Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287426 Sequence: fasta or formatted (114aa) NCBI GI: 239748286
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {114aa} PREDICTED: hypothetical protein XP_002342447
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         11           1
 C cysteine            1.8          2           1
 D aspartate           5.3          6           2
 E glutamate           7.0          8           1
 F phenylalanine       2.6          3           1
 G glycine             9.6         11           2
 H histidine           0.9          1           1
 I isoleucine          1.8          2           1
 K lysine              5.3          6           1
 L leucine             6.1          7           2
 M methionine          0.9          1           1
 N asparagine          1.8          2           1
 P proline            10.5         12           3
 Q glutamine           5.3          6           2
 R arginine           15.8         18           2
 S serine              8.8         10           1
 T threonine           1.8          2           1
 V valine              3.5          4           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287426          1.000   PREDICTED: hypothetical protein XP_002342447 
LOC100291976          0.896   PREDICTED: hypothetical protein XP_002345754 
C6orf222              0.033   hypothetical protein LOC389384 
MAP3K12               0.028   mitogen-activated protein kinase kinase kinase 12 [H...
MAP3K10               0.028   mitogen-activated protein kinase kinase kinase 10 [H...
LOC729378             0.024   PREDICTED: hypothetical protein 
LOC729378             0.024   PREDICTED: hypothetical protein 
LOC729378             0.024   PREDICTED: hypothetical protein 
LOC100292370          0.024   PREDICTED: hypothetical protein 
LOC100291533          0.019   PREDICTED: hypothetical protein XP_002347080 
LOC100288002          0.019   PREDICTED: hypothetical protein XP_002342946 
HNRNPU                0.019   heterogeneous nuclear ribonucleoprotein U isoform b ...
KIF3C                 0.019   kinesin family member 3C 
LOC100294035          0.014   PREDICTED: hypothetical protein 
SFRS15                0.014   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.014   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.014   splicing factor, arginine/serine-rich 15 isoform 1 [...
SORCS3                0.014   VPS10 domain receptor protein SORCS 3 
LOC128322             0.009   PREDICTED: similar to nuclear transport factor 2 [H...
HTRA3                 0.009   HtrA serine peptidase 3 
LOC100130174          0.009   PREDICTED: hypothetical protein 
ACAA1                 0.009   acetyl-Coenzyme A acyltransferase 1 isoform b [Homo...
SRRM2                 0.009   splicing coactivator subunit SRm300 
LOC728317             0.009   PREDICTED: hypothetical protein 
BHLHA9                0.009   PREDICTED: basic helix-loop-helix family, member a9...
LOC728317             0.009   PREDICTED: hypothetical protein 
LOC728307             0.009   PREDICTED: hypothetical protein 
BHLHA9                0.009   PREDICTED: basic helix-loop-helix family, member a9...
BASP1                 0.005   brain abundant, membrane attached signal protein 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press