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Search of human proteins with 239741942
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741942 PREDICTED: hypothetical protein [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113414915 PREDICTED: hypothetical protein [Homo sapiens] 456 e-129
gi|239741942 PREDICTED: hypothetical protein [Homo sapiens] 456 e-129
gi|169165345 PREDICTED: hypothetical protein [Homo sapiens] 397 e-111
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 42 5e-04
gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo s... 41 0.001
gi|19924099 synapsin I isoform Ia [Homo sapiens] 40 0.002
gi|19924097 synapsin I isoform Ib [Homo sapiens] 40 0.002
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 39 0.003
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 39 0.003
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 39 0.003
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 39 0.003
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 39 0.003
gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo sap... 38 0.008
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo sap... 38 0.008
gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo sap... 38 0.008
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 38 0.008
gi|33188461 GATA binding protein 4 [Homo sapiens] 37 0.010
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 37 0.013
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 37 0.013
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 37 0.013
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 37 0.013
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 37 0.013
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 37 0.017
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 37 0.017
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 37 0.017
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 37 0.017
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 36 0.023
gi|40288197 GATA binding protein 6 [Homo sapiens] 36 0.023
>gi|113414915 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 456 bits (1174), Expect = e-129
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP
Sbjct: 1 MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
Query: 61 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR
Sbjct: 61 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE
Sbjct: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
Query: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI
Sbjct: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
>gi|239741942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 220
Score = 456 bits (1174), Expect = e-129
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP
Sbjct: 1 MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
Query: 61 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR
Sbjct: 61 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE
Sbjct: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
Query: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI
Sbjct: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
>gi|169165345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 397 bits (1021), Expect = e-111
Identities = 198/220 (90%), Positives = 198/220 (90%), Gaps = 15/220 (6%)
Query: 1 MGWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGP 60
MGWRR E GGPTYRRPAGVSGTR IRAP A PAGSRDGGAQGP
Sbjct: 1 MGWRRPEVGGPTYRRPAGVSGTRSIRAP---------------AFSPEPAGSRDGGAQGP 45
Query: 61 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR
Sbjct: 46 VSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 105
Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 180
LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE
Sbjct: 106 LCSLPGFCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRSKE 165
Query: 181 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 220
VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI
Sbjct: 166 VANLLFSHCCVLEGCGAMIPLLKILLNASPLCCSLNNEDI 205
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 41.6 bits (96), Expect = 5e-04
Identities = 42/158 (26%), Positives = 54/158 (34%), Gaps = 18/158 (11%)
Query: 13 YRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQG------PVSSGRI 66
+ R G +G R + G +R P P S+ G G+R G G S
Sbjct: 219 WNRHGGAAGARA-QVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAPSSHS 277
Query: 67 QGGSRRPLPAGPHPGLSAEVPPVPSRRW-----------LSGRGKAGAVLAGTGVYALLP 115
G P P+ PG A P R L G G+ V G +AL
Sbjct: 278 TGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGSGLTQLVGSGRGSGVTHSVGTHALAT 337
Query: 116 EAGSRLCSLPGFCAATPHPRRLSSLPLHAPAGQGELQA 153
GSR G PH R LSS +P ++A
Sbjct: 338 RRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPRSPSVRA 375
>gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo
sapiens]
Length = 3014
Score = 40.8 bits (94), Expect = 0.001
Identities = 41/117 (35%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 26 RAPGVLRR--LTPSCPNP--ASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPG 81
R PG R L P C A+ T P D G G ++ R G+ RPLP
Sbjct: 34 RVPGGTRAFALRPGCTYAVGAACTPRAPRELLDVGRDGRLAGRRRVSGAGRPLPLQVR-- 91
Query: 82 LSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCS-----LPGFCAATPH 133
L A P LS R +A L G G A L G+RLC +PG CAA H
Sbjct: 92 LVARSAPTA----LSRRLRARTHLPGCGARARLCGTGARLCGALCFPVPGGCAAAQH 144
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 40.0 bits (92), Expect = 0.002
Identities = 35/100 (35%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 8 AGGP----TYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG-SRDGGAQGPVS 62
AGGP R PA S R+ P R+ + S P P A+G P G R G Q P
Sbjct: 537 AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG 596
Query: 63 SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAG 102
G +R+ AGP P PP + SG G AG
Sbjct: 597 PA---GPTRQASQAGPVPRTG---PPTTQQPRPSGPGPAG 630
Score = 29.6 bits (65), Expect = 2.1
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 9 GGPTYR--RPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRI 66
G PT + RP+G R + P + ++ + P PA+A GGP + +Q ++ +
Sbjct: 614 GPPTTQQPRPSGPGPAGRPK-PQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFNL 672
Query: 67 QGGSRRPLPAGPHPGLSAE 85
P PA P P LS +
Sbjct: 673 ------PEPAPPRPSLSQD 685
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 40.0 bits (92), Expect = 0.002
Identities = 35/100 (35%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 8 AGGP----TYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG-SRDGGAQGPVS 62
AGGP R PA S R+ P R+ + S P P A+G P G R G Q P
Sbjct: 537 AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG 596
Query: 63 SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAG 102
G +R+ AGP P PP + SG G AG
Sbjct: 597 PA---GPTRQASQAGPVPRTG---PPTTQQPRPSGPGPAG 630
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 5 RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSC--PNPASATGGGPAGSRDGGAQGPVS 62
RLE G T+ P +GT AP R P+ P+P + + G +GS + P
Sbjct: 53 RLERG--TFS-PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPR 109
Query: 63 SGRIQGGSR-RPLPAGPHPGL-SAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
+ Q GSR RP GP PG SA P P+ + R G +G + +
Sbjct: 110 PSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169
Query: 121 LCSLPGFCAATPHP---RRLSSLP 141
+ + P P P RR + P
Sbjct: 170 VGARPSRAGGQPPPLTCRRCRAAP 193
Score = 30.4 bits (67), Expect = 1.2
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 22/117 (18%)
Query: 5 RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG------------S 52
R A GP RP G S R AP + + P A++ G GP S
Sbjct: 120 RPAAPGP---RP-GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPS 175
Query: 53 RDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTG 109
R GG P++ R + RR PGL P+ SR SG G G+G
Sbjct: 176 RAGGQPPPLTCRRCRAAPRRSARPFRRPGL-----PLKSRPG-SGTGARSCGTWGSG 226
