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Search of human proteins with 239742114
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
(329 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 667 0.0
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 456 e-128
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 331 5e-91
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 233 2e-61
gi|8393009 chromosome 11 open reading frame2 [Homo sapiens] 140 2e-33
gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo ... 106 3e-23
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 46 4e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 45 1e-04
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 44 2e-04
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 44 2e-04
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 44 2e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 44 2e-04
gi|194272140 dendrin [Homo sapiens] 44 2e-04
gi|150170670 piccolo isoform 2 [Homo sapiens] 44 2e-04
gi|150378539 piccolo isoform 1 [Homo sapiens] 44 2e-04
gi|239742249 PREDICTED: hypothetical protein XP_002342465 [Homo ... 44 3e-04
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 44 3e-04
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 43 3e-04
gi|145199237 transcription elongation factor B polypeptide 3 bin... 43 3e-04
gi|153792074 proline rich 12 [Homo sapiens] 43 3e-04
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 43 4e-04
gi|46409372 G protein-coupled receptor 153 [Homo sapiens] 43 4e-04
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 42 6e-04
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 42 6e-04
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 42 6e-04
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 42 6e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 42 6e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 42 6e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 42 6e-04
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 667 bits (1722), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MLKLYNGLSEGEAVRLLAGTDPLDPTDLNGAHFNPEVYLDKLPRECPLAQLMDSETDMVQ 60
MLKLYNGLSEGEAVRLLAGTDPLDPTDLNGAHFNPEVYLDKLPRECPLAQLMDSETDMVQ
Sbjct: 1 MLKLYNGLSEGEAVRLLAGTDPLDPTDLNGAHFNPEVYLDKLPRECPLAQLMDSETDMVQ 60
Query: 61 QIRALDSDMQTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMP 120
QIRALDSDMQTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMP
Sbjct: 61 QIRALDSDMQTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMP 120
Query: 121 SSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPR 180
SSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPR
Sbjct: 121 SSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPR 180
Query: 181 REEDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVR 240
REEDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVR
Sbjct: 181 REEDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVR 240
Query: 241 GCQGRGVGAAGGSVAGPGLKLVIERQLRRARSDSSFYGNTLFEEPMKQCQAGVRTSSDFF 300
GCQGRGVGAAGGSVAGPGLKLVIERQLRRARSDSSFYGNTLFEEPMKQCQAGVRTSSDFF
Sbjct: 241 GCQGRGVGAAGGSVAGPGLKLVIERQLRRARSDSSFYGNTLFEEPMKQCQAGVRTSSDFF 300
Query: 301 EEESPFLHSQAMSEWIKKNRVPFYEILSA 329
EEESPFLHSQAMSEWIKKNRVPFYEILSA
Sbjct: 301 EEESPFLHSQAMSEWIKKNRVPFYEILSA 329
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 456 bits (1172), Expect = e-128
Identities = 249/336 (74%), Positives = 254/336 (75%), Gaps = 64/336 (19%)
Query: 1 MLKLYNGLSEGEAVRLLAGTDPLDPTDLNGAHFNPEVYLDKLPRECPLAQLMDSETDMVQ 60
MLKLYNGLSEGEAV L AG DPLDPTDLNGAHF+PEVYLDKLPRE PLAQLMDSETDMVQ
Sbjct: 14 MLKLYNGLSEGEAVGLPAGPDPLDPTDLNGAHFDPEVYLDKLPRESPLAQLMDSETDMVQ 73
Query: 61 QIRALDSDMQTLVYENYDK-------------PPSAKC---------------------- 85
QIRALDSDMQTLVYENYDK PPSAK
Sbjct: 74 QIRALDSDMQTLVYENYDKFIPATEMTNSIKLPPSAKSINVSGIGRPSGCNLVGAGRRCR 133
Query: 86 -----------------------RRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSS 122
RRPGPGVSAV A GQQRAPES ERPAEE PA MPSS
Sbjct: 134 AWPERAWPQAGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSS 193
Query: 123 APRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRRE 182
APRGPTEPA RRPSSADRPLAPGPSSSPGAGRAP AMASPSGSS+ATGKPRGRDG PRRE
Sbjct: 194 APRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRRE 253
Query: 183 EDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGV--- 239
EDDV PEEKRLRLLLE GSAQP +DGEDAPRPGRK+TGTQTGGDGRGVSD GAGV
Sbjct: 254 EDDVTPEEKRLRLLLEEGSAQP---DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGC 310
Query: 240 RGCQGRGVGAAGGSVAGPGLKLVIERQLRRARSDSS 275
RGC+GRGVGAAGGSVAGPGLKLV ERQLRRARSDSS
Sbjct: 311 RGCRGRGVGAAGGSVAGPGLKLVTERQLRRARSDSS 346
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 331 bits (849), Expect = 5e-91
Identities = 170/193 (88%), Positives = 174/193 (90%), Gaps = 6/193 (3%)
Query: 86 RRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPG 145
RRPGPGVSAV A GQQRAPES ERPAEE PA MPSSAPRGPTEPA RRPSSADRPLAPG
Sbjct: 54 RRPGPGVSAVGASGQQRAPESNERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPG 113
Query: 146 PSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPE 205
PSSSPGAGRAP AMASPSGSS+ATGKPRGRDG PRREEDDV PEEKRLRLLLE GSAQP
Sbjct: 114 PSSSPGAGRAPGAMASPSGSSKATGKPRGRDGRPRREEDDVTPEEKRLRLLLEEGSAQP- 172
Query: 206 DCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGV---RGCQGRGVGAAGGSVAGPGLKLV 262
+DGEDAPRPGRK+TGTQTGGDGRGVSD GAGV RGC+GRGVGAAGGSVAGPGLKLV
Sbjct: 173 --DDGEDAPRPGRKETGTQTGGDGRGVSDAGAGVRGCRGCRGRGVGAAGGSVAGPGLKLV 230
Query: 263 IERQLRRARSDSS 275
ERQLRRARSDSS
Sbjct: 231 TERQLRRARSDSS 243
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 233 bits (594), Expect = 2e-61
Identities = 122/171 (71%), Positives = 131/171 (76%), Gaps = 10/171 (5%)
Query: 86 RRPGPGVSAVSAGGQQRAPESQERPAEESA----------PALMPSSAPRGPTEPAFRRP 135
R PGPG + +R ++ERPAE + A MPSSAPRGPTEPA RRP
Sbjct: 45 RPPGPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRP 104
Query: 136 SSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRL 195
SSA+RPLA PSSS GRAP AMASPS SSEATGKPRGRDG PRREEDDVPPEEKRLRL
