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Search of human proteins with 116256340
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
(1205 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 2448 0.0
gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens] 2438 0.0
gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens] 2438 0.0
gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens] 2347 0.0
gi|116256336 SEC31 homolog A isoform 4 [Homo sapiens] 1874 0.0
gi|14149696 SEC31 homolog B [Homo sapiens] 1060 0.0
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 73 1e-12
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 72 3e-12
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 66 2e-10
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 66 2e-10
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 66 2e-10
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 65 3e-10
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 65 3e-10
gi|171543895 ataxin 2 [Homo sapiens] 65 5e-10
gi|54860079 nadrin isoform 1 [Homo sapiens] 65 5e-10
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 64 9e-10
gi|54860105 nadrin isoform 2 [Homo sapiens] 64 9e-10
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 62 3e-09
gi|58331266 WD repeat domain 59 [Homo sapiens] 61 6e-09
gi|50345997 E1A binding protein p300 [Homo sapiens] 59 2e-08
gi|207029439 retinoblastoma binding protein 4 isoform c [Homo sa... 59 3e-08
gi|207029415 retinoblastoma binding protein 4 isoform b [Homo sa... 59 3e-08
gi|5032027 retinoblastoma binding protein 4 isoform a [Homo sapi... 59 3e-08
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 59 3e-08
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 59 3e-08
gi|18677720 WD repeat and SOCS box-containing 1 isoform 1 [Homo ... 59 4e-08
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 58 6e-08
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 58 6e-08
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 57 1e-07
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 57 1e-07
>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
Length = 1205
Score = 2448 bits (6344), Expect = 0.0
Identities = 1205/1205 (100%), Positives = 1205/1205 (100%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA
Sbjct: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
Query: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA
Sbjct: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
Query: 961 PPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQM 1020
PPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQM
Sbjct: 961 PPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQM 1020
Query: 1021 LQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNT 1080
LQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNT
Sbjct: 1021 LQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNT 1080
Query: 1081 FQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLEFLYD 1140
FQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLEFLYD
Sbjct: 1081 FQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLEFLYD 1140
Query: 1141 KLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSETSAFMPVLKVVLTQA 1200
KLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSETSAFMPVLKVVLTQA
Sbjct: 1141 KLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSETSAFMPVLKVVLTQA 1200
Query: 1201 NKLGV 1205
NKLGV
Sbjct: 1201 NKLGV 1205
>gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 2438 bits (6318), Expect = 0.0
Identities = 1205/1220 (98%), Positives = 1205/1220 (98%), Gaps = 15/1220 (1%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA
Sbjct: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
Query: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA
Sbjct: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
Query: 961 PPSSSAYALPPGT---------------TGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1005
PPSSSAYALPPGT TGPQNGWNDPPALNRVPKKKKMPENFMPPVPI
Sbjct: 961 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1020
Query: 1006 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1065
TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS
Sbjct: 1021 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1080
Query: 1066 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1125
KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK
Sbjct: 1081 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1140
Query: 1126 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1185
RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE
Sbjct: 1141 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1200
Query: 1186 TSAFMPVLKVVLTQANKLGV 1205
TSAFMPVLKVVLTQANKLGV
Sbjct: 1201 TSAFMPVLKVVLTQANKLGV 1220
>gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 2438 bits (6318), Expect = 0.0
Identities = 1205/1220 (98%), Positives = 1205/1220 (98%), Gaps = 15/1220 (1%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA
Sbjct: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
Query: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA
Sbjct: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
Query: 961 PPSSSAYALPPGT---------------TGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1005
PPSSSAYALPPGT TGPQNGWNDPPALNRVPKKKKMPENFMPPVPI
Sbjct: 961 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1020
Query: 1006 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1065
TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS
Sbjct: 1021 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1080
Query: 1066 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1125
KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK
Sbjct: 1081 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1140
Query: 1126 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1185
RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE
Sbjct: 1141 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1200
Query: 1186 TSAFMPVLKVVLTQANKLGV 1205
TSAFMPVLKVVLTQANKLGV
Sbjct: 1201 TSAFMPVLKVVLTQANKLGV 1220
>gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]
Length = 1181
Score = 2347 bits (6081), Expect = 0.0
Identities = 1166/1220 (95%), Positives = 1166/1220 (95%), Gaps = 54/1220 (4%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKK
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKK------------------------------------- 503
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
HIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 504 --HIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 561
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 562 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 621
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 622 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 681
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 682 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 741
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 742 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 801
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA
Sbjct: 802 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 861
Query: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA
Sbjct: 862 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 921
