query: 2 PGPGAPR-PGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP----- 55
P P AP P AP A PP A A++A PP AG P AA A P P
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAA----PAVPPPAAAQN 305
Query: 56 GCTPGTENAPA 66
G + G APA
Sbjct: 306 GGSAGAAPAPA 316
Score = 34.7 bits (78), Expect = 0.017
Identities = 29/71 (40%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 2 PGPGAP-RPGAPGTW-PVGFAVAAPPAAAASVAPPPPAVAG--APAAAFRGWVAAPDPG- 56
PG G P RPG P P+ A APPAA + PPP AG AP A A P+P
Sbjct: 97 PGGGGPQRPGPPSPRRPLVPAGPAPPAA--KLRPPPEGSAGSCAPVPAAAAVAAGPEPAP 154
Query: 57 CTPGTENAPAS 67
P PA+
Sbjct: 155 AGPAKPAGPAA 165
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 2 PGPGA----PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGC 57
PGPGA P PG P AAPPAA A P + A + A P P
Sbjct: 329 PGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAA 388
Query: 58 TP 59
P
Sbjct: 389 VP 390
Score = 32.7 bits (73), Expect = 0.064
Identities = 25/65 (38%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 2 PGPGAPR-----PGAPGTWPVGFAVAAPPAAA-----ASVAPPPPAVAGAPAAAFRGWVA 51
P P AP PG P P PPAAA A AP P AG PA G
Sbjct: 272 PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA----GVSG 327
Query: 52 APDPG 56
P PG
Sbjct: 328 QPGPG 332
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPP----PAVAGAPAAAFRGWVAAPDPGC 57
P P A + P G P AAA + P P PA PAA P PG
Sbjct: 119 PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP 178
Query: 58 TPGTENAP 65
PG P
Sbjct: 179 GPGPGPGP 186
Score = 32.0 bits (71), Expect = 0.11
Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPA-----AAASVAPPPPAVAGAPAAAFRGWVAAPDPG 56
P P AP P P +A PP A+ A PPPA A +A AP G
Sbjct: 261 PAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG 320
Query: 57 CTPGTENAP 65
G P
Sbjct: 321 GPAGVSGQP 329
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAP 53
+P P A P APGT P G A A S++ P A A V AP
Sbjct: 383 LPSPAAVPPPAPGT-PTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAP 434
Score = 30.0 bits (66), Expect = 0.41
Identities = 31/90 (34%), Positives = 34/90 (37%), Gaps = 24/90 (26%)
Query: 2 PGPGAPR-------PGAPGTW----PVGFA--VAAPPAAAASVAPPPPAVAGAPAAAFRG 48
PGP +PR P P P G A A PAAAA A P PA AG A
Sbjct: 105 PGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPA 164
Query: 49 WVAA-----------PDPGCTPGTENAPAS 67
+AA P PG PG P +
Sbjct: 165 ALAARAGPGPGPGPGPGPGPGPGKPAGPGA 194
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCT 58
P P A P P A AA PA P V AP AA +AA P T
Sbjct: 315 PAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAA--QTLAASGPAST 369
>gi|11056048 doublesex and mab-3 related transcription factor 3
[Homo sapiens]
Length = 472
Score = 37.7 bits (86), Expect = 0.002
Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 12 PGTWPVGFAVAAP---PAAAASVAPPPPAVAGAPAAAFRGWVAAPDPG 56
PG P G AVAAP PA+ S PP A AAA W A P PG
Sbjct: 95 PGPPPPGDAVAAPQPPPASQPSQPQPPRPAAELAAAAALRWTAEPQPG 142
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 37.7 bits (86), Expect = 0.002
Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 1 MPGPGAPRPGA---PGTWPVGFAVAAPPAAAASVAPPPPAVAGAP------AAAFRGWVA 51
+P GAP PG P P FA AA AAA PP A AP A+ F G +
Sbjct: 274 LPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAGS 333
Query: 52 APDPGCTPGTENAP 65
AP P G+ P
Sbjct: 334 APAPAPASGSGPGP 347
Score = 29.6 bits (65), Expect = 0.54
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 6 APRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPA 43
AP PG P A +AP A AS + P P AG PA
Sbjct: 317 APPPGPPTASVFAGAGSAPAPAPASGSGPGPGPAGLPA 354
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 16/69 (23%)
Query: 4 PGAPRPG--APGTWPVGFAVAA------PPAAAASVAPPPPAVAGAPAAAFR-------- 47
PGA PG A G + G+ +A PP A P P A A A AAA
Sbjct: 253 PGAFLPGFAAYGAYGYGYGLALPAYGAPPPGPAPHPHPHPHAFAFAAAAAAAPCQLSVPP 312
Query: 48 GWVAAPDPG 56
G AAP PG
Sbjct: 313 GRAAAPPPG 321
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPG 56
