Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239742100

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239742100 PREDICTED: hypothetical protein XP_002342435 [Homo
sapiens]
         (224 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753623 PREDICTED: hypothetical protein [Homo sapiens]           461   e-130
gi|239748202 PREDICTED: hypothetical protein XP_002346594 [Homo ...   461   e-130
gi|239742100 PREDICTED: hypothetical protein XP_002342435 [Homo ...   461   e-130
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]       37   0.018
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]       37   0.018
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]            36   0.023
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ...    36   0.023
gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens]           35   0.040
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]            35   0.040
gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens]            35   0.040
gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens]            35   0.040
gi|57222570 codanin 1 [Homo sapiens]                                   35   0.052
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]            35   0.068
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ...    35   0.068
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ...    35   0.068
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          34   0.089
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s...    34   0.12 
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa...    34   0.12 
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s...    34   0.12 
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             34   0.12 
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           33   0.15 
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               33   0.15 
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap...    33   0.15 
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    33   0.20 
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ...    33   0.20 
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    33   0.20 
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]       33   0.20 
gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo ...    33   0.26 
gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo ...    33   0.26 
gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo ...    33   0.26 

>gi|239753623 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score =  461 bits (1187), Expect = e-130
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60
           MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE
Sbjct: 1   MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60

Query: 61  EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120
           EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA
Sbjct: 61  EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120

Query: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180
           VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR
Sbjct: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180

Query: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
           KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC
Sbjct: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224


>gi|239748202 PREDICTED: hypothetical protein XP_002346594 [Homo
           sapiens]
          Length = 224

 Score =  461 bits (1187), Expect = e-130
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60
           MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE
Sbjct: 1   MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60

Query: 61  EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120
           EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA
Sbjct: 61  EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120

Query: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180
           VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR
Sbjct: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180

Query: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
           KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC
Sbjct: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224


>gi|239742100 PREDICTED: hypothetical protein XP_002342435 [Homo
           sapiens]
          Length = 224

 Score =  461 bits (1187), Expect = e-130
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60
           MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE
Sbjct: 1   MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60

Query: 61  EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120
           EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA
Sbjct: 61  EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120

Query: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180
           VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR
Sbjct: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180

Query: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
           KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC
Sbjct: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224


>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
          Length = 654

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 126 IGAPGSVEGVAARCR--GLPG--GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARK 181
           IGAPG + G+  +    GLPG  G   +PG +   EPG++ E+ +   A   G +    +
Sbjct: 248 IGAPG-IPGMNGQKGEPGLPGAVGQNGIPGPKG--EPGEQGEKGD---AGENGPKGDTGE 301

Query: 182 RSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
           +  PG  A+  +  P     PG   + E  +PG P  PG+
Sbjct: 302 KGDPGSSAAGIKGEPGESGRPGQ--KGEPGLPGLPGLPGI 339


>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
          Length = 642

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 126 IGAPGSVEGVAARCR--GLPG--GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARK 181
           IGAPG + G+  +    GLPG  G   +PG +   EPG++ E+ +   A   G +    +
Sbjct: 248 IGAPG-IPGMNGQKGEPGLPGAVGQNGIPGPKG--EPGEQGEKGD---AGENGPKGDTGE 301

Query: 182 RSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
           +  PG  A+  +  P     PG   + E  +PG P  PG+
Sbjct: 302 KGDPGSSAAGIKGEPGESGRPGQ--KGEPGLPGLPGLPGI 339


>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 382

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 118 HPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRA 177
           H    ++  G    V+  A R    PG   R P R     P QR+   +P        R 
Sbjct: 32  HAQRHVVHRGDAARVDAAALRAAARPGPLGRPPTRAG---PAQRSSCTQPHR-----RRR 83

Query: 178 RARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
           R  +R  P    +      +PG G   R RA RV P  P R GL
Sbjct: 84  RGTRRLPPALTPAGPYHSARPGGG--ARARAARVSPPTPPRSGL 125


>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
           sapiens]
          Length = 382

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 10/104 (9%)

Query: 118 HPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRA 177
           H    ++  G    V+  A R    PG   R P R     P QR+   +P        R 
Sbjct: 32  HAQRHVVHRGDAARVDAAALRAAARPGPLGRPPTRAG---PAQRSSCTQPHR-----RRR 83