Query: 961 PPSSSAYALPPGT---------------TGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1005
PPSSSAYALPPGT TGPQNGWNDPPALNRVPKKKKMPENFMPPVPI
Sbjct: 922 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 981
Query: 1006 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1065
TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS
Sbjct: 982 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1041
Query: 1066 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1125
KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK
Sbjct: 1042 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1101
Query: 1126 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1185
RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE
Sbjct: 1102 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1161
Query: 1186 TSAFMPVLKVVLTQANKLGV 1205
TSAFMPVLKVVLTQANKLGV
Sbjct: 1162 TSAFMPVLKVVLTQANKLGV 1181
>gi|116256336 SEC31 homolog A isoform 4 [Homo sapiens]
Length = 1106
Score = 1874 bits (4854), Expect = 0.0
Identities = 985/1207 (81%), Positives = 1003/1207 (83%), Gaps = 103/1207 (8%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYR-PQQPV 899
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQ Q P A+ R P++
Sbjct: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQRPQNGWNDP-----PALNRVPKKKK 895
Query: 900 APPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTS-SPATSFPPPPSSGASFQHGGP 958
P N P P S + G Q Q Q S+P S +SFP P G HG
Sbjct: 896 MP--ENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHG-- 951
Query: 959 GAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQS 1018
P G TG MP +F P +P G P
Sbjct: 952 --------VQQPLGQTG-------------------MPPSFSKPNIEGAP-----GAPIG 979
Query: 1019 QMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIG 1078
Q S P ++ P HL K E
Sbjct: 980 NTFQHVQSLPTKKITKKPIPDEHL---------------------ILKTTFE-------- 1010
Query: 1079 NTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLEFL 1138
+ Q S T TK+ + D L+ ++ L ++ L
Sbjct: 1011 DLIQRCLSSATDPQTKRKLDDASKRLEFLYDKLREQTL---------------------- 1048
Query: 1139 YDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSETSAFMPVLKVVLT 1198
SPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSETSAFMPVLKVVLT
Sbjct: 1049 ---------SPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSETSAFMPVLKVVLT 1099
Query: 1199 QANKLGV 1205
QANKLGV
Sbjct: 1100 QANKLGV 1106
>gi|14149696 SEC31 homolog B [Homo sapiens]
Length = 1179
Score = 1060 bits (2741), Expect = 0.0
Identities = 586/1245 (47%), Positives = 779/1245 (62%), Gaps = 110/1245 (8%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKE++R A+QAWSPA +P+YLATGTSAQQLD++FSTN +LEIFE+D DPSLD+K
Sbjct: 1 MKLKELERPAVQAWSPASQYPLYLATGTSAQQLDSSFSTNGTLEIFEVDFRDPSLDLKHR 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
S+ R+HKL+WG + + SGV++ GG+NG +ILY+ + I++ KE VIAQ K
Sbjct: 61 GVLSALSRFHKLVWGSFGSGLL-ESSGVIVGGGDNGMLILYNVTHILSSGKEPVIAQKQK 119
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQ-PPEDISCIAWNRQ 179
HTG VRALD+N FQ NL+ASGA++SEI+IWDLNN PMT G+K+Q PPEDI ++WNRQ
Sbjct: 120 HTGAVRALDLNPFQGNLLASGASDSEIFIWDLNNLNVPMTLGSKSQQPPEDIKALSWNRQ 179
Query: 180 VQHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLP 239
QHIL+SA PSG+A VWDLRKNEPIIKVSDHSNRMHCSGLAWHPD+ATQ+VL SEDDRLP
Sbjct: 180 AQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDIATQLVLCSEDDRLP 239
Query: 240 VIQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYEL 299
VIQ+WDLRFASSPL+VLE+H+RGIL+++WS AD ELLL+ KD++ILC N + EV+Y+L
Sbjct: 240 VIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELLLTSAKDSQILCRNLGSSEVVYKL 299