PG G PG P FA AA P A V A A AP A G + PG
Sbjct: 428 PGAGEGSPGPP------FAAAAGPGGQAQVLAMLTAPALAPVA---GHIRLSHPG 473
>gi|115430223 galectin 3 [Homo sapiens]
Length = 250
Score = 37.4 bits (85), Expect = 0.003
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 1 MPGPGAPRP-GAPGTW------PVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRG----W 49
+ G G P P G PG W G+ A+ P A APP AP A+ G +
Sbjct: 11 LSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAY 70
Query: 50 VAAPDPGCTPGTENAPAS 67
AP PG PG + P +
Sbjct: 71 PGAPAPGVYPGPPSGPGA 88
>gi|46852172 kinesin family member 13B [Homo sapiens]
Length = 1826
Score = 37.0 bits (84), Expect = 0.003
Identities = 33/99 (33%), Positives = 37/99 (37%), Gaps = 37/99 (37%)
Query: 3 GPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAV----------------------AG 40
GPG PG+ P A A P A S PPP AV A
Sbjct: 1583 GPGLDAAAPPGSMPT--APEAEPEAPISHPPPPTAVPAEEPPGPQQLVSPGRERPDLEAP 1640
Query: 41 APAAAFR------------GWVAAPDPGCTPGTE-NAPA 66
AP + FR + A DPGC+PG E NAPA
Sbjct: 1641 APGSPFRVRRVRASELRSFSRMLAGDPGCSPGAEGNAPA 1679
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 36.6 bits (83), Expect = 0.004
Identities = 27/67 (40%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 3 GPGAPRPGAPGT-WPVGFAVAAPPAAAASVAPP-PPAVAGAPAAAFRGWVAAPDPGCTPG 60
GP P PGAPG P GF P PP PPA+ GA VA P P PG
Sbjct: 1073 GPQGP-PGAPGLPGPPGFGRPGDPGPPGPPGPPGPPAILGAA-------VALPGPPGPPG 1124
Query: 61 TENAPAS 67
P S
Sbjct: 1125 QPGLPGS 1131
>gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog,
yeast) [Homo sapiens]
Length = 545
Score = 36.6 bits (83), Expect = 0.004
Identities = 22/48 (45%), Positives = 23/48 (47%)
Query: 7 PRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPD 54
P+ AP T A AA AA A AP PA A APAA GW D
Sbjct: 14 PQQAAPVTAAAAAAPAAATAAPAPAAPAAPAPAPAPAAQAVGWPICRD 61
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 36.6 bits (83), Expect = 0.004
Identities = 28/67 (41%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 6 APRPGAPGTWPVGFAVAAPPAAAASVAPPP-----PAVAGAPAAAFRGWVAAPDPGCTPG 60
AP P A AA PA AA+ AP P PAVA APAAA AAP P
Sbjct: 517 APAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAAS---AAPSHSQKPS 573
Query: 61 TENAPAS 67
AS
Sbjct: 574 VPLIQAS 580
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 20 AVAAPPAAAASVAPPPPAVAGAPAAAFRGWVA---------APDPGCTPGTENAPAS 67
A AA AAAA+ A P PA+A A A A A AP P P APA+
Sbjct: 504 AAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAA 560
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 36.2 bits (82), Expect = 0.006
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPA--AAASVAPPPPAVAGA---PAAAFRGWVAAPDPG 56
P P P P P P G +++PP+ +++PPPP A P V P P
Sbjct: 599 PPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPS 658
Query: 57 CTPGTENAP 65
PG P
Sbjct: 659 SLPGGTAIP 667
Score = 35.4 bits (80), Expect = 0.010
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 4 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
P P PG GT + PPA S PPPP P G V P PG
Sbjct: 575 PAPPLPGDSGT-----IIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPG 626
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFR-GWVAAP 53
MP P P PG PG P P + PPPP + P F G AAP
Sbjct: 704 MPPPPPPLPGGPGIPP-----PPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAP 752
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 1 MPGPGAPRPGAPGTWP--------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 52
+P P P PG+ G P G PP PPPP G P +
Sbjct: 678 IPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPG------IPP 731
Query: 53 PDPG 56
P PG
Sbjct: 732 PPPG 735
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 3 GPGAPRPGAPGTWPVGFAVAAPP--AAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
G G P +P + P G A+ PP +A + PPPP + G+ P P PG
Sbjct: 651 GVGIP---SPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAG-------IPPPPPPLPG 700
Query: 61 TENAP 65
P
Sbjct: 701 EAGMP 705