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 5 RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSC--PNPASATGGGPAGSRDGGAQGPVS 62
RLE G T+ P +GT AP R P+ P+P + + G +GS + P
Sbjct: 53 RLERG--TFS-PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPR 109
Query: 63 SGRIQGGSR-RPLPAGPHPGL-SAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
+ Q GSR RP GP PG SA P P+ + R G +G + +
Sbjct: 110 PSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169
Query: 121 LCSLPGFCAATPHP---RRLSSLP 141
+ + P P P RR + P
Sbjct: 170 VGARPSRAGGQPPPLTCRRCRAAP 193
Score = 29.3 bits (64), Expect = 2.8
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 5 RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG------------S 52
R A GP RP G S R AP + + P A++ G GP S
Sbjct: 120 RPAAPGP---RP-GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPS 175
Query: 53 RDGGAQGPVSSGRIQGGSRRPLPAGPHPGL 82
R GG P++ R + RR PGL
Sbjct: 176 RAGGQPPPLTCRRCRAAPRRSARPFRRPGL 205
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 38.9 bits (89), Expect = 0.003
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 34 LTPSCPNPASAT--GGGPAGSRDGGAQGPVSS--GRIQGGSRRPLPAGPHPGLSAEVPPV 89
L P P A GGG G ++GG +GP +S R QG PLPA P + E
Sbjct: 694 LGPEVPGAVGAALRGGGEVGIQEGGVRGPPTSRPARAQGAQESPLPAPSEPPEAVEGKAS 753
Query: 90 PSRRWLSGR------GKAGAVLAG 107
P + G G AG AG
Sbjct: 754 PREQGEEGAPTQPCCGLAGGPQAG 777
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 5 RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSC--PNPASATGGGPAGSRDGGAQGPVS 62
RLE G T+ P +GT AP R P+ P+P + + G +GS + P
Sbjct: 53 RLERG--TFS-PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPR 109
Query: 63 SGRIQGGSR-RPLPAGPHPGL-SAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
+ Q GSR RP GP PG SA P P+ + R G +G + +
Sbjct: 110 PSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169
Query: 121 LCSLPGFCAATPHP---RRLSSLP 141
+ + P P P RR + P
Sbjct: 170 VGARPSRAGGQPPPLTCRRCRAAP 193
Score = 30.4 bits (67), Expect = 1.2
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 22/117 (18%)
Query: 5 RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG------------S 52
R A GP RP G S R AP + + P A++ G GP S
Sbjct: 120 RPAAPGP---RP-GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPS 175
Query: 53 RDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTG 109
R GG P++ R + RR PGL P+ SR SG G G+G
Sbjct: 176 RAGGQPPPLTCRRCRAAPRRSARPFRRPGL-----PLKSRPG-SGTGARSCGTWGSG 226
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 38.9 bits (89), Expect = 0.003
Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 10/144 (6%)
Query: 5 RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSC--PNPASATGGGPAGSRDGGAQGPVS 62
RLE G T+ P +GT AP R P+ P+P + + G +GS + P
Sbjct: 53 RLERG--TFS-PESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPR 109
Query: 63 SGRIQGGSR-RPLPAGPHPGL-SAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSR 120
+ Q GSR RP GP PG SA P P+ + R G +G + +
Sbjct: 110 PSQHQSGSRLRPAAPGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQ 169
Query: 121 LCSLPGFCAATPHP---RRLSSLP 141
+ + P P P RR + P
Sbjct: 170 VGARPSRAGGQPPPLTCRRCRAAP 193
Score = 30.4 bits (67), Expect = 1.2
Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 22/117 (18%)
Query: 5 RLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAG------------S 52
R A GP RP G S R AP + + P A++ G GP S
Sbjct: 120 RPAAPGP---RP-GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGARPS 175
Query: 53 RDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTG 109
R GG P++ R + RR PGL P+ SR SG G G+G
Sbjct: 176 RAGGQPPPLTCRRCRAAPRRSARPFRRPGL-----PLKSRPG-SGTGARSCGTWGSG 226
>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
Length = 821
Score = 38.9 bits (89), Expect = 0.003
Identities = 52/181 (28%), Positives = 70/181 (38%), Gaps = 18/181 (9%)
Query: 10 GPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGG 69
GP RR G +RR RAP R +P + T S DGGA G +S G G