Sbjct: 105 SSAERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRL 164
Query: 196 LLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRG 246
LLE GSAQP+D EDGEDAPRPGR +TGTQTGGDGRGVSD GAGVRGC+ RG
Sbjct: 165 LLEGGSAQPQDGEDGEDAPRPGRVETGTQTGGDGRGVSDAGAGVRGCRVRG 215
>gi|8393009 chromosome 11 open reading frame2 [Homo sapiens]
Length = 782
Score = 140 bits (352), Expect = 2e-33
Identities = 71/83 (85%), Positives = 74/83 (89%)
Query: 1 MLKLYNGLSEGEAVRLLAGTDPLDPTDLNGAHFNPEVYLDKLPRECPLAQLMDSETDMVQ 60
MLKLY GLSEGEA AG DPLDPTDLNGAHF+PEVYLDKL RECPLAQLMDSETDMV+
Sbjct: 36 MLKLYYGLSEGEAAGRPAGPDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVR 95
Query: 61 QIRALDSDMQTLVYENYDKPPSA 83
QIRALDSDMQTLVYENY+K SA
Sbjct: 96 QIRALDSDMQTLVYENYNKFISA 118
>gi|239749365 PREDICTED: hypothetical protein XP_002347014 [Homo
sapiens]
Length = 190
Score = 106 bits (264), Expect = 3e-23
Identities = 73/152 (48%), Positives = 82/152 (53%), Gaps = 25/152 (16%)
Query: 89 GPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRR-PSSADRPLAPGPS 147
GPG S G Q S R E A GP+ PA+RR A R S
Sbjct: 32 GPGQSGPGHG--QGTATSWARTGESGA----------GPS-PAWRRCAGEASRGRQRARS 78
Query: 148 SSPGAGRAPRAMASPSGSSEATGKP--------RGRDGGPRREEDDVPPEEKRLRLLLER 199
P + R P A + + A + R DG PRREEDDVPPEEKRLRLLLE
Sbjct: 79 GPPKSPRRPDAQLRAARTQRARAQTPQLRREDARAGDGWPRREEDDVPPEEKRLRLLLEG 138
Query: 200 GSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRG 231
GSAQP EDGEDAPRPGR++TGTQTGGDG+G
Sbjct: 139 GSAQP---EDGEDAPRPGREETGTQTGGDGKG 167
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 46.2 bits (108), Expect = 4e-05
Identities = 54/201 (26%), Positives = 73/201 (36%), Gaps = 18/201 (8%)
Query: 80 PPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSAD 139
P + R P +A +A AP P +APA P +A T P PS
Sbjct: 109 PAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP----PSPG- 163
Query: 140 RPLAPGPSSSPGAGRA--PRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLL 197
P PGP + A A P A A+P + G R E +PP
Sbjct: 164 -PAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPP-------- 214
Query: 198 ERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGGSVAGP 257
+ A P+ + P+P + + GG R VS + VR G G GA G G
Sbjct: 215 PQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVS-LREVVRYLGGSG-GAGGRLTRGR 272
Query: 258 GLKLVIERQLRRARSDSSFYG 278
L+ E R R + + G
Sbjct: 273 VQGLLEEEAAARGRLERTRLG 293
Score = 39.3 bits (90), Expect = 0.005
Identities = 47/168 (27%), Positives = 60/168 (35%), Gaps = 28/168 (16%)
Query: 88 PGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAF--RRPSSADRPLAPG 145
P PG + Q+ AP + PA + PA+ P + PR PA R P P P
Sbjct: 160 PSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPA 219
Query: 146 PSSS----------PGAGRAPRA--MASP----------SGSSEATGK-PRGRDGGPRRE 182
P P G A RA A P GS A G+ RGR G E
Sbjct: 220 PPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLTRGRVQGLLEE 279
Query: 183 EDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGR 230
E +R RL A P G P + + ++ GG+ R
Sbjct: 280 EAAARGRLERTRL---GALALPRGDRPGRAPPAASARPSRSKRGGEER 324
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 44.7 bits (104), Expect = 1e-04
Identities = 42/150 (28%), Positives = 57/150 (38%), Gaps = 11/150 (7%)
Query: 86 RRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRR----PSSADRP 141
R G G + + GG+ + S +P + +A PT PA + P SA
Sbjct: 313 RNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSS 372
Query: 142 LAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGS 201
G ++ GAGR R S + PR R RR PP L R S
Sbjct: 373 QGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRG---RRRPRPAPPRGSSRSLSRARSS 429
Query: 202 AQPEDCEDGEDAPRPGRKKTGTQTGGDGRG 231
+ D G AP PG + G++ G G G
Sbjct: 430 S---DSGSGRGAPGPG-PEPGSERGHGGHG 455
Score = 36.2 bits (82), Expect = 0.041
Identities = 35/129 (27%), Positives = 46/129 (35%), Gaps = 21/129 (16%)
Query: 81 PSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMP---------SSAPRGPTEPA 131
PS + G +AGG R + R + A P + PRG +
Sbjct: 364 PSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSL 423
Query: 132 FRRPSSADRPL---APGPSSSPGA-----GRAPRAMASPSGSSEATGKP----RGRDGGP 179
R SS+D APGP PG+ G RA P + A+ P GR GGP
Sbjct: 424 SRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGP 483
Query: 180 RREEDDVPP 188
+ P
Sbjct: 484 EGKSSSRSP 492
Score = 34.7 bits (78), Expect = 0.12
Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 35/180 (19%)
Query: 97 AGGQQRAPESQERPAEESAPA-LMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRA 155
+ G +P ++ +P+ L P G + R SS R +P PS G G
Sbjct: 256 SSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQR--SSGSR--SPSPSGGSGWGSP 311
Query: 156 PRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPR 215
R GS + +G GR G D P R+ + +A P G+++P
Sbjct: 312 QRN----GGSGQRSGAHGGRPGSAHSPPDK--PSSPSPRVRDKAAAAAPTPPARGKESPS 365
Query: 216 PGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGGSVAGPGLKLVIERQLRRARSDSS 275
P + QGRG AAGG+ G + R+ RR+RS +S
Sbjct: 366 PRSAPSS--------------------QGRGGRAAGGA----GRRRRRRRRRRRSRSSAS 401
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 44.3 bits (103), Expect = 2e-04
Identities = 50/173 (28%), Positives = 67/173 (38%), Gaps = 26/173 (15%)
Query: 77 YDKPPSAKCRRPGPGVSAVSAGGQQRAPESQER-PAEESAPALMPSSAPRGPTEPAFRRP 135
+ +PP +P P S GG+ P+SQ P E +APA P GPT P R P
Sbjct: 170 FQRPPVYLGNKPTPPRQEGSFGGR---PKSQPPLPQETAAPAPQP-----GPTAPPARPP 221
Query: 136 SSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKP-----RGRDGG------PRREED 184
+ R G + S G+G A A G + + P GR G PR E
Sbjct: 222 AYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREP 281
Query: 185 DVPPEEKRLRLLLER------GSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRG 231
E + L R GS+QP + R R++ GG+G G
Sbjct: 282 QAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEG 334
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 44.3 bits (103), Expect = 2e-04
Identities = 50/173 (28%), Positives = 67/173 (38%), Gaps = 26/173 (15%)
Query: 77 YDKPPSAKCRRPGPGVSAVSAGGQQRAPESQER-PAEESAPALMPSSAPRGPTEPAFRRP 135
+ +PP +P P S GG+ P+SQ P E +APA P GPT P R P
Sbjct: 170 FQRPPVYLGNKPTPPRQEGSFGGR---PKSQPPLPQETAAPAPQP-----GPTAPPARPP 221