Query: 178 RARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
           R  +R  P    +      +PG G   R RA RV P  P R GL
Sbjct: 84  RGTRRLPPALTPAGPYHSARPGGG--ARARAARVSPPTPPRSGL 125


>gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens]
          Length = 320

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 17/115 (14%)

Query: 110 DVLGAEVHHPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQA 169
           D+L A+   PAVD  E+  P        R    PG    VP   R + P  +A  R  + 
Sbjct: 200 DLLSADSGLPAVDQGEVAGPRLQPAQPLR----PGA---VPSASRARAPDTKAGTR-ARD 251

Query: 170 AAHGGHRARARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
            A G  + RA    H G G +    L  P   P         +P E +  GLA+C
Sbjct: 252 PAPGASQLRAAHSPHRGGGGAPRTQLAAPPRPP---------LPQENAAAGLASC 297


>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 301

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 15/102 (14%)

Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQRE--------PQAAAHGGHRAR 178
           GAP      A + RG   G   +  R R Q+ G+  E R         P    +G  RA 
Sbjct: 82  GAPARTRAHAHKGRG--AGKLVIQARTRAQKGGKGEETRRGPAPAGLTPSVCLYG--RAP 137

Query: 179 ARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
              R+ PG  A   R  P+ G G  V   AER    +PS  G
Sbjct: 138 TASRTGPGAPAEGARAAPREGGGEAV---AERCARSQPSWEG 176


>gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens]
          Length = 320

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 17/115 (14%)

Query: 110 DVLGAEVHHPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQA 169
           D+L A+   PAVD  E+  P        R    PG    VP   R + P  +A  R  + 
Sbjct: 200 DLLSADSGLPAVDQGEVAGPRLQPAQPLR----PGA---VPSASRARAPDTKAGTR-ARD 251

Query: 170 AAHGGHRARARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
            A G  + RA    H G G +    L  P   P         +P E +  GLA+C
Sbjct: 252 PAPGASQLRAAHSPHRGGGGAPRTQLAAPPRPP---------LPQENAAAGLASC 297


>gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens]
          Length = 319

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 17/115 (14%)

Query: 110 DVLGAEVHHPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQA 169
           D+L A+   PAVD  E+  P        R    PG    VP   R + P  +A  R  + 
Sbjct: 199 DLLSADSGLPAVDQGEVAGPRLQPAQPLR----PGA---VPSASRARAPDTKAGTR-ARD 250

Query: 170 AAHGGHRARARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
            A G  + RA    H G G +    L  P   P         +P E +  GLA+C
Sbjct: 251 PAPGASQLRAAHSPHRGGGGAPRTQLAAPPRPP---------LPQENAAAGLASC 296


>gi|57222570 codanin 1 [Homo sapiens]
          Length = 1227

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 38/100 (38%), Positives = 44/100 (44%), Gaps = 18/100 (18%)

Query: 129 PGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQA--AAHGGHR---ARARKRS 183
           PG+   +  R  G P G R   G R Q  P   A+    +A  A  GG R     AR+R 
Sbjct: 76  PGASAALPGRPGGPPRGSR---GARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARERG 132

Query: 184 HPG--EGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
             G  EG S E +   PGAG G R R      G PSRP L
Sbjct: 133 GRGLEEGVSGESL---PGAG-GRRLRGS----GSPSRPSL 164


>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 236

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 23/135 (17%)

Query: 76  HNKDRVVEILRG-TVHIHPHGLSYLVGLAGVVERVDV---LGAEVHHPAVDMIEIGAPGS 131
           H   RV    R  T  +HP G     G +G      +   L A     A   + +GA  +
Sbjct: 96  HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155

Query: 132 VEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQ--------AAAHGGHRARA--RK 181
           V+G  A+ R  PGG         QQ+ G  AE +  +        A   GG R RA  R+
Sbjct: 156 VDGFVAQARPGPGG---------QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206

Query: 182 RSHPGEGASAERVLP 196
           R+H G    + R  P
Sbjct: 207 RAHGGSAWRSWRTRP 221


>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
           sapiens]
          Length = 236

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 23/135 (17%)