Sbjct: 58 GPAARRAPGPPTSRRPRAP---RPGLAGARSPGAWTSSESLASDDGGAPGILSQGAPSGL 114
Query: 70 SRRPL-PAGP--HPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPG 126
+PL P P +P + + SRR + A G GV P R P
Sbjct: 115 LMQPLSPRAPVRNPRVEHTLRET-SRRLELAQTHERAPSPGRGV-PRSPRGSGRSSPAPN 172
Query: 127 FCAATPHPRRLSSLPLHAPAGQGELQASDFISLWKARDQAKNFGRAFQHLRS--KEVANL 184
A+P P +L + E A+ L + DQA+ + +R+ E A L
Sbjct: 173 LAPASPGPAQLQLV--------REQMAAALRRLRELEDQARTLPELQEQVRALRAEKARL 224
Query: 185 L 185
L
Sbjct: 225 L 225
>gi|239757400 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 37.7 bits (86), Expect = 0.008
Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 28/151 (18%)
Query: 27 APGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGS-------------RRP 73
AP R + S P A A+ PAGS P+ S R GGS RR
Sbjct: 21 APKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARRT 80
Query: 74 LPAGPHPGLSAEVPPVPSRR---WLSGRGKAGAVLAGTGVYALLPE-------AGSRLCS 123
+P P S +PP P R W + G A G V L +L +
Sbjct: 81 VP--PSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGT 138
Query: 124 LP--GFCAATPHPRRLSSLPLHAPAGQGELQ 152
P A TP R + SLP HAP Q
Sbjct: 139 TPPCNHAAGTPPLRLIHSLP-HAPPASASAQ 168
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 37.7 bits (86), Expect = 0.008
Identities = 48/152 (31%), Positives = 56/152 (36%), Gaps = 23/152 (15%)
Query: 4 RRLEAGGPTYRRPAG--VSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQ--G 59
RR GP R P + TRR APG R AT AG+R A+
Sbjct: 96 RRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLP 155
Query: 60 PVSSGRIQGGSRRPLPAGPHPGLSAEVP--PVPSRRWLSGRGKAGAVLAGTGVYALLPEA 117
P G G R L PG SA +P P SRRW A + G G P
Sbjct: 156 PPCGGTSLGAGSRAL---RRPG-SAALPRSPSSSRRW--------AAMPGPGA----PRP 199
Query: 118 GSRLCSLPGFCAATPHPRRLSSLPLHAPAGQG 149
G+ GF A P P +S+ PA G
Sbjct: 200 GAPGTWPVGFAVAAP-PAAAASVAPPPPAVAG 230
>gi|169214485 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 37.7 bits (86), Expect = 0.008
Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 28/151 (18%)
Query: 27 APGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGS-------------RRP 73
AP R + S P A A+ PAGS P+ S R GGS RR
Sbjct: 21 APKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARRT 80
Query: 74 LPAGPHPGLSAEVPPVPSRR---WLSGRGKAGAVLAGTGVYALLPE-------AGSRLCS 123
+P P S +PP P R W + G A G V L +L +
Sbjct: 81 VP--PSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGT 138
Query: 124 LP--GFCAATPHPRRLSSLPLHAPAGQGELQ 152
P A TP R + SLP HAP Q
Sbjct: 139 TPPCNHAAGTPPLRLIHSLP-HAPPASASAQ 168
>gi|169213439 PREDICTED: hypothetical protein LOC147670 [Homo
sapiens]
Length = 338
Score = 37.7 bits (86), Expect = 0.008
Identities = 45/151 (29%), Positives = 54/151 (35%), Gaps = 28/151 (18%)
Query: 27 APGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGS-------------RRP 73
AP R + S P A A+ PAGS P+ S R GGS RR
Sbjct: 21 APKAARDVNGSAPQTAQASPDSPAGSGSAPRIAPLISIRTPGGSGQNGSAPQAAPQARRT 80
Query: 74 LPAGPHPGLSAEVPPVPSRR---WLSGRGKAGAVLAGTGVYALLPE-------AGSRLCS 123
+P P S +PP P R W + G A G V L +L +
Sbjct: 81 VP--PSLAGSFSLPPTPDSRFADWRTTGGVRKAAGLGASVAGYLEHNLRAHQLEMDQLGT 138
Query: 124 LP--GFCAATPHPRRLSSLPLHAPAGQGELQ 152
P A TP R + SLP HAP Q
Sbjct: 139 TPPCNHAAGTPPLRLIHSLP-HAPPASASAQ 168
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 37.7 bits (86), Expect = 0.008
Identities = 40/148 (27%), Positives = 47/148 (31%), Gaps = 9/148 (6%)
Query: 8 AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQG-PVSSGRI 66
AGG P G RR P R P G A + D G P S R
Sbjct: 99 AGGAA---PCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARAADAACNGLPGSDSR- 154
Query: 67 QGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGSRLCSLPG 126
R P G G + PPVP+ + +A A T + L LPG
Sbjct: 155 ----RAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCWECLQNNLAVLPG 210
Query: 127 FCAATPHPRRLSSLPLHAPAGQGELQAS 154
A PH P A Q + AS
Sbjct: 211 ELGALPHSATAEEKPARALPAQDDRGAS 238
