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Search of human proteins with 239742186
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742186 PREDICTED: hypothetical protein XP_002342447 [Homo
sapiens]
(114 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748286 PREDICTED: hypothetical protein [Homo sapiens] 237 1e-63
gi|239742186 PREDICTED: hypothetical protein XP_002342447 [Homo ... 237 1e-63
gi|239753692 PREDICTED: hypothetical protein XP_002345754 [Homo ... 215 7e-57
gi|66730423 hypothetical protein LOC389384 [Homo sapiens] 32 0.083
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 31 0.18
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 31 0.18
gi|169168434 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|113417342 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|113416881 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 29 0.92
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 29 0.92
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 29 0.92
gi|41352705 kinesin family member 3C [Homo sapiens] 29 0.92
gi|239755029 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 28 2.0
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 28 2.0
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 28 2.0
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens] 28 2.0
gi|169160905 PREDICTED: similar to nuclear transport factor 2 [H... 27 2.7
gi|22129776 HtrA serine peptidase 3 [Homo sapiens] 27 2.7
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|194353979 acetyl-Coenzyme A acyltransferase 1 isoform b [Homo... 27 3.5
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 27 3.5
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 27 4.6
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 27 4.6
gi|30795231 brain abundant, membrane attached signal protein 1 [... 26 5.9
>gi|239748286 PREDICTED: hypothetical protein [Homo sapiens]
Length = 114
Score = 237 bits (605), Expect = 1e-63
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MRSRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 60
MRSRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG
Sbjct: 1 MRSRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 60
Query: 61 GERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPPLE 114
GERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPPLE
Sbjct: 61 GERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPPLE 114
>gi|239742186 PREDICTED: hypothetical protein XP_002342447 [Homo
sapiens]
Length = 114
Score = 237 bits (605), Expect = 1e-63
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MRSRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 60
MRSRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG
Sbjct: 1 MRSRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 60
Query: 61 GERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPPLE 114
GERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPPLE
Sbjct: 61 GERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPPLE 114
>gi|239753692 PREDICTED: hypothetical protein XP_002345754 [Homo
sapiens]
Length = 228
Score = 215 bits (547), Expect = 7e-57
Identities = 104/114 (91%), Positives = 106/114 (92%)
Query: 1 MRSRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 60
+R R+ SAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG
Sbjct: 115 IRERSPLRRLHYSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 174
Query: 61 GERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPPLE 114
GERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPPLE
Sbjct: 175 GERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPPLE 228
>gi|66730423 hypothetical protein LOC389384 [Homo sapiens]
Length = 652
Score = 32.3 bits (72), Expect = 0.083
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 2 RSRTAKGEKR-GSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 60
+ T+K +R G+A ASP R+ +R + LP C R S L +E LP
Sbjct: 446 KKHTSKEPRRAGAAGAASPEARRPKRPSFLPLCVGGHRPSTSSSLDPED-LECREPLPAE 504
Query: 61 GERAWVQQ-PSPSR-EQQKGGTRQNDLCFPKEV 91
GE + + PS +R +G + + C KE+
Sbjct: 505 GEPVVISEAPSQARGHTPEGAPQLSGACESKEI 537
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 31.2 bits (69), Expect = 0.18
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 40 SGRWP--LSRRSAIEAFP-DLPRGGERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDN 96
S RWP L+ R ++ F + P GE +PSPS + G T ++ P E SDD
Sbjct: 735 SQRWPQSLNMRQSLSTFSSENPSDGEEGTASEPSPSGTPEVGSTNTDER--PDE-RSDDM 791
Query: 97 LGRDEKGRSFGERPPPLE 114
+G PPP E
Sbjct: 792 C---SQGSEIPLDPPPSE 806
>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
sapiens]
Length = 954
Score = 31.2 bits (69), Expect = 0.18
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 15/97 (15%)
