Guide to the Human Genome
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Name: LOC100128747 Sequence: fasta or formatted (185aa) NCBI GI: 169166257
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {131aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         19           2
 C cysteine            3.2          6           1
 D aspartate           3.2          6           1
 E glutamate           3.8          7           1
 F phenylalanine       1.6          3           1
 G glycine            11.4         21           2
 H histidine           3.2          6           1
 I isoleucine          2.7          5           2
 K lysine              1.1          2           1
 L leucine            11.4         21           2
 M methionine          1.6          3           1
 N asparagine          0.5          1           1
 P proline            11.9         22           2
 Q glutamine           4.9          9           1
 R arginine            6.5         12           2
 S serine             10.8         20           3
 T threonine           4.9          9           2
 V valine              4.9          9           2
 W tryptophan          1.6          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129002          0.981   PREDICTED: hypothetical protein 
LOC100128747          0.519   PREDICTED: hypothetical protein 
TTBK1                 0.050   tau tubulin kinase 1 
TBC1D10B              0.033   TBC1 domain family, member 10B 
RECQL4                0.025   RecQ protein-like 4 
HCN4                  0.022   hyperpolarization activated cyclic nucleotide-gated p...
PRR18                 0.022   proline rich region 18 
LOC100291609          0.019   PREDICTED: hypothetical protein XP_002346061 
LOC100292637          0.019   PREDICTED: hypothetical protein 
LOC100288092          0.019   PREDICTED: hypothetical protein 
RUSC2                 0.019   RUN and SH3 domain containing 2 
RUSC2                 0.019   RUN and SH3 domain containing 2 
BTBD2                 0.019   BTB (POZ) domain containing 2 
SETD1A                0.017   SET domain containing 1A 
MAST4                 0.017   microtubule associated serine/threonine kinase fami...
COL6A6                0.017   collagen type VI alpha 6 
ZFHX2                 0.017   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.017   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.017   PREDICTED: zinc finger homeobox 2 
LOC100133305          0.017   PREDICTED: hypothetical protein 
LOC100133305          0.017   PREDICTED: hypothetical protein 
COL7A1                0.017   alpha 1 type VII collagen precursor 
DMRTA2                0.014   DMRT-like family A2 
LOC100293237          0.014   PREDICTED: hypothetical protein 
LOC100290982          0.014   PREDICTED: hypothetical protein XP_002346864 
LOC100287673          0.014   PREDICTED: hypothetical protein XP_002342707 
LOC100288092          0.014   PREDICTED: hypothetical protein XP_002342325 
COL17A1               0.014   alpha 1 type XVII collagen 
MRC2                  0.014   mannose receptor, C type 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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