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 3 GPGAPRP----GAPGTWPVGFAVAAPPAAAASVAP 33
GPG P P G P P GF V A P + P
Sbjct: 726 GPGIPPPPPGMGMPPPPPFGFGVPAAPVLPFGLTP 760
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 36.2 bits (82), Expect = 0.006
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPA--AAASVAPPPPAVAGA---PAAAFRGWVAAPDPG 56
P P P P P P G +++PP+ +++PPPP A P V P P
Sbjct: 608 PPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPS 667
Query: 57 CTPGTENAP 65
PG P
Sbjct: 668 SLPGGTAIP 676
Score = 35.4 bits (80), Expect = 0.010
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 4 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
P P PG GT + PPA S PPPP P G V P PG
Sbjct: 584 PAPPLPGDSGT-----IIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPG 635
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 1 MPGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFR-GWVAAP 53
MP P P PG PG P P + PPPP + P F G AAP
Sbjct: 713 MPPPPPPLPGGPGIPP-----PPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAP 761
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 14/64 (21%)
Query: 1 MPGPGAPRPGAPGTWP--------VGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAA 52
+P P P PG+ G P G PP PPPP G P +
Sbjct: 687 IPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGPG------IPP 740
Query: 53 PDPG 56
P PG
Sbjct: 741 PPPG 744
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 12/65 (18%)
Query: 3 GPGAPRPGAPGTWPVGFAVAAPP--AAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPG 60
G G P +P + P G A+ PP +A + PPPP + G+ P P PG
Sbjct: 660 GVGIP---SPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAG-------IPPPPPPLPG 709
Query: 61 TENAP 65
P
Sbjct: 710 EAGMP 714
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 3 GPGAPRP----GAPGTWPVGFAVAAPPAAAASVAP 33
GPG P P G P P GF V A P + P
Sbjct: 735 GPGIPPPPPGMGMPPPPPFGFGVPAAPVLPFGLTP 769
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 4 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTEN 63
P P P P P P AAA V PA + PAAA A PG TP +
Sbjct: 12 PATPTP-VPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAA---AATAAPGQTPASAQ 67
Query: 64 APA 66
APA
Sbjct: 68 APA 70
Score = 27.7 bits (60), Expect = 2.0
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 6 APRPGAPGTWPVGFAVAA----PPAAAASVAPP--PPAVAGAPAAAFRGWVAAPD-PGCT 58
AP P AP PV A A P AAAA+ A P PA A APA + P PG
Sbjct: 28 APTP-APAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPGPALPGPF 86
Query: 59 PG 60
PG
Sbjct: 87 PG 88
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPAAAASV 31
P P P P PG +P G V P AS+
Sbjct: 73 PAPALPGPALPGPFPGGRVVRLHPVILASI 102
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.4 bits (80), Expect = 0.010
Identities = 26/64 (40%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 2 PGPGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
PGP P G PG P+G V AP A A + PP G P AA G V P P G
Sbjct: 841 PGPAGPA-GPPG--PIG-NVGAPGAKGARGSAGPPGATGFPGAA--GRVGPPGPSGNAGP 894
Query: 62 ENAP 65
P
Sbjct: 895 PGPP 898
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 35.4 bits (80), Expect = 0.010
Identities = 26/64 (40%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 5 GAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVA---APDPGCTPGT 61
G PRP P P PP AA PPPP GAPA RG + A P P T
Sbjct: 305 GEPRPAEPRAPP------RPPPAARR--PPPPPAPGAPARPLRGRRSHGPAARPRAVPTT 356
Query: 62 ENAP 65
AP
Sbjct: 357 SLAP 360
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 35.4 bits (80), Expect = 0.010
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 4 PGAPRP-GAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGTE 62
P P P AP P+ V+APP A AP PP+ A V AP P TP
Sbjct: 291 PSGPVPLSAPAPAPLSVPVSAPPLALIQ-APVPPSAPTLVLAPVPTPVLAPMPASTPPAA 349
Query: 63 NAPAS 67
AP S
Sbjct: 350 PAPPS 354
>gi|106507239 EGFR-coamplified and overexpressed protein [Homo
sapiens]
Length = 172