Query: 136 SSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKP-----RGRDGG------PRREED 184
+ R G + S G+G A A G + + P GR G PR E
Sbjct: 222 AYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREP 281
Query: 185 DVPPEEKRLRLLLER------GSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRG 231
E + L R GS+QP + R R++ GG+G G
Sbjct: 282 QAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEG 334
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 44.3 bits (103), Expect = 2e-04
Identities = 50/173 (28%), Positives = 67/173 (38%), Gaps = 26/173 (15%)
Query: 77 YDKPPSAKCRRPGPGVSAVSAGGQQRAPESQER-PAEESAPALMPSSAPRGPTEPAFRRP 135
+ +PP +P P S GG+ P+SQ P E +APA P GPT P R P
Sbjct: 170 FQRPPVYLGNKPTPPRQEGSFGGR---PKSQPPLPQETAAPAPQP-----GPTAPPARPP 221
Query: 136 SSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKP-----RGRDGG------PRREED 184
+ R G + S G+G A A G + + P GR G PR E
Sbjct: 222 AYESREGPRGRAESRGSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREP 281
Query: 185 DVPPEEKRLRLLLER------GSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRG 231
E + L R GS+QP + R R++ GG+G G
Sbjct: 282 QAAEESGCATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGGGEGEG 334
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 44.3 bits (103), Expect = 2e-04
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 80 PPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSAD 139
PP+AK R P G SAG P + +A A P AP GP +PA +A
Sbjct: 121 PPAAKLRPPPEG----SAGSCAPVPAA-------AAVAAGPEPAPAGPAKPAGPAALAAR 169
Query: 140 RPLAPGPSSSPGAGRAPRAMASPSGSSEATG 170
PGP PG G P A P + G
Sbjct: 170 AGPGPGPGPGPGPGPGPGKPAGPGAAQTLNG 200
Score = 38.1 bits (87), Expect = 0.011
Identities = 44/149 (29%), Positives = 53/149 (35%), Gaps = 34/149 (22%)
Query: 117 ALMPSSAPRGP----TEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEAT-GK 171
AL+P P P P F ++ P AP P ++P A AP A P + AT +
Sbjct: 224 ALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAP-APAAPAAAPPPPPPAPATLAR 282
Query: 172 PRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRG 231
P G GP VPP +AQ AP P GG
Sbjct: 283 PPGHPAGPPTAAPAVPPP----------AAAQNGGSAGAAPAPAPA-------AGGP--- 322
Query: 232 VSDVGAGVRGCQGRGVGAAGGSVAGPGLK 260
AGV G G G AA PG+K
Sbjct: 323 -----AGVSGQPGPGAAAA---APAPGVK 343
Score = 37.0 bits (84), Expect = 0.024
Identities = 39/149 (26%), Positives = 53/149 (35%), Gaps = 18/149 (12%)
Query: 123 APRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSE--ATGKPRGRDGGPR 180
APR P A + + ++ P+ + GAG A A +P + E G+ R GGP+
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQ 103
Query: 181 REEDDVPPEEKRLRLLLERGSA-------QPEDCEDGEDAPRPGRKKTGT----QTGGDG 229
R PP + R L+ G A P + G AP P G
Sbjct: 104 RPG---PPSPR--RPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPA 158
Query: 230 RGVSDVGAGVRGCQGRGVGAAGGSVAGPG 258
+ R G G G G GPG
Sbjct: 159 KPAGPAALAARAGPGPGPGPGPGPGPGPG 187
Score = 36.2 bits (82), Expect = 0.041
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 80 PPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSAD 139
PP+A P P A + AP + RP PA P++AP P A + SA
Sbjct: 257 PPAA----PAPAAPAAAPPPPPPAPATLARPPGH--PAGPPTAAPAVPPPAAAQNGGSAG 310
Query: 140 RPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRL 193
AP P++ AG + + G++ A P + P+R PP + L
Sbjct: 311 AAPAPAPAAGGPAGVSGQ---PGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTL 361
Score = 32.3 bits (72), Expect = 0.60
Identities = 27/89 (30%), Positives = 33/89 (37%)
Query: 81 PSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADR 140
P A P PGV A S +A + S PA +S GPT +A
Sbjct: 331 PGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVP 390
Query: 141 PLAPGPSSSPGAGRAPRAMASPSGSSEAT 169
P APG + G A S S + AT
Sbjct: 391 PPAPGTPTGLPKGAAGAVTQSLSRTPTAT 419
Score = 30.8 bits (68), Expect = 1.7
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 20/110 (18%)
Query: 90 PGVSAVSAGGQQRAPESQ--------ERPAEESAPALMPSSAPRGPTEPAFRRPSSADRP 141
P VS V+ G P + + P A A +AP P PA P++A P
Sbjct: 213 PAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPP 272
Query: 142 LAPGPSS----------SPGAGRA--PRAMASPSGSSEATGKPRGRDGGP 179
P P++ P A A P A A GS+ A P GGP
Sbjct: 273 PPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGP 322
Score = 29.3 bits (64), Expect = 5.0
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 12/92 (13%)
Query: 88 PGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPS 147
P P + A AP + P P P++ R P PA P++A P P P+
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPP-----PPPAPATLARPPGHPA-GPPTAA--PAVPPPA 301
Query: 148 SSPGAGRAPRAMASPSGSSEATGKPRGRDGGP 179
++ G A A A + A G P G G P
Sbjct: 302 AAQNGGSAGAAPA----PAPAAGGPAGVSGQP 329
Score = 28.9 bits (63), Expect = 6.6
Identities = 28/115 (24%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 79 KPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPS-- 136
+ P + G + V +G A + E AP P P G P P
Sbjct: 46 RTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRP 105
Query: 137 ---SADRPLAPGPSSSPGA-------GRAPRAMASPSGSSEATGKPRGRDGGPRR 181
S RPL P + P A G A P+ ++ A G P GP +
Sbjct: 106 GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG-PEPAPAGPAK 159
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 44.3 bits (103), Expect = 2e-04
Identities = 70/236 (29%), Positives = 94/236 (39%), Gaps = 38/236 (16%)
Query: 61 QIRALDSDMQTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMP 120
++RA + + + + + + + RR AGG +R+P + RP +AP +
Sbjct: 104 EVRAREQEKRKAASQEREAKETERKRR--------KAGGARRSPPGRPRPEPRNAPRVAQ 155
Query: 121 SSAPRGPTEPAFRRP-SSADRPLAPGPSSSPGAGRAPRAMASPSG-------SSEATGKP 172
+ P P P A RP A P S PG+ A A P G S EA
Sbjct: 156 LAGLPAPLRPERLAPVGRAPRPSAQ-PQSDPGS-----AWAGPWGGRRPGPPSYEAHLLL 209
Query: 173 RGRDG-GPRREEDDVPP-------EEKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTG-T 223
RG G PRR D PP E L +RG + A P R G T
Sbjct: 210 RGSAGTAPRRRWDRPPPYVAPPSYEGPHRTLGTKRGPGNSQVPTSSAPAATPARTDGGRT 269
Query: 224 QTGGDGRGVSDV-GA-GVRGCQGRGVGAAGGSVA----GPGLKLVIERQLRRARSD 273
+ D R DV GA G+R QG G+ G A PG K V+E+ L A +D
Sbjct: 270 KKRLDPRIYRDVLGAWGLRQGQGLLGGSPGCGAARARPEPG-KGVVEKSLGLAAAD 324