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 37.4 bits (85), Expect = 0.010
Identities = 45/155 (29%), Positives = 55/155 (35%), Gaps = 38/155 (24%)
Query: 7 EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPA---SATGGGPAGSRDGGAQGPVSS 63
EAGGP + + + P TP P+ S GG AGS GGA G S
Sbjct: 19 EAGGPGAFMHGAGAASSPVYVP------TPRVPSSVLGLSYLQGGGAGSASGGASGGSSG 72
Query: 64 GRIQG---GSRRPLPAGPHPGL--SAEVPPVPSRR------------------------W 94
G G G+++ P G +A PP S R +
Sbjct: 73 GAASGAGPGTQQGSPGWSQAGADGAAYTPPPVSPRFSFPGTTGSLAAAAAAAAAREAAAY 132
Query: 95 LSGRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCA 129
SG G AGA LAG Y AGS P + A
Sbjct: 133 SSGGGAAGAGLAGREQYGRAGFAGSYSSPYPAYMA 167
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.0 bits (84), Expect = 0.013
Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 7 EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRI 66
EAG R P G G R PG TP P PA A+G P GA+G + I
Sbjct: 376 EAGPTGARGPEGAQGPRG--EPG-----TPGSPGPAGASGN-PGTDGIPGAKGSAGAPGI 427
Query: 67 QGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAG 102
G P P GP PG P+ + G AG
Sbjct: 428 AGAPGFPGPRGP-PGPQGATGPLGPKGQTGEPGIAG 462
Score = 32.7 bits (73), Expect = 0.25
Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 16 PAGVSGTRRIRA-PGVL-RRLTPSCPNPASATG--GGPAGSRDGGAQGPVSSGRIQGGSR 71
P G++G R I PG R P P P+ G G P S D G GPV + G +
Sbjct: 973 PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG 1032
Query: 72 RPLPAGPHPGLSAEVPPVPSRRWLSG----RGKAGAV 104
P G PG A+ P P R +G RG+ GAV
Sbjct: 1033 EPGREG-SPG--ADGP--PGRDGAAGVKGDRGETGAV 1064
Score = 32.0 bits (71), Expect = 0.43
Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 30/119 (25%)
Query: 9 GGPTYRRPAGVSGTRRIRA-PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
G P R P+G++G + PG R P P TG D G QG V
Sbjct: 528 GAPGERGPSGLAGPKGANGDPG--RPGEPGLPGARGLTGR----PGDAGPQGKVGPSGAP 581
Query: 68 GGSRRPLPAGP--------------------HPGLSAE--VPPVPSRRWLSGR-GKAGA 103
G RP P GP PG + E +P P R L G+ G+ GA
Sbjct: 582 GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 640
Score = 31.6 bits (70), Expect = 0.56
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 39 PNPASATG-GGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPS 91
P P TG GP G+R GAQGP + G + R P G + PP PS
Sbjct: 872 PGPQGPTGVTGPKGAR--GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 923
Score = 28.5 bits (62), Expect = 4.7
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 7 EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGG-GPAG-SRDGGAQGPVSSG 64
EAG P R G G ++ P P P+ G GPAG S G GPV
Sbjct: 1120 EAGEPGERGLKGHRGFTGLQG-------LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPS 1172
Query: 65 RIQGGSRRPLPAGPHPG 81
G + P P GP PG
Sbjct: 1173 GKDGANGIPGPIGP-PG 1188
Score = 27.7 bits (60), Expect = 8.0
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 16 PAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLP 75
PAG +G R APG P P PA G P GA+G +G + P P
Sbjct: 811 PAGSAGARG--APGERGETGP--PGPAGFAGP-PGADGQPGAKGEQGEAGQKGDAGAPGP 865
Query: 76 AGP 78
GP
Sbjct: 866 QGP 868
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.0 bits (84), Expect = 0.013
Identities = 33/96 (34%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 7 EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRI 66
EAG R P G G R PG TP P PA A+G P GA+G + I
Sbjct: 307 EAGPTGARGPEGAQGPRG--EPG-----TPGSPGPAGASGN-PGTDGIPGAKGSAGAPGI 358
Query: 67 QGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAG 102
G P P GP PG P+ + G AG
Sbjct: 359 AGAPGFPGPRGP-PGPQGATGPLGPKGQTGEPGIAG 393
Score = 32.7 bits (73), Expect = 0.25
Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 16 PAGVSGTRRIRA-PGVL-RRLTPSCPNPASATG--GGPAGSRDGGAQGPVSSGRIQGGSR 71
P G++G R I PG R P P P+ G G P S D G GPV + G +
Sbjct: 904 PQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAG 963
Query: 72 RPLPAGPHPGLSAEVPPVPSRRWLSG----RGKAGAV 104
P G PG A+ P P R +G RG+ GAV
Sbjct: 964 EPGREG-SPG--ADGP--PGRDGAAGVKGDRGETGAV 995