Query: 12 GSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGGERAWVQQPSP 71
G++ PASP+I R L G SG GG W + P
Sbjct: 500 GASPPASPSIIPRLRAIRLTPVDCGGSSSGS---------------SSGGSGTWSRGGPP 544
Query: 72 SREQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGE 108
+E+ GG ++ P + +G +E+ + GE
Sbjct: 545 KKEELVGGKKKGRTWGPSSTLQKERVGGEERLKGLGE 581
>gi|169168434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 2 RSRTAKGEKRGSAVPASPAIRQARRDALLPACKAV--GRRSGRWPLSRR 48
RS G PA PA P C AV G RSG WPLSRR
Sbjct: 121 RSPRTPGAGPWPPAPARPAA---------PPCSAVRLGYRSGEWPLSRR 160
>gi|113417342 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 2 RSRTAKGEKRGSAVPASPAIRQARRDALLPACKAV--GRRSGRWPLSRR 48
RS G PA PA P C AV G RSG WPLSRR
Sbjct: 121 RSPRTPGAGPWPPAPARPAA---------PPCSAVRLGYRSGEWPLSRR 160
>gi|113416881 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 2 RSRTAKGEKRGSAVPASPAIRQARRDALLPACKAV--GRRSGRWPLSRR 48
RS G PA PA P C AV G RSG WPLSRR
Sbjct: 121 RSPRTPGAGPWPPAPARPAA---------PPCSAVRLGYRSGEWPLSRR 160
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 8 GEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGGERAWVQ 67
G+K+G +R+A+R + GR+ RW RR A +A PRGG +
Sbjct: 384 GDKKG--------LREAKR-------RGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPR 428
Query: 68 QPSPSREQQKGG 79
+ P + +GG
Sbjct: 429 RRGPKAAKSRGG 440
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 28.9 bits (63), Expect = 0.92
Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 9 EKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGGERAWVQQ 68
E+ +P + AI +L PA + R R+ S SA A L RG E Q
Sbjct: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
Query: 69 PSPSR-EQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPP 112
P P+ Q GG + L LG +GR PPP
Sbjct: 121 PRPAGVAQGSGGGGERWL---------QGLG-PPRGRGLSTAPPP 155
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 28.9 bits (63), Expect = 0.92
Identities = 31/105 (29%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 9 EKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGGERAWVQQ 68
E+ +P + AI +L PA + R R+ S SA A L RG E Q
Sbjct: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
Query: 69 PSPSR-EQQKGGTRQNDLCFPKEVHSDDNLGRDEKGRSFGERPPP 112
P P+ Q GG + L LG +GR PPP
Sbjct: 121 PRPAGVAQGSGGGGERWL---------QGLG-PPRGRGLSTAPPP 155
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 28.9 bits (63), Expect = 0.92
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 12 GSAVPASPAIRQARRDALLPACK-AVGRRSGRWPLSRRSAIEAFPDLPRGGERAWVQQPS 70
G P PA +Q + A K A G+ SG +++ A P G + Q
Sbjct: 159 GEQQPQPPATQQQQPQQQRGAAKEAAGKSSGP------TSLFAVTVAPPGARQGQQQAGG 212
Query: 71 PSREQQKGGTRQNDLCFPKEVHSD---DNLGRDEKGRSFGERPP 111
+ +QKGG ++ + P+E H + + ++ R+ +PP
Sbjct: 213 DGKTEQKGGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPP 256
>gi|41352705 kinesin family member 3C [Homo sapiens]
Length = 793
Score = 28.9 bits (63), Expect = 0.92
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 25/138 (18%)
Query: 2 RSRTAKGEKRGSAVPASPAIRQ-----ARRDALLPACKAVGRRSGRWPLSRRSAIEAFPD 56
R++ K + R + P +R+ AR A L +G+R R R+ A+ A P
Sbjct: 361 RAKNIKNKPRVNEDPKDTLLREFQEEIARLKAQLEKRGMLGKRPRRKSSRRKKAVSAPPG 420
Query: 57 LPRGGE-RAWVQQ-----------PSPSREQQKGGTRQNDLCFPKE--------VHSDDN 96
P G AWV + P P E +N L KE + D +
Sbjct: 421 YPEGPVIEAWVAEEEDDNNNNHRPPQPILESALEKNMENYLQEQKERLEEEKAAIQDDRS 480
Query: 97 LGRDEKGRSFGERPPPLE 114
L +EK + E+ LE
Sbjct: 481 LVSEEKQKLLEEKEKMLE 498
>gi|239755029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/71 (30%), Positives = 29/71 (40%)
Query: 9 EKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGGERAWVQQ 68
E+ +P + AI +L PA + R R+ S SA A L RG E Q
Sbjct: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
Query: 69 PSPSREQQKGG 79
P P+ Q G
Sbjct: 121 PRPAGVAQGSG 131
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 39 RSGRWPLSRRSAIEAFPDLPRGGERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLG 98
R GR ++ + P P+ ++ QQ P QQ T+Q F + N G
Sbjct: 915 RDGRQQPPQQPQQQPQPQAPQQPQQQ--QQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSG 972
Query: 99 RDEK---GRSFGER 109
RD++ RSFG R
Sbjct: 973 RDQERFGRRSFGNR 986
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 39 RSGRWPLSRRSAIEAFPDLPRGGERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLG 98
R GR ++ + P P+ ++ QQ P QQ T+Q F + N G
Sbjct: 922 RDGRQQPPQQPQQQPQPQAPQQPQQQ--QQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSG 979
Query: 99 RDEK---GRSFGER 109
RD++ RSFG R
Sbjct: 980 RDQERFGRRSFGNR 993
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [Homo
sapiens]
Length = 1147
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 39 RSGRWPLSRRSAIEAFPDLPRGGERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLG 98
