Search of human proteins with 239741851

Search of human proteins with 239741851

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741851 PREDICTED: hypothetical protein XP_002342325 [Homo
sapiens]
         (133 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239741851 PREDICTED: hypothetical protein XP_002342325 [Homo ...   273   4e-74
gi|239753387 PREDICTED: hypothetical protein [Homo sapiens]           263   2e-71
gi|239747956 PREDICTED: hypothetical protein [Homo sapiens]           263   2e-71
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        41   3e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         35   0.023
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ...    33   0.067
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       33   0.087
gi|65301122 MARVEL domain containing 3 isoform 1 [Homo sapiens]        32   0.11 
gi|65293358 MARVEL domain containing 3 isoform 2 [Homo sapiens]        32   0.11 
gi|54792740 transmembrane and coiled-coil domain family 2 [Homo ...    32   0.19 
gi|25952087 potassium voltage-gated channel, shaker-related subf...    31   0.33 
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          30   0.43 
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]            30   0.43 
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]       30   0.43 
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho...    30   0.43 
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho...    30   0.43 
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho...    30   0.43 
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho...    30   0.43 
gi|169167103 PREDICTED: hypothetical protein [Homo sapiens]            30   0.57 
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]            30   0.57 
gi|169166257 PREDICTED: hypothetical protein [Homo sapiens]            30   0.57 
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                30   0.57 
gi|56676330 HP1-BP74 [Homo sapiens]                                    30   0.57 
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]        30   0.57 
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]        30   0.57 
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]      30   0.74 
gi|239741937 PREDICTED: hypothetical protein [Homo sapiens]            30   0.74 
gi|203098098 shroom family member 3 protein [Homo sapiens]             30   0.74 
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s...    30   0.74 
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s...    30   0.74 

>gi|239741851 PREDICTED: hypothetical protein XP_002342325 [Homo
           sapiens]
          Length = 133

 Score =  273 bits (697), Expect = 4e-74
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPH 60
           MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPH
Sbjct: 1   MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPH 60

Query: 61  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR 120
           LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR
Sbjct: 61  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR 120

Query: 121 IPAEKRNKQDSNS 133
           IPAEKRNKQDSNS
Sbjct: 121 IPAEKRNKQDSNS 133


>gi|239753387 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score =  263 bits (673), Expect = 2e-71
 Identities = 131/133 (98%), Positives = 131/133 (98%), Gaps = 2/133 (1%)

Query: 1   MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPH 60
           MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSP  H
Sbjct: 1   MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSP--H 58

Query: 61  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR 120
           LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR
Sbjct: 59  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR 118

Query: 121 IPAEKRNKQDSNS 133
           IPAEKRNKQDSNS
Sbjct: 119 IPAEKRNKQDSNS 131


>gi|239747956 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score =  263 bits (673), Expect = 2e-71
 Identities = 131/133 (98%), Positives = 131/133 (98%), Gaps = 2/133 (1%)

Query: 1   MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPH 60
           MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSP  H
Sbjct: 1   MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSP--H 58

Query: 61  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR 120
           LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR
Sbjct: 59  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR 118

Query: 121 IPAEKRNKQDSNS 133
           IPAEKRNKQDSNS
Sbjct: 119 IPAEKRNKQDSNS 131


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 18/136 (13%)

Query: 11   RRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPG----RRH 66
            R+R+ +  SS S ++  SSS +         + S+  +   ++  SPSP  PG     + 
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKP 2662

Query: 67   AHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP---PSSKEV----------R 113
            A   +      R R P RKP   L     ++ +P  RRRP   PS ++           R
Sbjct: 2663 ASPKKPPPGERRSRSP-RKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRR 2721

Query: 114  GDLGVGRIPAEKRNKQ 129
            G  G  R P+ KR ++
Sbjct: 2722 GQRGDSRSPSHKRRRE 2737



 Score = 28.1 bits (61), Expect = 2.2
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 11/133 (8%)