Score = 32.0 bits (71), Expect = 0.43
Identities = 35/119 (29%), Positives = 43/119 (36%), Gaps = 30/119 (25%)
Query: 9 GGPTYRRPAGVSGTRRIRA-PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
G P R P+G++G + PG R P P TG D G QG V
Sbjct: 459 GAPGERGPSGLAGPKGANGDPG--RPGEPGLPGARGLTGR----PGDAGPQGKVGPSGAP 512
Query: 68 GGSRRPLPAGP--------------------HPGLSAE--VPPVPSRRWLSGR-GKAGA 103
G RP P GP PG + E +P P R L G+ G+ GA
Sbjct: 513 GEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGA 571
Score = 31.6 bits (70), Expect = 0.56
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 39 PNPASATG-GGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPS 91
P P TG GP G+R GAQGP + G + R P G + PP PS
Sbjct: 803 PGPQGPTGVTGPKGAR--GAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPS 854
Score = 28.5 bits (62), Expect = 4.7
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 7 EAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGG-GPAG-SRDGGAQGPVSSG 64
EAG P R G G ++ P P P+ G GPAG S G GPV
Sbjct: 1051 EAGEPGERGLKGHRGFTGLQG-------LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPS 1103
Query: 65 RIQGGSRRPLPAGPHPG 81
G + P P GP PG
Sbjct: 1104 GKDGANGIPGPIGP-PG 1119
Score = 27.7 bits (60), Expect = 8.0
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 16 PAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLP 75
PAG +G R APG P P PA G P GA+G +G + P P
Sbjct: 742 PAGSAGARG--APGERGETGP--PGPAGFAGP-PGADGQPGAKGEQGEAGQKGDAGAPGP 796
Query: 76 AGP 78
GP
Sbjct: 797 QGP 799
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 37.0 bits (84), Expect = 0.013
Identities = 45/149 (30%), Positives = 54/149 (36%), Gaps = 22/149 (14%)
Query: 8 AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-----GGPAGSRDGGAQGPVS 62
A GP R G G + PG+L P PA G G P D G +GP
Sbjct: 289 AHGP--RGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 346
Query: 63 SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAG--TGVYALLPEAGSR 120
+ G P P PG S +P R+ SG G G V+A A+L +A
Sbjct: 347 RAGLPGSDGAPGP----PGTSLMLP----FRFGSGGGDKGPVVAAQEAQAQAILQQARLA 398
Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQG 149
L PG T P PL P G
Sbjct: 399 LRGPPGPMGYTGRPG-----PLGQPGSPG 422
Score = 32.3 bits (72), Expect = 0.33
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 8 AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
AG P R AG G I PG R P P A+ G P + G GP +Q
Sbjct: 928 AGSPGERGAAGSGGP--IGPPG---RPGPQGPPGAAGEKGVPG---EKGPIGPTGRDGVQ 979
Query: 68 GGSRRPLPAGPHPGLSAE 85
G P PAGP PG++ E
Sbjct: 980 GPVGLPGPAGP-PGVAGE 996
Score = 29.6 bits (65), Expect = 2.1
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 9 GGPTYRRPAGVSGTRRIRA-------PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPV 61
G P PAG+ G R PG+ PS P GPAGS G +G
Sbjct: 887 GAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP-------GPAGSP--GERGAA 937
Query: 62 SSGRIQGGSRRPLPAGPHPGLSAE 85
SG G RP P GP PG + E
Sbjct: 938 GSGGPIGPPGRPGPQGP-PGAAGE 960
Score = 28.1 bits (61), Expect = 6.1
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 9 GGPTYRRPAGVSGTRRIRAP-GVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
G P R PAG +G + P G + L P G P + G +GP +
Sbjct: 1094 GPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1153
Query: 68 GGSRRPLPAGPHPG 81
G S +P GP PG
Sbjct: 1154 GESGQPGEPGP-PG 1166
Score = 28.1 bits (61), Expect = 6.1
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 9 GGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-------GGPAGSRDGGAQGPV 61
G P + G+ G PG P P PA G GGP G + G QGP
Sbjct: 1352 GSPGQKGEMGIPGASGPIGPGG----PPGLPGPAGPKGAKGATGPGGPKGEK--GVQGPP 1405
Query: 62 SSGRIQGGSRRPLP 75
G +PLP
Sbjct: 1406 GHPGPPGEVIQPLP 1419
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 37.0 bits (84), Expect = 0.013
Identities = 45/149 (30%), Positives = 54/149 (36%), Gaps = 22/149 (14%)
Query: 8 AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-----GGPAGSRDGGAQGPVS 62