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 44.3 bits (103), Expect = 2e-04
Identities = 46/182 (25%), Positives = 67/182 (36%), Gaps = 21/182 (11%)
Query: 79 KPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSA 138
KPP ++P PG G ++ SQ PA+ P + P G T+P ++P +
Sbjct: 303 KPP---IQQPTPGKPPAQQPGHEK---SQPGPAK-------PPAQPSGLTKPLAQQPGTV 349
Query: 139 DRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLE 198
P+ P ++ P A P A P + KP GP+ PP + +
Sbjct: 350 KPPVQPPGTTKPPA--QPLGPAKPPAQQTGSEKPSSEQPGPKALAQ--PPGVGKTP-AQQ 404
Query: 199 RGSAQPEDCEDGEDAP---RPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGGSVA 255
G A+P + G P +PG + G V G G Q G G
Sbjct: 405 PGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQT 464
Query: 256 GP 257
GP
Sbjct: 465 GP 466
Score = 42.4 bits (98), Expect = 6e-04
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 86 RRPGPGVSAVSAGGQQRAPESQERP----AEESAPALMPSSAPRGPTEPAFRRPSSADRP 141
+ PGP + V G + P Q P A+++ P PS P GP +P ++P A P
Sbjct: 432 KAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLP-GPAKPPPQQPGPAKPP 490
Query: 142 -----LAPGPSSSPGAGRAPRAM---ASPSGSSEATGKPRGRDGGPRREEDDVPPEEK 191
A PS PG+ + P A PS + KP + G + P K
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK 548
Score = 40.8 bits (94), Expect = 0.002
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 79 KPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSA 138
KPPS + PGP G + P Q P P+ P S P +P +PS
Sbjct: 468 KPPS---QLPGPAKPPPQQPGPAKPPPQQ--PGSAKPPSQQPGSTKPPPQQPGPAKPSPQ 522
Query: 139 DRPLAPGPSSSPGAGRAPRAMASPS-GSSEATGKPRGRDG-GPRREEDDVPPEEKR 192
PS PG+ + SP+ S++ + KP + G G + V P K+
Sbjct: 523 QPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQ 578
Score = 30.4 bits (67), Expect = 2.3
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 67 SDMQTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRG 126
SD + + +PP A + PGV + + Q+ P S+ S G
Sbjct: 4594 SDSENSQHLELHEPPKAVDKAKSPGVDPKQLAAELQKVSLQQSPLVLSSVVEKGSHVHSG 4653
Query: 127 PTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKP 172
PT S+ P +PG SP + + P+ ++ P
Sbjct: 4654 PTS-----AGSSSVP-SPGQPGSPSVSKKKHGSSKPTDGTKVVSHP 4693
Score = 29.6 bits (65), Expect = 3.9
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 10/120 (8%)
Query: 96 SAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRP--LAPGPSSSPGAG 153
S G Q A + P SA + P E + AD LAP P SP
Sbjct: 3564 SLGCQTEADSDTQSPQYLSATSPPKDKKRPTPLEIGYSSHLRADSTVQLAPSPPKSPKVL 3623
Query: 154 RAPRAMASPSGSSEAT----GKPRGRDGGPRR----EEDDVPPEEKRLRLLLERGSAQPE 205
+P + SP + E+ KP D P++ + VPP + +++R + P+
Sbjct: 3624 YSPISPLSPGKALESAFVPYEKPLPDDISPQKVLHPDMAKVPPASPKTAKMMQRSMSDPK 3683
Score = 28.9 bits (63), Expect = 6.6
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 98 GGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPL-----APGPSSSPGA 152
GG S +P ++AP S+ + +P P P AP P P
Sbjct: 647 GGDLAPVPSSPQPKLKTAPVTTTSAVSKSSPQPQQTSPKKDAAPKQDLSKAPEPKKPPPL 706
Query: 153 GRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKR 192
+ P SPS ++ + +E VP E+ +
Sbjct: 707 VKQPTLHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDK 746
Score = 28.5 bits (62), Expect = 8.6
Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 21/142 (14%)
Query: 70 QTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALM--------PS 121
QT + D P K PG +AG P+ +P E+S + P
Sbjct: 859 QTKMSPKPDAKPMPKGSPTPPGPRP-TAGQTVPTPQQSPKPQEQSRRFSLNLGSITDAPK 917
Query: 122 SAPRGPTEPAFRRP--------SSADRPLA----PGPSSSPGAGRAPRAMASPSGSSEAT 169
S P P E + S A ++ PGP S G G + +PS +
Sbjct: 918 SQPTTPQETVTGKLFGFGASIFSQASNLISTAGQPGPHSQSGPGAPMKQAPAPSQPPTSQ 977
Query: 170 GKPRGRDGGPRREEDDVPPEEK 191
G P+ P +P +++
Sbjct: 978 GPPKSTGQAPPAPAKSIPVKKE 999
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 44.3 bits (103), Expect = 2e-04
Identities = 46/182 (25%), Positives = 67/182 (36%), Gaps = 21/182 (11%)
Query: 79 KPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSA 138
KPP ++P PG G ++ SQ PA+ P + P G T+P ++P +
Sbjct: 303 KPP---IQQPTPGKPPAQQPGHEK---SQPGPAK-------PPAQPSGLTKPLAQQPGTV 349
Query: 139 DRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLE 198
P+ P ++ P A P A P + KP GP+ PP + +
Sbjct: 350 KPPVQPPGTTKPPA--QPLGPAKPPAQQTGSEKPSSEQPGPKALAQ--PPGVGKTP-AQQ 404
Query: 199 RGSAQPEDCEDGEDAP---RPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGGSVA 255
G A+P + G P +PG + G V G G Q G G
Sbjct: 405 PGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQT 464
Query: 256 GP 257
GP
Sbjct: 465 GP 466
Score = 42.4 bits (98), Expect = 6e-04
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 86 RRPGPGVSAVSAGGQQRAPESQERP----AEESAPALMPSSAPRGPTEPAFRRPSSADRP 141
+ PGP + V G + P Q P A+++ P PS P GP +P ++P A P
Sbjct: 432 KAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLP-GPAKPPPQQPGPAKPP 490
Query: 142 -----LAPGPSSSPGAGRAPRAM---ASPSGSSEATGKPRGRDGGPRREEDDVPPEEK 191
A PS PG+ + P A PS + KP + G + P K
Sbjct: 491 PQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAK 548
Score = 40.8 bits (94), Expect = 0.002
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 79 KPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSA 138
KPPS + PGP G + P Q P P+ P S P +P +PS
Sbjct: 468 KPPS---QLPGPAKPPPQQPGPAKPPPQQ--PGSAKPPSQQPGSTKPPPQQPGPAKPSPQ 522
Query: 139 DRPLAPGPSSSPGAGRAPRAMASPS-GSSEATGKPRGRDG-GPRREEDDVPPEEKR 192
PS PG+ + SP+ S++ + KP + G G + V P K+
Sbjct: 523 QPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQ 578
Score = 30.4 bits (67), Expect = 2.3
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 67 SDMQTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRG 126
SD + + +PP A + PGV + + Q+ P S+ S G
Sbjct: 4594 SDSENSQHLELHEPPKAVDKAKSPGVDPKQLAAELQKVSLQQSPLVLSSVVEKGSHVHSG 4653
Query: 127 PTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKP 172
PT S+ P +PG SP + + P+ ++ P
Sbjct: 4654 PTS-----AGSSSVP-SPGQPGSPSVSKKKHGSSKPTDGTKVVSHP 4693
Score = 29.6 bits (65), Expect = 3.9
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 10/120 (8%)
Query: 96 SAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRP--LAPGPSSSPGAG 153
S G Q A + P SA + P E + AD LAP P SP