Query: 76  HNKDRVVEILRG-TVHIHPHGLSYLVGLAGVVERVDV---LGAEVHHPAVDMIEIGAPGS 131
           H   RV    R  T  +HP G     G +G      +   L A     A   + +GA  +
Sbjct: 96  HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155

Query: 132 VEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQ--------AAAHGGHRARA--RK 181
           V+G  A+ R  PGG         QQ+ G  AE +  +        A   GG R RA  R+
Sbjct: 156 VDGFVAQARPGPGG---------QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206

Query: 182 RSHPGEGASAERVLP 196
           R+H G    + R  P
Sbjct: 207 RAHGGSAWRSWRTRP 221


>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
           sapiens]
          Length = 236

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 23/135 (17%)

Query: 76  HNKDRVVEILRG-TVHIHPHGLSYLVGLAGVVERVDV---LGAEVHHPAVDMIEIGAPGS 131
           H   RV    R  T  +HP G     G +G      +   L A     A   + +GA  +
Sbjct: 96  HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155

Query: 132 VEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQ--------AAAHGGHRARA--RK 181
           V+G  A+ R  PGG         QQ+ G  AE +  +        A   GG R RA  R+
Sbjct: 156 VDGFVAQARPGPGG---------QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206

Query: 182 RSHPGEGASAERVLP 196
           R+H G    + R  P
Sbjct: 207 RAHGGSAWRSWRTRP 221


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 34.3 bits (77), Expect = 0.089
 Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 127  GAPGSVEGVAARCRGLPG--GFRRVPGRRRQQ---EPGQRAEQREPQAAAHGGHRARARK 181
            G PG          GLPG  G +  PG        EPG + ++  P      G   RA +
Sbjct: 2290 GEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGE 2349

Query: 182  RSHPGEGASAERVLPKPGAG-PGVRFRAERVMPGEPSRPG 220
               PGE        PK   G PGV       +PG P  PG
Sbjct: 2350 PGDPGEDGQKGAPGPKGFKGDPGVG------VPGSPGPPG 2383



 Score = 32.3 bits (72), Expect = 0.34
 Identities = 34/97 (35%), Positives = 38/97 (39%), Gaps = 16/97 (16%)

Query: 125  EIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSH 184
            E GAPG V G      GLPG  +  PG      PG R    +P      G    A K   
Sbjct: 1348 EPGAPGQVIG--GEGPGLPGR-KGDPGP--SGPPGPRGPLGDPGPRGPPGLPGTAMKGD- 1401

Query: 185  PGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
              +G   ER  P PG G         + PGEP  PGL
Sbjct: 1402 --KGDRGERGPPGPGEGG--------IAPGEPGLPGL 1428



 Score = 30.4 bits (67), Expect = 1.3
 Identities = 34/105 (32%), Positives = 42/105 (40%), Gaps = 16/105 (15%)

Query: 127  GAPGSVEGVAARCR-GLPGGFRRV----PGRRRQQEPGQRAEQREPQAAAHGGHRARARK 181
            G+PGS      R   G PG   R+    PG R + EPG R ++         G +     
Sbjct: 1685 GSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQE------GPRGPKGDPGL 1738

Query: 182  RSHPGE-GASAERVLPKPGAGPGVR----FRAERVMPGEPSRPGL 221
               PGE G    R  P P   PGVR     + +R  PG   R GL
Sbjct: 1739 PGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGL 1783



 Score = 27.7 bits (60), Expect = 8.3
 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 17/108 (15%)

Query: 119  PAVDMIEIGAPGSVEGVAARCR--GLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHR 176
            P + + E G PG   G+A      G+PG   R  G      PG+R E+ E       G R
Sbjct: 2017 PGLALGERGPPGP-SGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEK------GER 2069

Query: 177  ARARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMP---GEPSRPGL 221
                +   PG   +     P P   PG +   +   P   GE   PGL
Sbjct: 2070 GEQGRDGPPGLPGT-----PGPPGPPGPKVSVDEPGPGLSGEQGPPGL 2112


>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
           sapiens]
          Length = 1691