Query: 3   THPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDK--AAFHSPSPH 60
           +H ++   R R R++  +  G    S S  P   +   +  +  R+R +  A        
Sbjct: 562 SHSRSPATRGRSRSRTPARRGR---SRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSR 618

Query: 61  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR 120
            P RR +     +R   R R P R+       G   +  PA R R  S    R      R
Sbjct: 619 TPARRRSRTRSPVRRRSRSRSPARRS------GRSRSRTPARRGRSRSRTPARRGRSRSR 672

Query: 121 IPAEKRNKQDSNS 133
            PA +  +  S +
Sbjct: 673 TPARRSGRSRSRT 685


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 34.7 bits (78), Expect = 0.023
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 14/97 (14%)

Query: 36  EQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQ 95
           E+   ++ S  ++R +    SPS   P RRH       R+  R   P R+P+P      +
Sbjct: 272 EKTRPRSRSRSKSRSRTRSRSPSHTRPRRRH-------RSRSRSYSPRRRPSPRRRPSPR 324

Query: 96  ITTNPAPRRRPPSSKEVRGDLGVGRIPAEKRNKQDSN 132
             T   PRR PP  +  R      R P  +R +  ++
Sbjct: 325 RRT--PPRRMPPPPRHRR-----SRSPVRRRRRSSAS 354



 Score = 34.7 bits (78), Expect = 0.023
 Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 5/100 (5%)

Query: 12  RRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGLR 71
           RRQ  + SS SG++  S    P  ++   K     R R  +   S SP    R+     R
Sbjct: 486 RRQNQQSSSDSGSSSSSEDERP--KRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPR 543

Query: 72  GLRASGRERVPGRK---PAPGLSVGAQITTNPAPRRRPPS 108
           G R       P R+   P+P      + T  P PRRR PS
Sbjct: 544 GRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPS 583



 Score = 26.6 bits (57), Expect = 6.3
 Identities = 29/106 (27%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 5   PQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGR 64
           P     RRR R++  S S     S    P   +R          R +    S SP    R
Sbjct: 293 PSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHR---RSRSPVRRRR 349

Query: 65  RHAHGLRGLRASG---RERVPGRKPAPGLSVGAQITTNPAPRRRPP 107
           R +  L G  +S    R R P +KP    S   + T   +P   PP
Sbjct: 350 RSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPP 395



 Score = 26.2 bits (56), Expect = 8.2
 Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 29/138 (21%)

Query: 4   HPQALTVRRRQRAKLSSVSGNALGSSSVN---------------PCWEQRLRKAESADRA 48
           H ++ +  RR+R   +S+SG++  SSS                 P   +RL  + S  R 
Sbjct: 338 HRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRR 397

Query: 49  RDKAAFHSPSPHL---PGRRHAHGLRGLRASGRERV---PGR---KPAPGLSVGAQITTN 99
           R     H PSP     P  RH+   +    + + RV   PGR   K         + + +
Sbjct: 398 R-----HRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPS 452

Query: 100 PAPRRRPPSSKEVRGDLG 117
           PAP+ R     E   D G
Sbjct: 453 PAPKPRKVELSESEEDKG 470


>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
           sapiens]
          Length = 245

 Score = 33.1 bits (74), Expect = 0.067
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 41  KAESADRARDKAAFHSPSPHLPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNP 100
           +A   D  R++    S S      R+A G + LR + R R  GR+  P           P
Sbjct: 62  RAREEDGGRERRGGLSHSKDCNAARNARG-KHLRRTRRRRTLGRRCRP-----------P 109

Query: 101 APRRRPPSSKEVRGDLGVGRIPAEK 125
           APR RP   +++  D    RIPA +
Sbjct: 110 APRPRPRPRRKLALDQAATRIPAAR 134


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 32.7 bits (73), Expect = 0.087
 Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 21/94 (22%)