Sbjct: 3564 SLGCQTEADSDTQSPQYLSATSPPKDKKRPTPLEIGYSSHLRADSTVQLAPSPPKSPKVL 3623
Query: 154 RAPRAMASPSGSSEAT----GKPRGRDGGPRR----EEDDVPPEEKRLRLLLERGSAQPE 205
+P + SP + E+ KP D P++ + VPP + +++R + P+
Sbjct: 3624 YSPISPLSPGKALESAFVPYEKPLPDDISPQKVLHPDMAKVPPASPKTAKMMQRSMSDPK 3683
Score = 28.9 bits (63), Expect = 6.6
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 98 GGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPL-----APGPSSSPGA 152
GG S +P ++AP S+ + +P P P AP P P
Sbjct: 647 GGDLAPVPSSPQPKLKTAPVTTTSAVSKSSPQPQQTSPKKDAAPKQDLSKAPEPKKPPPL 706
Query: 153 GRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKR 192
+ P SPS ++ + +E VP E+ +
Sbjct: 707 VKQPTLHGSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDK 746
Score = 28.5 bits (62), Expect = 8.6
Identities = 32/142 (22%), Positives = 49/142 (34%), Gaps = 21/142 (14%)
Query: 70 QTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALM--------PS 121
QT + D P K PG +AG P+ +P E+S + P
Sbjct: 859 QTKMSPKPDAKPMPKGSPTPPGPRP-TAGQTVPTPQQSPKPQEQSRRFSLNLGSITDAPK 917
Query: 122 SAPRGPTEPAFRRP--------SSADRPLA----PGPSSSPGAGRAPRAMASPSGSSEAT 169
S P P E + S A ++ PGP S G G + +PS +
Sbjct: 918 SQPTTPQETVTGKLFGFGASIFSQASNLISTAGQPGPHSQSGPGAPMKQAPAPSQPPTSQ 977
Query: 170 GKPRGRDGGPRREEDDVPPEEK 191
G P+ P +P +++
Sbjct: 978 GPPKSTGQAPPAPAKSIPVKKE 999
>gi|239742249 PREDICTED: hypothetical protein XP_002342465 [Homo
sapiens]
Length = 179
Score = 43.5 bits (101), Expect = 3e-04
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 89 GPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPSS 148
G +A + GG Q AP +Q + + + APRGPT+P RR + P
Sbjct: 66 GCATAAPAHGGWQWAPLAQGQLSHRPS-GTDRKVAPRGPTQPPARRGNHL------RPPQ 118
Query: 149 SPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREE 183
SPGA RA SG + G PR GGP R E
Sbjct: 119 SPGASRAQEPKFPASGHQHSPGCPRA--GGPLRGE 151
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 43.5 bits (101), Expect = 3e-04
Identities = 37/136 (27%), Positives = 50/136 (36%), Gaps = 19/136 (13%)
Query: 100 QQRAPESQERPAEESAPALMPSSAPRGPTEPAF---RRPSSADRPLAPGPSSSPGAGRAP 156
Q AP +Q P P P +PR EP R ++ D P P+ G+A
Sbjct: 1087 QTTAPGAQPEPTRTFLPGEPPPCSPRSLEEPGLLSGAREATQDLAATPYPTERGPQGKAA 1146
Query: 157 R------------AMASPSGSSEATGKPRGRDGGPR----REEDDVPPEEKRLRLLLERG 200
A +G EATG+ GG R REE + P +LE+
Sbjct: 1147 DPSPLEGLQELQCAALLEAGGPEATGQAHSTQGGAREERSREEGEQGPSSGASSQVLEQR 1206
Query: 201 SAQPEDCEDGEDAPRP 216
+ P ED + P P
Sbjct: 1207 AGSPGALEDEGEQPAP 1222
Score = 35.4 bits (80), Expect = 0.070
Identities = 49/164 (29%), Positives = 63/164 (38%), Gaps = 47/164 (28%)
Query: 101 QRAPESQ----ERPAEESAP-------ALMPS-----SAPRGPT-----------EPAFR 133
QR PE Q E PA+E AP AL P+ S GPT +P
Sbjct: 945 QRKPEDQHLDLEEPAQEKAPKSTHKPVALTPTAPGAPSPAAGPTKLPPCCHPPDPKPPAS 1004
Query: 134 RPSSADRPLAP-----GPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPP 188
P+ RP AP P+SSPG G R+ + E G+ + E D+PP
Sbjct: 1005 SPTPPPRPSAPCTLNVCPASSPGPGSRVRS------AEEKNGEGQQSTADIITSEPDLPP 1058
Query: 189 EEKRLRLLLERGSAQPED-----CEDGE--DAPRPGRKKTGTQT 225
LR + G + P D ED E PG + T+T
Sbjct: 1059 --GYLRPMAGLGFSLPSDVHSSNLEDPETMQTTAPGAQPEPTRT 1100
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 43.1 bits (100), Expect = 3e-04
Identities = 54/180 (30%), Positives = 71/180 (39%), Gaps = 17/180 (9%)
Query: 88 PGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPS 147
PGP +AG + +A E + R P S P GP PA R P APGPS
Sbjct: 1364 PGPKGDPGAAGQKGQAGE-KGRAGMPGGPGKSGSMGPVGPPGPAGER----GHPGAPGPS 1418
Query: 148 SSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDC 207
SPG P +M E K R + ++ + R++ +E +A
Sbjct: 1419 GSPGLPGVPGSMGDMVNYDEI--KRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPG 1476
Query: 208 EDGED-AP-RPGRKKTGTQTGGDGRGVSDVGAGVRGCQGR-------GVGAAG-GSVAGP 257
G+D AP RPG + G GR GVRG G G+G AG + GP
Sbjct: 1477 PPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGP 1536
Score = 32.3 bits (72), Expect = 0.60
Identities = 48/185 (25%), Positives = 61/185 (32%), Gaps = 30/185 (16%)
Query: 88 PGPGVSAVSAG-----GQQRAPESQERPAEESAPALMPSSAPRGPT-EPAFRRPSS-ADR 140
PGP AG G+ P + P P LM +G T P P +
Sbjct: 1203 PGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGK 1262
Query: 141 PLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEE------KRLR 194
P PG + PGA P AM P+GR G P PP + +
Sbjct: 1263 PGPPGSTGRPGAEGEPGAMG-----------PQGRPGPPGHVGPPGPPGQPGPAGISAVG 1311
Query: 195 LLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGR-GVGAAGGS 253
L +RG+ A PG+ G G +D AG G G+ G G
Sbjct: 1312 LKGDRGATGERGL-----AGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGP 1366
Query: 254 VAGPG 258
PG
Sbjct: 1367 KGDPG 1371
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 43.1 bits (100), Expect = 3e-04
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 105 ESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGP----SSSPGAGRAPRAMA 160
ES++ A P++ PS+ P ++ SS P A GP +SP AP + +
Sbjct: 525 ESEDEAAGPGVPSVWPSALPSLSSDSDSDSDSSLGFPEAQGPPKRLKASPPPSPAPSSSS 584
Query: 161 SPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKK 220
S S S+ + G + + D P E+ LR+ E S + ED G A +P +++
Sbjct: 585 SSSSSTSSAGADVDYSALEKEVDFDSDPMEECLRIFNESTSVKTED--RGRLARQPPKEE 642
Query: 221 TGTQTGGDG 229
+ G G
Sbjct: 643 KSEEKGLSG 651
Score = 35.0 bits (79), Expect = 0.092
Identities = 45/201 (22%), Positives = 64/201 (31%), Gaps = 5/201 (2%)
Query: 79 KPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFR-RPSS 137
+PP AK P S+ G + +++ AP+ + + T+ R RP
Sbjct: 350 QPPPAKPASPAQVQSSQDGGCPKEGKPKKKKTGAPPAPSCKDGAQGKDKTKDKGRGRPVE 409
Query: 138 ADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLL 197
R GP +S +A R + S AT G P R P R
Sbjct: 410 KPRADKKGPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAA 469
Query: 198 ERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAG----GS 253
RG +P D + P K + G S ++ G
Sbjct: 470 GRGPPRPLQLPDRKSTKAPSGKLVERKARSLDEGASQDAPKLKKRALSHADLFGDESEDE 529
Query: 254 VAGPGLKLVIERQLRRARSDS 274
AGPG+ V L SDS
Sbjct: 530 AAGPGVPSVWPSALPSLSSDS 550
Score = 32.0 bits (71), Expect = 0.78
Identities = 35/113 (30%), Positives = 41/113 (36%), Gaps = 25/113 (22%)