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG 186
           GAPG+     ++  G PG     PG +     G + E   P A    G      +   PG
Sbjct: 533 GAPGAPGFPGSK--GEPGDILTFPGMK-----GDKGELGSPGAPGLPGLPGTPGQDGLPG 585

Query: 187 EGASAERVLPKPGAGPG-VRFRAERVMPGEPSRPGL 221
                   LP P   PG + F+ ER  PG P  PGL
Sbjct: 586 --------LPGPKGEPGGITFKGERGPPGNPGLPGL 613



 Score = 29.6 bits (65), Expect = 2.2
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQ-EPGQRAEQREPQAAAHGGHRARARKRSHP 185
           G PG  +G     +G PG  R  PG+  +  +PG      +P      G      ++   
Sbjct: 279 GPPGGEKGEKGE-QGEPGK-RGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDT 336

Query: 186 GEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
           G       V+P+PG G  +  +    +PG P   G
Sbjct: 337 GPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKG 371



 Score = 29.3 bits (64), Expect = 2.8
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 141  GLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGA 200
            GLPG    V G     +PG   E+ +P      G   +  +   PG G       P P  
Sbjct: 1143 GLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGN------PGPPG 1196

Query: 201  GPGVR-FRAERVMPGEPSRPGL 221
             PG+   + +  +PG P  PGL
Sbjct: 1197 LPGLSGQKGDGGLPGIPGNPGL 1218



 Score = 27.7 bits (60), Expect = 8.3
 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 16/91 (17%)

Query: 141  GLPG-----GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGE-GASAERV 194
            GLPG     GF   PG   Q  PG           A  G +     +  PG  G +  + 
Sbjct: 1217 GLPGPKGEPGFHGFPGV--QGPPGPPGSP----GPALEGPKGNPGPQGPPGRPGPTGFQG 1270

Query: 195  LPKPGAGPGVR----FRAERVMPGEPSRPGL 221
            LP P   PG+      + E+  PG+P  PGL
Sbjct: 1271 LPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1301


>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
           sapiens]
          Length = 1685

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG 186
           GAPG+     ++  G PG     PG +     G + E   P A    G      +   PG
Sbjct: 533 GAPGAPGFPGSK--GEPGDILTFPGMK-----GDKGELGSPGAPGLPGLPGTPGQDGLPG 585

Query: 187 EGASAERVLPKPGAGPG-VRFRAERVMPGEPSRPGL 221
                   LP P   PG + F+ ER  PG P  PGL
Sbjct: 586 --------LPGPKGEPGGITFKGERGPPGNPGLPGL 613



 Score = 29.6 bits (65), Expect = 2.2
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQ-EPGQRAEQREPQAAAHGGHRARARKRSHP 185
           G PG  +G     +G PG  R  PG+  +  +PG      +P      G      ++   
Sbjct: 279 GPPGGEKGEKGE-QGEPGK-RGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDT 336

Query: 186 GEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
           G       V+P+PG G  +  +    +PG P   G
Sbjct: 337 GPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKG 371



 Score = 29.3 bits (64), Expect = 2.8
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 141  GLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGA 200
            GLPG    V G     +PG   E+ +P      G   +  +   PG G       P P  
Sbjct: 1143 GLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGN------PGPPG 1196

Query: 201  GPGVR-FRAERVMPGEPSRPGL 221
             PG+   + +  +PG P  PGL
Sbjct: 1197 LPGLSGQKGDGGLPGIPGNPGL 1218



 Score = 27.7 bits (60), Expect = 8.3
 Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 22/91 (24%)

Query: 141  GLPG-----GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG-EGASAERV 194
            GLPG     GF   PG   Q  PG       P  A  G        + +PG +G      
Sbjct: 1217 GLPGPKGEPGFHGFPGV--QGPPGPPGS---PGPALEG-------PKGNPGPQGPPGRPG 1264

Query: 195  LPKPGAGPGVR----FRAERVMPGEPSRPGL 221
            LP P   PG+      + E+  PG+P  PGL
Sbjct: 1265 LPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1295


>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
           sapiens]
          Length = 1688

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG 186
           GAPG+     ++  G PG     PG +     G + E   P A    G      +   PG
Sbjct: 533 GAPGAPGFPGSK--GEPGDILTFPGMK-----GDKGELGSPGAPGLPGLPGTPGQDGLPG 585