Query: 300 PTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPF 359
PT + WCFD+QWCPR+P+V SAASF+G IS+YS+MG S + +Q DK+SSSF
Sbjct: 300 PTQSSWCFDVQWCPRDPSVFSAASFNGWISLYSVMGRSWEVQHMRQADKISSSFSK---- 355
Query: 360 GTGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAE 419
GQPLPPLQ+P+Q AQ ++ PLKKPPKWIRRP G SF+FGGKLVTF P+H
Sbjct: 356 --GQPLPPLQVPEQVAQAPLIPPLKKPPKWIRRPTGVSFAFGGKLVTFGLPSTPAH--LV 411
Query: 420 QQQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKV 479
Q VFISQV TE EFL RS +LQ+A+ S +NYCQ K + + EK +W FLKV
Sbjct: 412 PQPCPRLVFISQVTTESEFLMRSAELQEALGSGNLLNYCQNKSQQALLQSEKMLWQFLKV 471
Query: 480 NFEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQL 539
E DSR K+L+LLGY K++L KK+A L G + + SD +++ ++
Sbjct: 472 TLEQDSRMKFLKLLGYSKDELQKKVATWLKSDVGLGESPQPKGNDLNSDRQQAFCSQAS- 530
Query: 540 LGEHIKEEKEES-----EFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNR 594
+H +E S E +P + + I ++ DIDGL++QALL G AV+LCL + R
Sbjct: 531 --KHTTKEASASSAFFDELVPQNMTPWEIPITKDIDGLLSQALLLGELGPAVELCLKEER 588
Query: 595 MADAIILAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALA 654
ADAIILA AGG +LL +TQ++Y AK ++KI+ L+ VV KNWK++V +C LKNWREALA
Sbjct: 589 FADAIILAQAGGTDLLKQTQERYLAKKKTKISSLLACVVQKNWKDVVCTCSLKNWREALA 648
Query: 655 AVLTYAKPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHP 714
+LTY+ ++F LCD+LGTR+E EG L ++A LCY+C+G+VE+LV CW K P
Sbjct: 649 LLLTYSGTEKFPELCDMLGTRMEQEGSRALTSEARLCYVCSGSVERLVECWAKCHQALSP 708
Query: 715 LSLQDLIEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNT 774
++LQDL+EKV++L ++++ + + G +++QYANLLAAQGS+A A++FLP +
Sbjct: 709 MALQDLMEKVMVLNRSLEQLRGPHGVSPGPATTYRVTQYANLLAAQGSLATAMSFLPRDC 768
Query: 775 NQPNIMQLRDRLCRAQGEPVAGHESPKIPYEK---------QQLPKGRPGPVAGHH---- 821
QP + QLRDRL AQG V G +SP P+ + ++ R G H
Sbjct: 769 AQPPVQQLRDRLFHAQGSAVLGQQSPPFPFPRIVVGATLHSKETSSYRLGSQPSHQVPTP 828
Query: 822 -QMPRVQTQQYYPH----GENPPPPGFIMHGNVN------PNAAGQLPTSPGHMHTQVPP 870
PRV T Q P +P P N++ P A LP SPG P
Sbjct: 829 SPRPRVFTPQSSPAMPLAPSHPSPYQGPRTQNISDYRAPGPQAIQPLPLSPGVRPASSQP 888
Query: 871 Y---------PQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTG 921
P P + P P GS + + P S + P TP +
Sbjct: 889 QLLGGQRVQVPNPVGFPGTWPLP----GSPLPMACPGIMRPGSTSLPETPRLFPLLPLRP 944
Query: 922 QSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSS---SAYALPPGTTGPQN 978
H T +P SFP P + G PGAP SS + L P GPQ+
Sbjct: 945 LGPGRMVSH-----TPAPPASFPVP------YLPGDPGAPCSSVLPTTGILTPHP-GPQD 992
Query: 979 GWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFP 1038
W + PA ++ K+PE FMPP PIT+P+M+ + Q + PS P P+SS S P
Sbjct: 993 SWKEAPAPRGNLQRNKLPETFMPPAPITAPVMSLTPELQGIL----PSQP-PVSSVSHAP 1047
Query: 1039 QPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIP 1098
PG P G +Q LP +K+ +K +P
Sbjct: 1048 ----------------------------------PGVP-GELSLQLQHLPPEKMERKELP 1072
Query: 1099 DEHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLEFLYDKLREQTLSPTITSGLHNI 1158
EH LK++FE L+QRC SATD +TKRKL++A++RLE+LY+KL E TLSP + +GLH +
Sbjct: 1073 PEHQSLKSSFEALLQRCSLSATDLKTKRKLEEAAQRLEYLYEKLCEGTLSPHVVAGLHEV 1132
Query: 1159 ARSIETRNYSEGLTMHTHIVSTSNFSETSAFMPVLKVVLTQANKL 1203
AR ++ ++ +GL +H + S+FSE S+FMP+LK VL A+KL
Sbjct: 1133 ARCVDAGSFEQGLAVHAQVAGCSSFSEVSSFMPILKAVLIIAHKL 1177
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 73.2 bits (178), Expect = 1e-12
Identities = 78/294 (26%), Positives = 104/294 (35%), Gaps = 47/294 (15%)
Query: 806 KQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMH 865
+QQ P+G Q+P P G PPP G + N + PG M
Sbjct: 295 QQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGTMTANQGWKKAPLPGPMQ 354
Query: 866 TQVPPYPQ----PQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTG 921