Query: 100 QQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLA----PGPSS--SPGAG 153
+QR E A P+ APRGP P PLA PG SP AG
Sbjct: 105 EQRRYRELLETTREHRSAEAPALAPRGPNASPTVGPDEDAFPLAFDYSPGSHGLLSPDAG 164
Query: 154 RAPRAMASP-------SGSSEATGKPRGRDGG------------PRREEDDVP 187
P +A+P S +S G+ RG GG PRR VP
Sbjct: 165 YQPTPLAAPAEPGSKYSLASLDRGQGRGGGGGGALEYVPKAVSQPRRHSRPVP 217
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 43.1 bits (100), Expect = 3e-04
Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 35/163 (21%)
Query: 81 PSAKCRRPGPGVSAVSAGGQQR----------APESQERPAEESAPALMPSSA---PRGP 127
P RR G + VSAGG PE+ E+ E P P +A P P
Sbjct: 1670 PPVPVRRSGQAKNPVSAGGSSAPPPKAPAPPPKPETPEKTTSEKPPEQTPETAMPEPPAP 1729
Query: 128 TEPAFRRP----------SSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDG 177
+P+ RP + +RPL ++S R R++A +G + P+ R
Sbjct: 1730 EKPSLLRPVEKEKEKEKVTRGERPLRGERATSGRQTRPERSLA--TGQPATSRLPKARPT 1787
Query: 178 GPRREEDDVPPEEKRLRLLLE------RGSAQPEDCEDGEDAP 214
+ E PP +KR + L E G P D E +P
Sbjct: 1788 KVKAE----PPPKKRKKWLKEAGGNATAGGGPPGSSSDSESSP 1826
Score = 38.9 bits (89), Expect = 0.006
Identities = 48/175 (27%), Positives = 59/175 (33%), Gaps = 30/175 (17%)
Query: 78 DKPPSAKCRR-----PGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAF 132
D PP A P PG+ + ++ G P +E+P PA P P P P
Sbjct: 1420 DGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQ 1479
Query: 133 RRPSSADRPLAPGPSSSPG---AGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPE 189
S +AP PSS P P AM SP P PPE
Sbjct: 1480 PALPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLA-----------APPE 1528
Query: 190 EKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQG 244
E + PED E + P KK T G +D AG G +G
Sbjct: 1529 EP--------AAPSPEDPELPDTRPLHLAKKQETAA---VCGETDEEAGESGGEG 1572
Score = 32.7 bits (73), Expect = 0.46
Identities = 50/173 (28%), Positives = 62/173 (35%), Gaps = 35/173 (20%)
Query: 94 AVSAGGQQRAPESQERPAEESAPALM-PSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGA 152
A+S G P S E S ++ P +P PA RP P APG S
Sbjct: 540 ALSGHGGGWGPSSLGGGGEASPSHIIRPLQSP-----PATGRPPGVGSPGAPGKYLSSVL 594
Query: 153 GRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDCEDGE- 211
AP +A P S A G GG + + D LL G E ED E
Sbjct: 595 ASAP-FLAPPGAGSYAAGA-----GGYKGKGDG-------SELLAGPGGPPAERTEDEEF 641
Query: 212 ------DAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGGSVAGPG 258
AP P R +G DG VG +G+G +GG+ PG
Sbjct: 642 LIQHLLQAPSPPR-----TSGADGL----VGEDGAADASKGLGGSGGAGGPPG 685
Score = 30.0 bits (66), Expect = 3.0
Identities = 54/242 (22%), Positives = 73/242 (30%), Gaps = 67/242 (27%)
Query: 81 PSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPS---- 136
P++ RP P S++S +P + + L PS AP P+ F R +
Sbjct: 154 PASFGSRPFPVPSSLSLQDPPFSPPANGLLSPHDVLHLKPSQAPTVPSSLGFERLAGGGV 213
Query: 137 --------SADRPLAPGPSSSP----------------GAGRAPRAMASP---SGSSEAT 169
+ P PGP P A A +SP + S A
Sbjct: 214 LGPAGLGPAQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAP 273
Query: 170 GKPRGRDGGPRR-------------EEDDVPPEEKRLRLLLERGSAQP----------ED 206
G P PR+ + PP L+ L G + P
Sbjct: 274 GPPPPERALPRQDTVIKHYQRPASAQPPPPPPPAHALQHYLSCGGSYPSMGHRANLACSP 333
Query: 207 CEDGEDAPRPGRKK----TGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGGS----VAGPG 258
GE +P G +G G GR AG G G G GG + PG
Sbjct: 334 LGGGEPSPGAGEPSKAGPSGATAGASGRATGPEAAG-----GGGAGGGGGGYRPIIQSPG 388
Query: 259 LK 260
K
Sbjct: 389 YK 390
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 42.7 bits (99), Expect = 4e-04
Identities = 39/103 (37%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 86 RRPGPGVS-----AVSAGGQQRA---PESQERPAEESAPALMPSSAPRGPTEPAFRRPSS 137
RRP PG + A S RA PES S PAL+PS P P RP
Sbjct: 110 RRPEPGGARSRPVAASPAASSRARSRPESSPGAPGSSVPALLPSLPPLAAPRPLSARPRL 169
Query: 138 ADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPR 180
RP P P + G PR A P+G S +PRG GPR
Sbjct: 170 --RPPQPQPLALT-VGNGPR--APPAGGSR---QPRGSVRGPR 204
Score = 35.0 bits (79), Expect = 0.092
Identities = 37/136 (27%), Positives = 46/136 (33%), Gaps = 22/136 (16%)
Query: 130 PAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPE 189
PA + S A+RP P PG R+ ASP+ SS A +P G P + P
Sbjct: 98 PAGQCLSEAERPRRP----EPGGARSRPVAASPAASSRARSRPESSPGAPGSSVPALLPS 153
Query: 190 EKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGA 249
L APRP + + VG G R G
Sbjct: 154 LPPLA------------------APRPLSARPRLRPPQPQPLALTVGNGPRAPPAGGSRQ 195
Query: 250 AGGSVAGPGLKLVIER 265
GSV GP + ER
Sbjct: 196 PRGSVRGPRARAAEER 211
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 42.7 bits (99), Expect = 4e-04
Identities = 52/184 (28%), Positives = 65/184 (35%), Gaps = 32/184 (17%)
Query: 76 NYDKPP-SAKCRRPGPGVSAVSAGGQQRAPESQERPAEES-----APALMPSSAPRGPTE 129
N ++PP + R PGP + G AP E E S AP+ + SS G T
Sbjct: 1043 NTERPPETGPWRAPGPWEKTPESWGP--APTIGEPAPETSLERAPAPSAVVSSRNGGETA 1100
Query: 130 PAFRRPSSADRPLAPGPSS-SPGAGRAPRAMASP-----SGSSEATGKPRGRDGGPRREE 183
P P+ + L PG +P G APRA + SG G GGP
Sbjct: 1101 PGPLGPAPKNGTLEPGTERRAPETGGAPRAPGAGRLDLGSGGRAPVGTGTAPGGGPGSGV 1160
Query: 184 D------------------DVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKKTGTQT 225
D PPE + RL A+PE +GE R T
Sbjct: 1161 DAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPEVAPEGEPGAPDSRAGGDTAL 1220
Query: 226 GGDG 229
GDG
Sbjct: 1221 SGDG 1224
Score = 37.4 bits (85), Expect = 0.019
Identities = 47/177 (26%), Positives = 56/177 (31%), Gaps = 42/177 (23%)
Query: 88 PGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPS 147
P VS G R P + ERP E P AP GP E A P P
Sbjct: 1025 PPKSEDKVSENGGLRFPRNTERPPETG-----PWRAP-GPWEKTPESWGPAPTIGEPAPE 1078
Query: 148 SSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDC 207
+S AP A+ S E P G P K L
Sbjct: 1079 TSLERAPAPSAVVSSRNGGETAPGPLG-------------PAPKNGTL------------ 1113
Query: 208 EDGEDAPRPGRKKTGTQTGG----DGRGVSDVGAGVRGCQGRGVGAAGGSVAGPGLK 260
PG ++ +TGG G G D+G+G R G G GG +G K
Sbjct: 1114 -------EPGTERRAPETGGAPRAPGAGRLDLGSGGRAPVGTGTAPGGGPGSGVDAK 1163
Score = 37.4 bits (85), Expect = 0.019
Identities = 52/200 (26%), Positives = 71/200 (35%), Gaps = 22/200 (11%)