Query: 187 EGASAERVLPKPGAGPG-VRFRAERVMPGEPSRPGL 221
                   LP P   PG + F+ ER  PG P  PGL
Sbjct: 586 --------LPGPKGEPGGITFKGERGPPGNPGLPGL 613



 Score = 29.6 bits (65), Expect = 2.2
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQ-EPGQRAEQREPQAAAHGGHRARARKRSHP 185
           G PG  +G     +G PG  R  PG+  +  +PG      +P      G      ++   
Sbjct: 279 GPPGGEKGEKGE-QGEPGK-RGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDT 336

Query: 186 GEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
           G       V+P+PG G  +  +    +PG P   G
Sbjct: 337 GPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKG 371



 Score = 29.3 bits (64), Expect = 2.8
 Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)

Query: 141  GLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGA 200
            GLPG    V G     +PG   E+ +P      G   +  +   PG G       P P  
Sbjct: 1143 GLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGN------PGPPG 1196

Query: 201  GPGVR-FRAERVMPGEPSRPGL 221
             PG+   + +  +PG P  PGL
Sbjct: 1197 LPGLSGQKGDGGLPGIPGNPGL 1218


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 128 APGSVEGVAARCRGLPGGFRRVPGRRRQQE-----PGQRAEQREPQAAAHGGHRA--RAR 180
           AP S +G   R  G  G  RR   RRR+       P +R  +R   A   G  R+  RAR
Sbjct: 369 APSS-QGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRAR 427

Query: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEP-SRP 219
             S  G G  A    P+PG+  G     +R     P +RP
Sbjct: 428 SSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARP 467


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 11/91 (12%)

Query: 141 GLPGGFR-RVPGRRRQQ----EPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVL 195
           G+PG     VPG+  QQ     PG R    E  A    G   +  +  +   G   ER L
Sbjct: 145 GIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGL 204

Query: 196 PKP------GAGPGVRFRAERVMPGEPSRPG 220
           P P         PGV  R E  +PG+P   G
Sbjct: 205 PGPQGPTGPSGPPGVGKRGENGVPGQPGIKG 235



 Score = 28.9 bits (63), Expect = 3.7
 Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG 186
           G PG V    A+  G+PG       R     PG R     P      G +        PG
Sbjct: 419 GLPGPVGPAGAK--GMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPG 476

Query: 187 EGASAERVLPKPGAGPGV----RFRAERVMPGEPSRPG 220
               A + L  P   PG         E  +PG P  PG
Sbjct: 477 PAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPG 514


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 158  PGQRAEQREPQAAAHGGHRARARKRSHPG---------EGASAERVLPKPGAGPGVRFRA 208
            PG+   Q EP  A + GH+        PG         E   AE     PG    V  R 
Sbjct: 1296 PGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRG 1355

Query: 209  ERVMPGEPSRPG 220
            +R  PG+P  PG
Sbjct: 1356 DRGEPGDPGYPG 1367



 Score = 31.6 bits (70), Expect = 0.57
 Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 16/96 (16%)

Query: 127  GAPGSVEGVAARCRGLPG--GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSH 184
            G PG   GV  R +GL G  G   +PGR      GQ  +Q E       G    A KR +
Sbjct: 1424 GLPGP-RGVVGR-QGLEGIAGPDGLPGR-----DGQAGQQGEQGDDGDPGPMGPAGKRGN 1476

Query: 185  PGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
            PG       V   PGA     F+ E  +PG+   PG
Sbjct: 1477 PG-------VAGLPGAQGPPGFKGESGLPGQLGPPG 1505



 Score = 30.8 bits (68), Expect = 0.98
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 8/95 (8%)

Query: 128 APGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG- 186
           +PG     A    GLPG     PG      PG++  +  P  A H G + +      PG 
Sbjct: 681 SPGKAHDGAKGDMGLPG-LSGNPG-----PPGRKGHKGYPGPAGHPGEQGQPGPEGSPGA 734

Query: 187 EGASAERVLPKPGAGPGVR-FRAERVMPGEPSRPG 220
           +G    + LP P   PG +  R    +PG    PG
Sbjct: 735 KGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPG 769


>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
           sapiens]
          Length = 666