Query: 58  SPHLPGRRHAHGLRGLRAS----GRERVPGRKPAPGLSVGAQITTNP------------- 100
           S  LPG + A G RG   S    G +  PGR   PGL     +T NP             
Sbjct: 532 SDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLG 591

Query: 101 AP----RRRPPSSKEVRGDLGVGRIPAEKRNKQD 130
           AP    R  PP S  +RG  G   +P  K +  D
Sbjct: 592 APGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGD 625


>gi|65301122 MARVEL domain containing 3 isoform 1 [Homo sapiens]
          Length = 410

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 69  GLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIPAEKRNK 128
           G R  RA  RER PGR+P P      Q  T+  PR RP   +  R   G  R   ++  +
Sbjct: 6   GAREPRARPRERDPGRRPHPD-----QGRTHDRPRDRPGDPRRKRSSDGNRRRDGDRDPE 60

Query: 129 QD 130
           +D
Sbjct: 61  RD 62


>gi|65293358 MARVEL domain containing 3 isoform 2 [Homo sapiens]
          Length = 401

 Score = 32.3 bits (72), Expect = 0.11
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 69  GLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIPAEKRNK 128
           G R  RA  RER PGR+P P      Q  T+  PR RP   +  R   G  R   ++  +
Sbjct: 6   GAREPRARPRERDPGRRPHPD-----QGRTHDRPRDRPGDPRRKRSSDGNRRRDGDRDPE 60

Query: 129 QD 130
           +D
Sbjct: 61  RD 62


>gi|54792740 transmembrane and coiled-coil domain family 2 [Homo
           sapiens]
          Length = 709

 Score = 31.6 bits (70), Expect = 0.19
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 50  DKAAFHSPSPHLPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSS 109
           D A     + HLPG      LR    +G     G    P    GA    NP PR +PP  
Sbjct: 17  DGAGLEDAASHLPGA----DLRPGETTGANSAGG----PTSDAGAAAAPNPGPRSKPPDL 68

Query: 110 KEVR 113
           K+++
Sbjct: 69  KKIQ 72


>gi|25952087 potassium voltage-gated channel, shaker-related
           subfamily, member 5 [Homo sapiens]
          Length = 613

 Score = 30.8 bits (68), Expect = 0.33
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 82  PGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRI 121
           PG +P P L         P PRR PP  +E  GD G+G +
Sbjct: 73  PGVRPLPPLPEEL-----PRPRRPPPEDEEEEGDPGLGTV 107


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 11  RRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGL 70
           + RQR +  S +     S S +P  E+  R++ S  + RD+  + SPS     R+     
Sbjct: 529 KERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQS---- 584

Query: 71  RGLRASGRERVPGRKPAPGLSVG 93
              R+S  ER   R  +P    G
Sbjct: 585 ---RSSSEERDHSRSRSPNKQSG 604



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 11  RRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGL 70
           + RQ  +  S S       S +P  E++ R++ S ++ RD++   SPS     R H    
Sbjct: 505 KERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEE---REH---- 557

Query: 71  RGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIPAEKRNKQD 130
           R  R+  +ER   R  +P      + + + +  R    S+      G  R  A  + K  
Sbjct: 558 RQSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAH 617

Query: 131 SNS 133
           S S
Sbjct: 618 SRS 620


>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 252

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 18/105 (17%)

Query: 11  RRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGR---RHA 67
           RR  R  +++V G   G+  + PC         +  RA D+    SP PHLPG+   R  
Sbjct: 40  RRGPRRIVAAVGGGGRGAPLL-PCG--------AGGRALDRLDDPSPPPHLPGQSRPRPQ 90

Query: 68  HGLRGLRASGRERVPGRKPAPGLS----VGAQITTNPAPRRRPPS 108
              RG+  +  +   G  P  GL+      A    NPAP   PPS
Sbjct: 91  TFPRGVFPALGDAAQG--PEDGLARRKDTEAPTFPNPAPLLLPPS 133


