Guide to the Human Genome
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Name: ACAA1 Sequence: fasta or formatted (331aa) NCBI GI: 194353979
Description:

acetyl-Coenzyme A acyltransferase 1 isoform b

Referenced in:

Cholesterol Biosynthesis
Peroxisomes

Other entries for this name:
alt prot [424aa] acetyl-Coenzyme A acyltransferase 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         40           3
 C cysteine            2.7          9           1
 D aspartate           4.5         15           2
 E glutamate           4.5         15           1
 F phenylalanine       2.7          9           1
 G glycine            10.9         36           2
 H histidine           1.2          4           1
 I isoleucine          5.1         17           1
 K lysine              4.5         15           2
 L leucine             7.6         25           2
 M methionine          2.4          8           1
 N asparagine          2.7          9           1
 P proline             5.1         17           2
 Q glutamine           5.1         17           2
 R arginine            6.0         20           2
 S serine              6.0         20           2
 T threonine           6.6         22           3
 V valine              8.5         28           4
 W tryptophan          0.3          1           1
 Y tyrosine            1.2          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   acetyl-Coenzyme A acyltransferase 1 isoform b [Homo... 
ACAA1                 0.889   acetyl-Coenzyme A acyltransferase 1 isoform a 
ACAA2                 0.152   acetyl-coenzyme A acyltransferase 2 
ACAT1                 0.125   acetyl-Coenzyme A acetyltransferase 1 precursor [Homo...
ACAT2                 0.122   acetyl-Coenzyme A acetyltransferase 2 
HADHB                 0.121   mitochondrial trifunctional protein, beta subunit pre...
SCP2                  0.040   sterol carrier protein 2 isoform 1 proprotein 
SCP2                  0.030   sterol carrier protein 2 isoform 2 
LOC731985             0.006   PREDICTED: similar to ribosomal protein L23a 
ATP8A2                0.006   ATPase, aminophospholipid transporter-like, Class I...
SH3TC1                0.005   SH3 domain and tetratricopeptide repeats 1 
C3orf20               0.005   hypothetical protein LOC84077 
AKAP11                0.005   A-kinase anchor protein 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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