Q+ P P P PYPFG+ QQ S A+ N P +S+ +T
Sbjct: 355 QQLQARPSLATVQTPSHPPPPYPFGS--------QQ-----ASQAHTNFPQMSNPGQFTA 401
Query: 922 --QSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGPQNG 979
L + +P P + P SS +SFQ G P + P+ + G PQN
Sbjct: 402 PQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPPQN- 460
Query: 980 WNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGD-----PQSQMLQQQPSAPVPLS-- 1032
+P+ F PV +SP NP+ P ++QQQP P S
Sbjct: 461 -------------NPLPQGFQQPV--SSPGRNPMVQQGNVPPNFMVMQQQPPNQGPQSLH 505
Query: 1033 -SQSSFPQPHLPGGQPFHGVQQPLGQTGMPPS--FSKPNIEGAPGAPIGNTFQH 1083
P+ PG G P G PS + P GAP QH
Sbjct: 506 PGLGGMPKRLPPGFSA--GQANPNFMQGQVPSTTATTPGNSGAPQLQANQNVQH 557
Score = 40.4 bits (93), Expect = 0.010
Identities = 54/228 (23%), Positives = 84/228 (36%), Gaps = 37/228 (16%)
Query: 800 PKIPYEK---QQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPG-------------- 842
P P E+ QQ+P VA Q P+ Q Q P + PPPP
Sbjct: 974 PSQPVEQRPLQQMPPQLMQHVAPPPQPPQQQPQPQLPQQQQPPPPSQPQSQQQQQQQQQM 1033
Query: 843 -FIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQP-AQPYPFGTGGS--AMYRPQQP 898
++ +P + +LP S +P P P +Q P GS M Q P
Sbjct: 1034 MMMLMMQQDPKSV-RLPVSQN-------VHPPRGPLNPDSQRMPMQQSGSVPVMVSLQGP 1085
Query: 899 VAPPTSNAYPNTPY-ISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGG 957
+ P S P +++ + +Y Q +P+SSP P + S
Sbjct: 1086 ASVPPSPDKQRMPMPVNTPLGSNSRKMVY--QESPQNPSSSPLAEMASLPEASGSEAPSV 1143
Query: 958 PGAPPSSSAYALPPGT----TGPQNGWNDPPALNRVPKKKKMPENFMP 1001
PG P + ++ + P TGP+ G P + + ++ P N +P
Sbjct: 1144 PGGPNNMPSHVVLPQNQLMMTGPKPG-PSPLSATQGATPQQPPVNSLP 1190
Score = 38.5 bits (88), Expect = 0.039
Identities = 81/378 (21%), Positives = 126/378 (33%), Gaps = 67/378 (17%)
Query: 762 SIAAALAFLPDNTNQPNI--------MQLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGR 813
S+AA + DN N+ Q R + + V E + E Q G+
Sbjct: 1404 SVAAVGGVVEDNKESLNVPQDSDCQNSQSRKEQVNIELKAVPAQEVKMVVPEDQSKKDGQ 1463
Query: 814 PGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQV-PPYP 872
P + +++P V+ + P + N A PG +V PP
Sbjct: 1464 P---SDPNKLPSVEENKNLVSPAMREAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPPVV 1520
Query: 873 QPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNT---PYISSASSYTGQSQLYAAQ 929
+ + A P S+ P + P SN ++ P +S SS S
Sbjct: 1521 SGEDLKKASVIPTLQDLSSSKEPSNSLNLPHSNELCSSLVHPELSEVSSNVAPS----IP 1576
Query: 930 HQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPG---------TTGPQNG- 979
S P SS + S P PP+ F P ++++ ALP T P G
Sbjct: 1577 PVMSRPVSSSSISTPLPPNQITVFVTSNPITTSANTSAALPTHLQSALMSTVVTMPNAGS 1636
Query: 980 ------------------WNDPPALNR---VPKKKKMPENFMPPVPITS---------PI 1009
+ P +N + K + +P P+T+ +
Sbjct: 1637 KVMVSEGQSAAQSNARPQFITPVFINSSSIIQVMKGSQPSTIPAAPLTTNSGLMPPSVAV 1696
Query: 1010 MNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNI 1069
+ PL PQ+ SAPVP ++ SS P P++ G+P L P P
Sbjct: 1697 VGPLHIPQNIKFS---SAPVPPNALSSSPAPNIQTGRPL-----VLSSRATPVQLPSPPC 1748
Query: 1070 EGAPGAPIGNTFQHVQSL 1087
+P P Q V+ L
Sbjct: 1749 TSSPVVPSHPPVQQVKEL 1766
Score = 33.9 bits (76), Expect = 0.96
Identities = 69/285 (24%), Positives = 87/285 (30%), Gaps = 54/285 (18%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHG----ENPPPPGFIMHGNVNPNAAGQLPTSPGHMH 865
PK + P + + T P G + PP PG G N+ +LP
Sbjct: 914 PKKKKPPRKKKNSQQDLNTPDTRPAGLEEADQPPLPG--EQGINLDNSGPKLP----EFS 967
Query: 866 TQVPPYP-QPQPYQPAQPYPFGTGGSAMYRPQ--QPVAPPTSNAYPNTPYISSASSYTGQ 922
+ P YP QP +P Q P PQ Q VAPP P P
Sbjct: 968 NRPPGYPSQPVEQRPLQQMP----------PQLMQHVAPP-----PQPP----------- 1001
Query: 923 SQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYAL--PPGTTGPQNGW 980
Q P PPPPS S Q P P +