R GR ++ + P P+ ++ QQ P QQ T+Q F + N G
Sbjct: 937 RDGRQQPPQQPQQQPQPQAPQQPQQQ--QQQQPPPSQQPPPTQQQPQQFRNDNRQQFNSG 994
Query: 99 RDEK---GRSFGER 109
RD++ RSFG R
Sbjct: 995 RDQERFGRRSFGNR 1008
>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 27.7 bits (60), Expect = 2.0
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 8 GEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGGERAWVQ 67
GE+RG +PA + ARR R + P+++ +A+ P G R
Sbjct: 112 GERRGRGIPAPAKLGGARRS-----------RRAQPPITQERG-DAWATAPADGSRGSRP 159
Query: 68 QPSPSREQQK----GGTRQNDLCFP 88
SRE+ K GG+ DL P
Sbjct: 160 LAKGSREEVKAPRAGGSAAEDLRLP 184
>gi|169160905 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 340
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 28 ALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGGERAW 65
A+ C +VG R RW L AI + +PR G W
Sbjct: 110 AVSTKCASVGDRGVRWGLGGSWAIPSTGSVPRPGGPRW 147
>gi|22129776 HtrA serine peptidase 3 [Homo sapiens]
Length = 453
Score = 27.3 bits (59), Expect = 2.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 55 PDLPRGGERAWVQQPSPSREQQKGGTRQNDL 85
PD P +VQ+ +P+ Q+GG + D+
Sbjct: 377 PDFPEVSSGIYVQEVAPNSPSQRGGIQDGDI 407
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 26.9 bits (58), Expect = 3.5
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 2 RSRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGG 61
R R + EKR P SPA A A P+ +G +++ A P PR
Sbjct: 169 RDRIMREEKRRLFTPLSPAAAAAAAAASAPS-------AGSSSSCSSASLPASP-APRAA 220
Query: 62 ERAWVQQPSPSREQQKGGTRQNDLCFPKEVHSDDNLGRDEKG 103
+A S + G+R ++ HS D+L R +G
Sbjct: 221 RKASPSPSSARTQPPPAGSRTG-----RKSHSLDSLSRRREG 257
>gi|194353979 acetyl-Coenzyme A acyltransferase 1 isoform b [Homo
sapiens]
Length = 331
Score = 26.9 bits (58), Expect = 3.5
Identities = 24/89 (26%), Positives = 31/89 (34%)
Query: 15 VPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGGERAWVQQPSPSRE 74
VP S RQ A A G R+G + + I + R G Q
Sbjct: 114 VPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGITSENVAERFGISREKQDTFALAS 173
Query: 75 QQKGGTRQNDLCFPKEVHSDDNLGRDEKG 103
QQK Q+ CF E+ D+KG
Sbjct: 174 QQKAARAQSKGCFQAEIVPVTTTVHDDKG 202
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 26.9 bits (58), Expect = 3.5
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 2 RSRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRGG 61
RSRT+ +R S SP R+ R P + RS P RR + P LPR
Sbjct: 1983 RSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRR-RSRSRTPPAIRRRSRSRTPLLPR-- 2039
Query: 62 ERAWVQQPSPSREQQKGGT 80
+R+ + P R + + T
Sbjct: 2040 KRSRSRSPLAIRRRSRSRT 2058
>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 3 SRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 60
+R+ + KR + P A R R PAC+A+ G +AI P PRG
Sbjct: 1238 NRSDRSRKRKAIAPTPGAPRIDRS----PACRAIAPTPGALGDDSSTAIAPTPGTPRG 1291
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 16 PASPAIRQARRDALLPACKAVGRRSG---RWPLSRRSAIEAFPDLPRGGERAWVQQPSPS 72
PA P++ AR DA P+ + R + PL+R SA+ P L + +W + P S
Sbjct: 155 PAGPSL--ARPDAARPSVPSAPRCASCPPHAPLARPSAVAEGPGLAQASGGSWRRCPGAS 212
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 3 SRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 60
+R+ + KR + P A R R PAC+A+ G +AI P PRG
Sbjct: 1206 NRSDRSRKRKAIAPTPGAPRIDRS----PACRAIAPTPGALGDDSSTAIAPTPGTPRG 1259
>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1934
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 3 SRTAKGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRRSAIEAFPDLPRG 60
+R+ + KR + P A R R PAC+A+ G +AI P PRG
Sbjct: 1112 NRSDRSRKRKAIAPTPGAPRIDRS----PACRAIAPTPGALGDDSSTAIAPTPGTPRG 1165
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 16 PASPAIRQARRDALLPACKAVGRRSG---RWPLSRRSAIEAFPDLPRGGERAWVQQPSPS 72
PA P++ AR DA P+ + R + PL+R SA+ P L + +W + P S
Sbjct: 155 PAGPSL--ARPDAARPSVPSAPRCASCPPHAPLARPSAVAEGPGLAQASGGSWRRCPGAS 212
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 26.2 bits (56), Expect = 5.9
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 7 KGEKRGSAVPASPAIRQARRDALLPACKAVGRRSGRWPLSRR--SAIEAFPDLPRG-GER 63
+GE + + PA+PA ++ + D PA + S P S+ +A EA P+ G
Sbjct: 145 EGEPKKTEAPAAPAAQETKSDG-APASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPA 203
Query: 64 AWVQQPSP 71
A ++P P
Sbjct: 204 ASAEEPKP 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,611,824
Number of Sequences: 37866
Number of extensions: 272372
Number of successful extensions: 577
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 52
length of query: 114
length of database: 18,247,518
effective HSP length: 84
effective length of query: 30
effective length of database: 15,066,774
effective search space: 452003220
effective search space used: 452003220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.