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 2 PGPGAPR--------PGAPGTWPVGFAVA-----APPAAAASVA-PPPPAVAGAPAAAFR 47
PGPGA + PG PG PVG ++A P + SVA PPPPA P +
Sbjct: 107 PGPGAQQPGPPYYTDPGGPGMNPVGNSMAMAFQVPPNSPQGSVACPPPPAYCNTPPPPYE 166
Query: 48 GWVAA 52
V A
Sbjct: 167 QVVKA 171
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 4 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA---FRGWVAAPDPGCTPG 60
P PRP AP T P APP PPPP+ A +PA F G A P PG
Sbjct: 1147 PPPPRPVAPPTRP------APPQ-----RPPPPSGARSPAPTRKEFGGIGAPPSPGVARR 1195
Query: 61 TENAPAS 67
AP S
Sbjct: 1196 EMEAPKS 1202
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 4 PGAPRPGAPGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAA---FRGWVAAPDPGCTPG 60
P PRP AP T P APP PPPP+ A +PA F G A P PG
Sbjct: 1147 PPPPRPVAPPTRP------APPQ-----RPPPPSGARSPAPTRKEFGGIGAPPSPGVARR 1195
Query: 61 TENAPAS 67
AP S
Sbjct: 1196 EMEAPKS 1202
>gi|169162161 PREDICTED: similar to EGFR-coamplified and
overexpressed protein [Homo sapiens]
Length = 172
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 2 PGPGAPR--------PGAPGTWPVGFAVA-----APPAAAASVA-PPPPAVAGAPAAAFR 47
PGPGA + PG PG PVG ++A P + SVA PPPPA P +
Sbjct: 107 PGPGAQQPGPPYYTDPGGPGMNPVGNSMAMAFQVPPNSPQGSVACPPPPAYCNTPPPPYE 166
Query: 48 GWVAA 52
V A
Sbjct: 167 QVVKA 171
>gi|113411383 PREDICTED: similar to EGFR-coamplified and
overexpressed protein [Homo sapiens]
Length = 172
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 2 PGPGAPR--------PGAPGTWPVGFAVA-----APPAAAASVA-PPPPAVAGAPAAAFR 47
PGPGA + PG PG PVG ++A P + SVA PPPPA P +
Sbjct: 107 PGPGAQQPGPPYYTDPGGPGMNPVGNSMAMAFQVPPNSPQGSVACPPPPAYCNTPPPPYE 166
Query: 48 GWVAA 52
V A
Sbjct: 167 QVVKA 171
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 3 GPGAPRPGAP-GTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTPGT 61
G AP PG P G+ A AA PA A+ PPPP + G P+ A P PG+
Sbjct: 513 GGDAPTPGVPTGSPSPDLAPAAEPAPGAA-PPPPPPLPGLPSPQEAPPSAPPQAPPLPGS 571
Query: 62 ENAP 65
P
Sbjct: 572 PEPP 575
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 2 PGPGAPRPGAPGTW--PVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGCTP 59
P P P PG P P APP + PP P + G P P P
Sbjct: 542 PPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPP------PPPPPPPPP 595
Query: 60 GTE 62
GT+
Sbjct: 596 GTD 598
Score = 25.8 bits (55), Expect = 7.8
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 2 PGPGAPRPGA----PGTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDPGC 57
P PG+P P PG P PP PPPP P + D
Sbjct: 567 PLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGPPDALGRRDSEL 626
Query: 58 TPGTE 62
PG +
Sbjct: 627 GPGVK 631
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 5 GAPRPGAPGTWPVGFAVAAPPAAAASVAP----PPPAVAGAPAAAFRGWVAAPDPGCTPG 60
G+ PG P P AAPP++ V P PPPA APA R + + G +P
Sbjct: 310 GSSSPGTPQPAPQLPLNAAPPSSVPPVPPSEALPPPACPSAPAP--RRSIISRLFGTSPA 367
Query: 61 TENAP 65
TE AP
Sbjct: 368 TEAAP 372
>gi|10863877 phospholipid scramblase 1 [Homo sapiens]
Length = 318
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/67 (35%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 2 PGPGAPRPGAP----GTWPVGFAVAAPPAAAASVAPPPPAVAGAPAAAFRGWVAAPDP-- 55
PGP P P G P GF V P V P AG P W+ AP P
Sbjct: 40 PGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVP------WMPAPQPPL 93
Query: 56 GCTPGTE 62
C PG E
Sbjct: 94 NCPPGLE 100
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,247,668
Number of Sequences: 37866
Number of extensions: 360055
Number of successful extensions: 6190
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 506
Number of HSP's that attempted gapping in prelim test: 3454
Number of HSP's gapped (non-prelim): 2493
length of query: 67
length of database: 18,247,518
effective HSP length: 40
effective length of query: 27
effective length of database: 16,732,878
effective search space: 451787706
effective search space used: 451787706
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.