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 127 GAPGSVEGVAARCRGLPGGFR-RVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHP 185
           G  G+  G   R R L    + R   R++Q+EP Q       + A     R R R+R + 
Sbjct: 19  GPEGAEAGAHGRARALLERLQSRARERQQQREPAQTEAAASTEPATRRRRRPRRRRRVND 78

Query: 186 GEGASAERVLPKPGAGPGVRFRAE--RVMPGEPS 217
            E  S E    K     G    AE     PGEPS
Sbjct: 79  AEPGSPEAPQGKRRKADGEDAGAESNEEAPGEPS 112


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 127 GAPGSVEGVAARCRGLPGG-FRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRS-H 184
           GA  + EG AA   G P     R  GRR+  EPG RA +  P  A+ G H   A  R   
Sbjct: 408 GAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGP--ASSGWHAGSAAGRGWD 465

Query: 185 PGEGASAER 193
           PG G+ A R
Sbjct: 466 PGGGSRARR 474


>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
           sapiens]
          Length = 193

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 17/81 (20%)

Query: 153 RRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAER------------VLPKPGA 200
           R+QQ   QR   R P  AA G H    R R  PG  A  E             +LP PG 
Sbjct: 59  RQQQRQQQRPRPRSPDPAARGQHVPELRSRK-PGPAARTEEGGDVTGRPWQPPLLPPPGV 117

Query: 201 -GPGVR---FRAERVMPGEPS 217
             PG R    R ER  P  P+
Sbjct: 118 PTPGNRGGERRGERRAPPRPA 138


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 127 GAPGSVEGVAARCRGLPGG-FRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRS-H 184
           GA  + EG AA   G P     R  GRR+  EPG RA +  P  A+ G H   A  R   
Sbjct: 408 GAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGP--ASSGWHAGSAAGRGWD 465

Query: 185 PGEGASAER 193
           PG G+ A R
Sbjct: 466 PGGGSRARR 474


>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
          Length = 403

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 12/86 (13%)

Query: 130 GSVEGVAARCRG-LPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKR------ 182
           G   G+AA   G  P   R  P  RR+   G+  + R+ + AA  G R +A         
Sbjct: 76  GGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMAT 135

Query: 183 -SHPGEGA-SAERVL---PKPGAGPG 203
            + PGE   +AER L   P   AGPG
Sbjct: 136 PARPGEAEDAAERPLQDEPAAAAGPG 161


>gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo
           sapiens]
          Length = 145

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 143 PGGFRRVPGRRRQQEP-GQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGAG 201
           P GF+R PG R++  P     E   P AAA      R R+   PG   S  R  P+   G
Sbjct: 62  PPGFQRGPGARKRSAPSAMLLEPPHPSAAA--APLQRRRRTPPPGTVGSKRRCPPRLRLG 119

Query: 202 PGVRFRAERVMPGEPSRP 219
            G  +       G P  P
Sbjct: 120 LGFPYPGPASSLGSPLSP 137


>gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo
           sapiens]
          Length = 145

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 143 PGGFRRVPGRRRQQEP-GQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGAG 201
           P GF+R PG R++  P     E   P AAA      R R+   PG   S  R  P+   G
Sbjct: 62  PPGFQRGPGARKRSAPSAMLLEPPHPSAAA--APLQRRRRTPPPGTVGSKRRCPPRLRLG 119

Query: 202 PGVRFRAERVMPGEPSRP 219
            G  +       G P  P
Sbjct: 120 LGFPYPGPASSLGSPLSP 137


>gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo
           sapiens]
          Length = 145

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 143 PGGFRRVPGRRRQQEP-GQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGAG 201
           P GF+R PG R++  P     E   P AAA      R R+   PG   S  R  P+   G
Sbjct: 62  PPGFQRGPGARKRSAPSAMLLEPPHPSAAA--APLQRRRRTPPPGTVGSKRRCPPRLRLG 119

Query: 202 PGVRFRAERVMPGEPSRP 219
            G  +       G P  P
Sbjct: 120 LGFPYPGPASSLGSPLSP 137


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,728,285
Number of Sequences: 37866
Number of extensions: 565820
Number of successful extensions: 3131
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 2881
Number of HSP's gapped (non-prelim): 504
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press