>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
          Length = 237

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 27/99 (27%)

Query: 16  AKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGLRGLRA 75
           A LSSV+  +LGS+  +P           A R        SP+ HLPG R A        
Sbjct: 48  ALLSSVAEASLGSAPRSP-----------APREGPPPVLASPAGHLPGGRTARW-----C 91

Query: 76  SGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRG 114
           SGR R P  +P           + PAP    P S   RG
Sbjct: 92  SGRARRPPPQP-----------SRPAPPPPAPPSALPRG 119


>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 27/99 (27%)

Query: 16  AKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGLRGLRA 75
           A LSSV+  +LGS+  +P           A R        SP+ HLPG R A        
Sbjct: 31  ALLSSVAEASLGSAPRSP-----------APREGPPPVLASPAGHLPGGRTARW-----C 74

Query: 76  SGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRG 114
           SGR R P  +P           + PAP    P S   RG
Sbjct: 75  SGRARRPPPQP-----------SRPAPPPPAPPSALPRG 102


>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 27/99 (27%)

Query: 16  AKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGLRGLRA 75
           A LSSV+  +LGS+  +P           A R        SP+ HLPG R A        
Sbjct: 39  ALLSSVAEASLGSAPRSP-----------APREGPPPVLASPAGHLPGGRTARW-----C 82

Query: 76  SGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRG 114
           SGR R P  +P           + PAP    P S   RG
Sbjct: 83  SGRARRPPPQP-----------SRPAPPPPAPPSALPRG 110


>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 27/99 (27%)

Query: 16  AKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGLRGLRA 75
           A LSSV+  +LGS+  +P           A R        SP+ HLPG R A        
Sbjct: 31  ALLSSVAEASLGSAPRSP-----------APREGPPPVLASPAGHLPGGRTARW-----C 74

Query: 76  SGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRG 114
           SGR R P  +P           + PAP    P S   RG
Sbjct: 75  SGRARRPPPQP-----------SRPAPPPPAPPSALPRG 102


>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 30.4 bits (67), Expect = 0.43
 Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 27/99 (27%)

Query: 16  AKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGLRGLRA 75
           A LSSV+  +LGS+  +P           A R        SP+ HLPG R A        
Sbjct: 39  ALLSSVAEASLGSAPRSP-----------APREGPPPVLASPAGHLPGGRTARW-----C 82

Query: 76  SGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRG 114
           SGR R P  +P           + PAP    P S   RG
Sbjct: 83  SGRARRPPPQP-----------SRPAPPPPAPPSALPRG 110


>gi|169167103 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 185

 Score = 30.0 bits (66), Expect = 0.57
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 63  GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAP 102
           GR+ AHG   L+ + R    G  P PG ++ A +  NP P
Sbjct: 108 GRQWAHGSVPLQTTARLAALGIFPCPGETLSASLHCNPIP 147


>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 380

 Score = 30.0 bits (66), Expect = 0.57
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 39  LRKAESADRARDKAAFHS-PSPHLPGRRHAHGLRGLRASGRERVPG-RKPAPGLSVGAQI 96
           +R A  ++R R   A    P+P    +    G R      R   PG R+  P L   A  
Sbjct: 140 VRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASP 199

Query: 97  TTNPAPRRRPPSSKEVRGDLGVGR 120
              PAPRRR  + +   G  G GR
Sbjct: 200 PPRPAPRRRSTAPRHEGGRPGRGR 223


>gi|169166257 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 185

 Score = 30.0 bits (66), Expect = 0.57
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 63  GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAP 102
           GR+ AHG   L+ + R    G  P PG ++ A +  NP P
Sbjct: 108 GRQWAHGSVPLQTTARLAALGIFPCPGETLSASLHCNPIP 147


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 30.0 bits (66), Expect = 0.57
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 62  PGRRHAHGLRG------LRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP--PSSKEVR 113
           PG R   GLRG      L       +PG+  A G+         P P+  P  P  + ++
Sbjct: 146 PGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLK 205