Query: 81 PSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADR 140
P A R G G +A+S G P ER E + P+G +E R S
Sbjct: 1207 PGAPDSRAG-GDTALSGDGD---PPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRLSL 1262
Query: 141 PLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERG 200
L P + +P G PR + A G G G P E+D G
Sbjct: 1263 ALPP-LTLTPFPGPGPRRPPWEGADAGAAGGEAGGAGAPGPAEED--------------G 1307
Query: 201 SAQPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGGSVAGP-GL 259
+ ED E+ E+A PG G + G R + V V G + P G
Sbjct: 1308 EDEDEDEEEDEEAAAPG-AAAGPRGPGRAR-AAPVPVVVSSADADAARPLRGLLKSPRGA 1365
Query: 260 KLVIERQLRRARSDSSFYGN 279
+ +L R R SF+G+
Sbjct: 1366 DEPEDSELERKRKMVSFHGD 1385
Score = 33.5 bits (75), Expect = 0.27
Identities = 34/104 (32%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 116 PALMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAG-RAPRAMASPSG-SSEATGKPR 173
P P AP P P A P P +SPG+G +P SG +E P
Sbjct: 774 PGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSPE 833
Query: 174 GR-DGGPRREEDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRP 216
G GG EE+ VP R A PE + G APRP
Sbjct: 834 GAFPGGGAAEEEGVP-----------RPRAPPEPPDPG--APRP 864
>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
Length = 609
Score = 42.7 bits (99), Expect = 4e-04
Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 78 DKPPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSS 137
D PP + RRPGPG + SA P++ A E P + P GP A P
Sbjct: 477 DSPPGSPRRRPGPGPRSASA---SLLPDAFALTAFECEPQAL--RRPPGPFPAAPAAPDG 531
Query: 138 ADRPLAPGPSSSPGAGRAPRAMA-SPSGS-----SEATGKPRG 174
AD AP P SS PR A S +GS S + G+P G
Sbjct: 532 ADPGEAPTPPSSAQRSPGPRPSAHSHAGSLRPGLSASWGEPGG 574
Score = 31.2 bits (69), Expect = 1.3
Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 22/147 (14%)
Query: 93 SAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGA 152
+++ A + P R + ES +L PS+ GP P S R PGP S+ +
Sbjct: 438 ASLLAFAEDAPPSRARRRSAESLLSLRPSALDSGPRGARDSPPGSPRRRPGPGPRSASAS 497
Query: 153 -----------GRAPRAMASPSGS-SEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERG 200
P+A+ P G A P G D G E PP +R
Sbjct: 498 LLPDAFALTAFECEPQALRRPPGPFPAAPAAPDGADPG----EAPTPPSS------AQRS 547
Query: 201 SAQPEDCEDGEDAPRPGRKKTGTQTGG 227
+ RPG + + GG
Sbjct: 548 PGPRPSAHSHAGSLRPGLSASWGEPGG 574
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 42.4 bits (98), Expect = 6e-04
Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 104 PESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPS 163
P S + E A +PS P PA P P P G GR PRA A
Sbjct: 157 PPSSPKARMERASRKLPSRVNSRPPHPA---------PTRPTPRVQGGFGREPRAAAGQG 207
Query: 164 GSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPED 206
+ R +D GPRR PP LR RGS +P D
Sbjct: 208 RGWLPPCRLRLQDSGPRRRPGPGPP---ALRSGRSRGSGRPPD 247
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 42.4 bits (98), Expect = 6e-04
Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 104 PESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPS 163
P S + E A +PS P PA P P P G GR PRA A
Sbjct: 157 PPSSPKARMERASRKLPSRVNSRPPHPA---------PTRPTPRVQGGFGREPRAAAGQG 207
Query: 164 GSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPED 206
+ R +D GPRR PP LR RGS +P D
Sbjct: 208 RGWLPPCRLRLQDSGPRRRPGPGPP---ALRSGRSRGSGRPPD 247
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 42.4 bits (98), Expect = 6e-04
Identities = 34/103 (33%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 104 PESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPS 163
P S + E A +PS P PA P P P G GR PRA A
Sbjct: 157 PPSSPKARMERASRKLPSRVNSRPPHPA---------PTRPTPRVQGGFGREPRAAAGQG 207
Query: 164 GSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPED 206
+ R +D GPRR PP LR RGS +P D
Sbjct: 208 RGWLPPCRLRLQDSGPRRRPGPGPP---ALRSGRSRGSGRPPD 247
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 42.4 bits (98), Expect = 6e-04
Identities = 42/167 (25%), Positives = 62/167 (37%), Gaps = 29/167 (17%)
Query: 102 RAPESQERPAEESA--PALMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAM 159
RAP + R + + P + AP P PA +R + + +AP+A
Sbjct: 147 RAPRGRGRKHKTTPLPPPRLADVAPTPPKTPARKRGEEGTERMVQALTELLRRAQAPQAP 206
Query: 160 AS----PSGSSEATGKPRGRDGGPRREEDD----------VPPEEKRLRLLLERGSAQPE 205
S PS + G+P GR GP R + +P E ++ +
Sbjct: 207 RSRACEPSTPRRSRGRPPGRPAGPCRRKQQAVVVAEAAVTIPKPEPPPPVVPVKHQTGSW 266
Query: 206 DCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGG 252
C++G P PG + G Q+ GRG GRG G GG
Sbjct: 267 KCKEG-PGPGPGTPRRGGQSSRGGRG------------GRGRGRGGG 300
Score = 40.8 bits (94), Expect = 0.002
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 17/110 (15%)
Query: 80 PPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSAD 139
PP C P P VS P +E+ EES P ++P++ R P
Sbjct: 424 PPPPLCPPPPPPVSPPPLPSPPPPPAQEEQ--EESPPPVVPATCSRKRGRP--------- 472
Query: 140 RPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPE 189
PL P + A RA P G+S T P GGP + V P+
Sbjct: 473 -PLTPSQRAEREAARA-----GPEGTSPPTPTPSTATGGPPEDSPTVAPK 516
Score = 34.3 bits (77), Expect = 0.16
Identities = 40/131 (30%), Positives = 49/131 (37%), Gaps = 15/131 (11%)
Query: 143 APGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSA 202
A G S PG G S G+PRG GG R E R+ L G+
Sbjct: 4 AAGGGSCPGPG---------SARGRFPGRPRGAGGGGGRGGRGNGAERVRVALRRGGGAT 54
Query: 203 QPEDCEDGEDAPRPGRKKTGTQTGGDGRGVSDVGAGVRGCQGRGVGAAGGSVAGPGLKLV 262
P E GED + G + G R + + AG R +GRG G G GP V
Sbjct: 55 GPGGAEPGEDTAL--LRLLGLRRG--LRRLRRLWAGPRVQRGRGRGRGRG--WGPSRGCV 108
Query: 263 IERQLRRARSD 273
E + SD
Sbjct: 109 PEEESSDGESD 119
Score = 29.3 bits (64), Expect = 5.0
Identities = 30/109 (27%), Positives = 38/109 (34%), Gaps = 17/109 (15%)
Query: 91 GVSAVSAGGQQRAPESQERPAEE---------SAPALMPSSAPRGPTEPAFRRPSSADRP 141
G S GG + E + P SAP L PS+ P P R D
Sbjct: 2011 GAMGSSHGGPGDSSEEESSPTSRYIHFPVTVVSAPGLAPSATPGAP------RIEQLD-G 2063
Query: 142 LAPGPSSSPGAGRAPRAMAS-PSGSSEATGKPRGRDGGPRREEDDVPPE 189
+ G S A + PR + PSG G G R +D+P E
Sbjct: 2064 VDDGTDSEAEAVQQPRGQGTPPSGPGVVRAGVLGAAGDRARPPEDLPSE 2112
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.4 bits (98), Expect = 6e-04
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 21/146 (14%)