A GP R G G + PG+L P PA G G P D G +GP
Sbjct: 268 AHGP--RGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 325
Query: 63 SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAG--TGVYALLPEAGSR 120
+ G P P PG S +P R+ SG G G V+A A+L +A
Sbjct: 326 RAGLPGSDGAPGP----PGTSLMLP----FRFGSGGGDKGPVVAAQEAQAQAILQQARLA 377
Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQG 149
L PG T P PL P G
Sbjct: 378 LRGPPGPMGYTGRPG-----PLGQPGSPG 401
Score = 32.3 bits (72), Expect = 0.33
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 8 AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
AG P R AG G I PG R P P A+ G P + G GP +Q
Sbjct: 907 AGSPGERGAAGSGGP--IGPPG---RPGPQGPPGAAGEKGVPG---EKGPIGPTGRDGVQ 958
Query: 68 GGSRRPLPAGPHPGLSAE 85
G P PAGP PG++ E
Sbjct: 959 GPVGLPGPAGP-PGVAGE 975
Score = 29.6 bits (65), Expect = 2.1
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 9 GGPTYRRPAGVSGTRRIRA-------PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPV 61
G P PAG+ G R PG+ PS P GPAGS G +G
Sbjct: 866 GAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP-------GPAGSP--GERGAA 916
Query: 62 SSGRIQGGSRRPLPAGPHPGLSAE 85
SG G RP P GP PG + E
Sbjct: 917 GSGGPIGPPGRPGPQGP-PGAAGE 939
Score = 28.1 bits (61), Expect = 6.1
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 9 GGPTYRRPAGVSGTRRIRAP-GVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
G P R PAG +G + P G + L P G P + G +GP +
Sbjct: 1073 GPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1132
Query: 68 GGSRRPLPAGPHPG 81
G S +P GP PG
Sbjct: 1133 GESGQPGEPGP-PG 1145
Score = 28.1 bits (61), Expect = 6.1
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 9 GGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-------GGPAGSRDGGAQGPV 61
G P + G+ G PG P P PA G GGP G + G QGP
Sbjct: 1331 GSPGQKGEMGIPGASGPIGPGG----PPGLPGPAGPKGAKGATGPGGPKGEK--GVQGPP 1384
Query: 62 SSGRIQGGSRRPLP 75
G +PLP
Sbjct: 1385 GHPGPPGEVIQPLP 1398
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 37.0 bits (84), Expect = 0.013
Identities = 45/149 (30%), Positives = 54/149 (36%), Gaps = 22/149 (14%)
Query: 8 AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-----GGPAGSRDGGAQGPVS 62
A GP R G G + PG+L P PA G G P D G +GP
Sbjct: 375 AHGP--RGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPPG 432
Query: 63 SGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAG--TGVYALLPEAGSR 120
+ G P P PG S +P R+ SG G G V+A A+L +A
Sbjct: 433 RAGLPGSDGAPGP----PGTSLMLP----FRFGSGGGDKGPVVAAQEAQAQAILQQARLA 484
Query: 121 LCSLPGFCAATPHPRRLSSLPLHAPAGQG 149
L PG T P PL P G
Sbjct: 485 LRGPPGPMGYTGRPG-----PLGQPGSPG 508
Score = 32.3 bits (72), Expect = 0.33
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 8 AGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
AG P R AG G I PG R P P A+ G P + G GP +Q
Sbjct: 1014 AGSPGERGAAGSGGP--IGPPG---RPGPQGPPGAAGEKGVPG---EKGPIGPTGRDGVQ 1065
Query: 68 GGSRRPLPAGPHPGLSAE 85
G P PAGP PG++ E
Sbjct: 1066 GPVGLPGPAGP-PGVAGE 1082
Score = 29.6 bits (65), Expect = 2.1
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 9 GGPTYRRPAGVSGTRRIRA-------PGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPV 61
G P PAG+ G R PG+ PS P GPAGS G +G
Sbjct: 973 GAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPP-------GPAGSP--GERGAA 1023
Query: 62 SSGRIQGGSRRPLPAGPHPGLSAE 85
SG G RP P GP PG + E
Sbjct: 1024 GSGGPIGPPGRPGPQGP-PGAAGE 1046
Score = 28.1 bits (61), Expect = 6.1
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 9 GGPTYRRPAGVSGTRRIRAP-GVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGRIQ 67
G P R PAG +G + P G + L P G P + G +GP +
Sbjct: 1180 GPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEK 1239
Query: 68 GGSRRPLPAGPHPG 81
G S +P GP PG
Sbjct: 1240 GESGQPGEPGP-PG 1252
Score = 28.1 bits (61), Expect = 6.1
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 9 GGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATG-------GGPAGSRDGGAQGPV 61