Query: 114 GDLGVGR 120
           GD GVG+
Sbjct: 206 GDNGVGQ 212


>gi|56676330 HP1-BP74 [Homo sapiens]
          Length = 553

 Score = 30.0 bits (66), Expect = 0.57
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 72  GLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSK 110
           G  AS ++R  G KPAP +S   +    P P++ PP +K
Sbjct: 467 GKAASVKQR--GSKPAPKVSAAQRGKARPLPKKAPPKAK 503


>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 30.0 bits (66), Expect = 0.57
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 61  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP----PSSKEVRGDL 116
           +PG +   G+ G+   G++ +PG+   PG      +   P P   P    P     +GD 
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDR 362

Query: 117 GVGRIP 122
           G+G +P
Sbjct: 363 GMGGVP 368


>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
          Length = 744

 Score = 30.0 bits (66), Expect = 0.57
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 61  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP----PSSKEVRGDL 116
           +PG +   G+ G+   G++ +PG+   PG      +   P P   P    P     +GD 
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDR 362

Query: 117 GVGRIP 122
           G+G +P
Sbjct: 363 GMGGVP 368


>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
          Length = 1073

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 56  SPSPHLP-GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRG 114
           SP P  P G   A GL G    G++  PG + +PGL  G   T         P S   RG
Sbjct: 444 SPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLP-GPLGTKGDRGAPGIPGSPGSRG 502

Query: 115 DLGVG 119
           D G+G
Sbjct: 503 DPGIG 507


>gi|239741937 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 167

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 58  SPH---LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNP-APRRRPPSSKEVR 113
           +PH   LPG+RH  G RG  A+   +   R P P           P  PR+RP      R
Sbjct: 72  APHGVALPGQRHLGGPRGGAAASAGQGANR-PTPRTRGSRSTPQQPRGPRQRPTGQHRRR 130

Query: 114 -GDLGV 118
            GDLG+
Sbjct: 131 DGDLGL 136


>gi|203098098 shroom family member 3 protein [Homo sapiens]
          Length = 1996

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 26   LGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPHLPGRRHAHGLRGLRASGRERVPGRK 85
            LG+   +  W  R   A    R+ + +A  S SPH P  RH+        +  E    R 
Sbjct: 948  LGAPVASRSWRPRPSSAHVGLRSPEASA--SASPHTPRERHS-------VTPAEGDLARP 998

Query: 86   PAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGV 118
              P    GA+    P  ++R  S  E   ++G+
Sbjct: 999  VPPAARRGARRRLTPEQKKRSYSEPEKMNEVGI 1031


>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
           sapiens]
          Length = 1424

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 56  SPSPHLPGRRHAHGLRGLRASGRER------VPGRKPAPGLSVGAQITTNPAP------- 102
           SP    PG R A G  GL+ S  ER        G   +PG +    +  +P P       
Sbjct: 382 SPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDI 441

Query: 103 --RRRPPSSKEVRGDLGVGRIP 122
             R+ PP    + G LG   IP
Sbjct: 442 VFRKGPPGDHGLPGYLGSPGIP 463


>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
           sapiens]
          Length = 1494

 Score = 29.6 bits (65), Expect = 0.74
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 56  SPSPHLPGRRHAHGLRGLRASGRER------VPGRKPAPGLSVGAQITTNPAP------- 102
           SP    PG R A G  GL+ S  ER        G   +PG +    +  +P P       
Sbjct: 382 SPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDI 441

Query: 103 --RRRPPSSKEVRGDLGVGRIP 122
             R+ PP    + G LG   IP
Sbjct: 442 VFRKGPPGDHGLPGYLGSPGIP 463


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,890,256
Number of Sequences: 37866
Number of extensions: 310482
Number of successful extensions: 1441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 1329
Number of HSP's gapped (non-prelim): 313
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.