Query: 80 PPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSAD 139
PP +PGPG Q++ P Q+RP + L P G P R PS
Sbjct: 462 PPQGGPPQPGPGP-------QRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQ-RLPSPTS 513
Query: 140 RPLAPGPSSSP---GAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLL 196
P P ++P G GR R +A G+ A P P + PP+ R +
Sbjct: 514 APQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPP----ASPSPQRQAGPPQATRQTSV 569
Query: 197 LERGSAQPEDCEDGEDAPRPGRKKTG 222
G A P+ AP G+++ G
Sbjct: 570 --SGPAPPK----ASGAPPGGQQRQG 589
Score = 31.2 bits (69), Expect = 1.3
Identities = 38/161 (23%), Positives = 51/161 (31%), Gaps = 28/161 (17%)
Query: 43 PRECPLAQLMDSETDMVQQIRALDSDMQTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQR 102
P PL Q + S T QQ + + P + R+ P A R
Sbjct: 499 PAGSPLPQRLPSPTSAPQQPASQAAP-----------PTQGQGRQSRPVAGGPGAPPAAR 547
Query: 103 APESQERPAEESAPALMPSSAPRGPTEP-AFRRPSSADRPLAPGPSSSPGAGRAPRAMAS 161
P S + P ++ GP P A P + GP P P AS
Sbjct: 548 PPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQ--RQGPPQKPPGPAGPTRQAS 605
Query: 162 PSGSSEATGKP---RGRDGGP-----------RREEDDVPP 188
+G TG P + R GP ++ DVPP
Sbjct: 606 QAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPP 646
Score = 29.6 bits (65), Expect = 3.9
Identities = 33/138 (23%), Positives = 43/138 (31%), Gaps = 14/138 (10%)
Query: 101 QRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMA 160
Q P ++R A P G T PS PL S P AG +
Sbjct: 416 QALPRQRQRDAS-------PGRGSHGQT------PSPGALPLGRQTSQQP-AGPPAQQRP 461
Query: 161 SPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKK 220
P G G R G P ++ ++ L GS P+ AP+ +
Sbjct: 462 PPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQ 521
Query: 221 TGTQTGGDGRGVSDVGAG 238
T G GR V G
Sbjct: 522 AAPPTQGQGRQSRPVAGG 539
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 42.4 bits (98), Expect = 6e-04
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 21/146 (14%)
Query: 80 PPSAKCRRPGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSAD 139
PP +PGPG Q++ P Q+RP + L P G P R PS
Sbjct: 462 PPQGGPPQPGPGP-------QRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQ-RLPSPTS 513
Query: 140 RPLAPGPSSSP---GAGRAPRAMASPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLL 196
P P ++P G GR R +A G+ A P P + PP+ R +
Sbjct: 514 APQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPP----ASPSPQRQAGPPQATRQTSV 569
Query: 197 LERGSAQPEDCEDGEDAPRPGRKKTG 222
G A P+ AP G+++ G
Sbjct: 570 --SGPAPPK----ASGAPPGGQQRQG 589
Score = 31.2 bits (69), Expect = 1.3
Identities = 38/161 (23%), Positives = 51/161 (31%), Gaps = 28/161 (17%)
Query: 43 PRECPLAQLMDSETDMVQQIRALDSDMQTLVYENYDKPPSAKCRRPGPGVSAVSAGGQQR 102
P PL Q + S T QQ + + P + R+ P A R
Sbjct: 499 PAGSPLPQRLPSPTSAPQQPASQAAP-----------PTQGQGRQSRPVAGGPGAPPAAR 547
Query: 103 APESQERPAEESAPALMPSSAPRGPTEP-AFRRPSSADRPLAPGPSSSPGAGRAPRAMAS 161
P S + P ++ GP P A P + GP P P AS
Sbjct: 548 PPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQ--RQGPPQKPPGPAGPTRQAS 605
Query: 162 PSGSSEATGKP---RGRDGGP-----------RREEDDVPP 188
+G TG P + R GP ++ DVPP
Sbjct: 606 QAGPVPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPP 646
Score = 29.6 bits (65), Expect = 3.9
Identities = 33/138 (23%), Positives = 43/138 (31%), Gaps = 14/138 (10%)
Query: 101 QRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMA 160
Q P ++R A P G T PS PL S P AG +
Sbjct: 416 QALPRQRQRDAS-------PGRGSHGQT------PSPGALPLGRQTSQQP-AGPPAQQRP 461
Query: 161 SPSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPEDCEDGEDAPRPGRKK 220
P G G R G P ++ ++ L GS P+ AP+ +
Sbjct: 462 PPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQ 521
Query: 221 TGTQTGGDGRGVSDVGAG 238
T G GR V G
Sbjct: 522 AAPPTQGQGRQSRPVAGG 539
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.4 bits (98), Expect = 6e-04
Identities = 50/176 (28%), Positives = 65/176 (36%), Gaps = 24/176 (13%)
Query: 88 PGPGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSADRPL-APGP 146
P P + QQ+ P Q+ P ++ P P + P + +P+ A GP
Sbjct: 56 PKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGP 115
Query: 147 SSSPGAGRAPRAMAS-PSGSSEATGKPRGRDGGPRREEDDVPPEEKRLRLLLERGSAQPE 205
+PG G AP A +S P + +G P G GP PP SA P
Sbjct: 116 GPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGP----TPTPPPAVT--------SAPP- 162
Query: 206 DCEDGEDAPRP---GRKKTGTQTGGDGRGVSDV-GAGVRGCQGRGVGA-AGGSVAG 256
G P P G T Q GG + V G G QG G G GG + G
Sbjct: 163 ----GAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPG 214
Score = 32.0 bits (71), Expect = 0.78
Identities = 31/111 (27%), Positives = 40/111 (36%), Gaps = 16/111 (14%)
Query: 80 PPSAKCRRPG-PGVSAVSAGGQQRAPESQERPAEESAPALMPSSAPRGPTEPAFRRPSSA 138
PP+ PG P + S+G P++ P PA +P P P P
Sbjct: 154 PPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPP---PAAVPGPGPGPKQGPGPGGPKGG 210
Query: 139 DRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDGG-PRREEDDVPP 188
P P P PG +++P G KP R GG PR PP
Sbjct: 211 KMPGGPKPGGGPG-------LSTPGGHP----KPPHRGGGEPRGGRQHHPP 250
Score = 31.2 bits (69), Expect = 1.3
Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 17/120 (14%)
Query: 75 ENYDKPPSAKCRRPGPGVS----AVSAGGQQRAPESQERPAEESAPALMP----SSAPRG 126
++ KP A+ P PGV A S+ P S P P P +SAP G
Sbjct: 104 QDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPG 163
Query: 127 ---PTEPAFRRPSSADR------PLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDG 177
PT P+ P++ + P A P PG + P G KP G G
Sbjct: 164 APPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPG 223
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,860,339
Number of Sequences: 37866
Number of extensions: 1108927
Number of successful extensions: 11660
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 1392
Number of HSP's that attempted gapping in prelim test: 7796
Number of HSP's gapped (non-prelim): 4495
length of query: 329
length of database: 18,247,518
effective HSP length: 103
effective length of query: 226
effective length of database: 14,347,320
effective search space: 3242494320
effective search space used: 3242494320
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.