G P + G+ G PG P P PA G GGP G + G QGP
Sbjct: 1438 GSPGQKGEMGIPGASGPIGPGG----PPGLPGPAGPKGAKGATGPGGPKGEK--GVQGPP 1491
Query: 62 SSGRIQGGSRRPLP 75
G +PLP
Sbjct: 1492 GHPGPPGEVIQPLP 1505
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 36.6 bits (83), Expect = 0.017
Identities = 36/111 (32%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 2 GWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPA--GSRDGGAQG 59
G R + G T P T+ R PG+ R +P P A TG GPA G RD G G
Sbjct: 176 GARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWG 235
Query: 60 PVSSGRIQGGSRRPLPA-GPHPGLSAEV-------PPVPSR--RWLSGRGK 100
R+ PLP PH A + P PS WL + K
Sbjct: 236 RWVRRRVP----CPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNK 282
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 36.6 bits (83), Expect = 0.017
Identities = 42/140 (30%), Positives = 51/140 (36%), Gaps = 36/140 (25%)
Query: 4 RRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTP------------SCPNPASATGG---- 47
RR P +R A G R +R +LR+L P CP P+ G
Sbjct: 122 RRCGDSAPRHRPRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPR 181
Query: 48 -------GPAGSRDGGAQGPVSSGRIQGGSRRPLPAG-PHPGLS---------AEVPPVP 90
P G+R G Q P G S PLPA PH G+ A+ P
Sbjct: 182 RWRGHGLQPGGARAPGLQVPAPPGP---ASPAPLPARQPHKGVRPLGCCRGGRAQAAGQP 238
Query: 91 SRRWLSGRGKAGAVLAGTGV 110
L GRG+ AV AG V
Sbjct: 239 RGLCLPGRGRDRAVEAGDAV 258
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 36.6 bits (83), Expect = 0.017
Identities = 36/111 (32%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
Query: 2 GWRRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPA--GSRDGGAQG 59
G R + G T P T+ R PG+ R +P P A TG GPA G RD G G
Sbjct: 176 GARGTDPPGRTLPAPLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGRWG 235
Query: 60 PVSSGRIQGGSRRPLPA-GPHPGLSAEV-------PPVPSR--RWLSGRGK 100
R+ PLP PH A + P PS WL + K
Sbjct: 236 RWVRRRVP----CPLPGLRPHERAGAALLATCRGNAPTPSACLTWLESKNK 282
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 36.6 bits (83), Expect = 0.017
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 27/154 (17%)
Query: 4 RRLEAGGPTYRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSS 63
++ E G +R P R PG RL+ P+P + P G+ P
Sbjct: 166 KQREGGNGPWRAPV-------FRLPGARLRLSSQLPSPTTLPRAAPLTPYRPGSPSPRGH 218
Query: 64 GRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTGVYALLPEAGS-RLC 122
R++ SR P A G + + PVP+R G +++ PE G R C
Sbjct: 219 SRLR--SRPPTRAQLRVGAN-PLSPVPARL--------------RGCHSVRPEGGGVRSC 261
Query: 123 SLPGFCAAT-PH-PRRLSSLPLHAPAGQGELQAS 154
G C T PH P RL P+ LQ++
Sbjct: 262 RTLGCCPPTSPHQPPRLPVTPVPQSVALPSLQSA 295
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 36.2 bits (82), Expect = 0.023
Identities = 33/109 (30%), Positives = 37/109 (33%), Gaps = 15/109 (13%)
Query: 9 GGPT---YRRPAGVSGTRRIRAPGVLRRLTPSCPNPASATGGGPAGSRDGGAQGPVSSGR 65
GGP + P G G R + P R P P GGP G GP GR
Sbjct: 648 GGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGR 707
Query: 66 IQGGSRRPLP-----AGPHPGLSAEVPPVPSRRWLSGRGKAGAVLAGTG 109
G P P G G S PP +GRG G + G G
Sbjct: 708 GGRGGNEPPPPPPPFRGARGGRSGGGPP-------NGRGGPGGGMVGGG 749
>gi|40288197 GATA binding protein 6 [Homo sapiens]
Length = 595
Score = 36.2 bits (82), Expect = 0.023
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 37 SCPNPASATGGGPAGSRDGGAQGPVSSGRIQGGSRRPLPAGPHPGLSAEVPPVPSRRWLS 96
S +P +GGG AG GGA GP +G P P P ++ P +
Sbjct: 229 SADSPPYGSGGGAAG---GGAAGPGGAGSAAAHVSARFPYSPSPPMANGAAREPGGYAAA 285
Query: 97 GRGKAGAVLAGTGVYALLPEAGSRLCSLPGFCAATP 132
G G AG V G A + G R AA P
Sbjct: 286 GSGGAGGVSGGGSSLAAM---GGREPQYSSLSAARP 318
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,543,195
Number of Sequences: 37866
Number of extensions: 743483
Number of successful extensions: 5189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 484
Number of HSP's that attempted gapping in prelim test: 4477
Number of HSP's gapped (non-prelim): 1102
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.