Sbjct: 1002 --------QQQPQPQLPQQQQPPPPSQPQSQQQQQQQQQMMMMLMMQQDPKSVRLPVSQN 1053
Query: 981 NDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQP-SAPVPLSSQSSFPQ 1039
PP P ++MP VP+ + P P S Q+ P PL S S +
Sbjct: 1054 VHPPRGPLNPDSQRMPMQQSGSVPVMVSLQGPASVPPSPDKQRMPMPVNTPLGSNS---R 1110
Query: 1040 PHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHV 1084
+ P + PL + P S PG P N HV
Sbjct: 1111 KMVYQESPQNPSSSPLAEMASLPEASGSEAPSVPGGP-NNMPSHV 1154
Score = 32.3 bits (72), Expect = 2.8
Identities = 40/142 (28%), Positives = 54/142 (38%), Gaps = 20/142 (14%)
Query: 937 SSPATSFPPPPSS-GASFQHGGPGAP-------PSSSAYALPPGTTGPQNGWNDPPALNR 988
++PAT PP + +S GP P+S + A+ P +G P+ +
Sbjct: 177 NNPATVMIPPGGNVSSSMMAPGPNPELQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSL 236
Query: 989 VPKKKKMPENFMPPVPITSPIMNPLGDP--QSQMLQQQPSAPVPLSSQSSFPQPHLPGGQ 1046
P P + M PV + MNP P Q Q QQQ Q Q L
Sbjct: 237 AP-----PHHPMQPVSVNRQ-MNPANFPQLQQQQQQQQQQQQQQQQQQQQQQQQQLQARP 290
Query: 1047 P-FHGVQQPLGQTGMPPSFSKP 1067
P H QQP G+ P F+ P
Sbjct: 291 PQQHQQQQP---QGIRPQFTAP 309
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 72.0 bits (175), Expect = 3e-12
Identities = 73/274 (26%), Positives = 99/274 (36%), Gaps = 53/274 (19%)
Query: 834 HGENPPPPGFIMHGNVNPNAAGQ--------LPTSPGHMHTQVPPYPQPQPYQPA--QPY 883
H PPPG ++ N P G +P P H Q PP QP P QP QP
Sbjct: 29 HDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPP 88
Query: 884 PFGTGGSAMYRPQQPVAPPTSNAYP-------NTPYISSASSYTGQSQLYAAQHQASSPT 936
P ++ QQP PP ++ P P + SA + + + P
Sbjct: 89 PH----PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPG 144
Query: 937 SSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMP 996
S P + PPP+ ++ P PPSS PP GP PP VP P
Sbjct: 145 SGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP------PPPPAAVPGPGPGP 198
Query: 997 ENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVP-----LSSQSSFPQ-PHLPGGQPFHG 1050
+ P G P+ + P P P LS+ P+ PH GG+P G
Sbjct: 199 KQGPGP-----------GGPKG---GKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGG 244
Query: 1051 VQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHV 1084
Q PP + + PG P G + + +
Sbjct: 245 RQH------HPPYHQQHHQGPPPGGPGGRSEEKI 272
Score = 30.8 bits (68), Expect = 8.1
Identities = 43/187 (22%), Positives = 52/187 (27%), Gaps = 14/187 (7%)
Query: 797 HESPKIPYEKQQL-----PKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNP 851
H+ P P QQ P+ PV P P + PP G
Sbjct: 85 HQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPG 144
Query: 852 NAAGQLPTSPGHMHTQVPPYPQPQPYQPAQP-YPFGTGGSAMYRPQQPVAPPTSNAYPNT 910
+ G PT P + + P P P P P P GG P P A P P
Sbjct: 145 SGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGP----PPPPAAVPGPGPGPKQ 200
Query: 911 PYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGG-PGAPPSSSAYAL 969
++ P S P PP G GG PP +
Sbjct: 201 ---GPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQ 257
Query: 970 PPGTTGP 976
P GP
Sbjct: 258 GPPPGGP 264
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 65.9 bits (159), Expect = 2e-10
Identities = 100/349 (28%), Positives = 133/349 (38%), Gaps = 63/349 (18%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQY-YPHGENPPPPGFIMHGN 848
QG P A ++P P Q P P P Q P + Q+ PH PPP H
Sbjct: 222 QGSPTAS-QAPNQP----QAPTA-PVPHTHIQQAPALHPQRPPSPH----PPPHPSPHPP 271
Query: 849 VNP--NAAGQLPTSPGH----MHTQVPPYPQ-----PQPYQPAQPYPFGTGGSAMYRPQQ 897
+ P +AGQ P++P H +H Q PP P P P P PFG A + Q
Sbjct: 272 LQPLTGSAGQ-PSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQAS-QGQA 329
Query: 898 PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGG 957
P+ + AYP+T AS QSQ + Q P PPP++
Sbjct: 330 PLGTSPAAAYPHTSLQLPASQSALQSQ-QPPREQPLPPAPLAMPHIKPPPTTPIP----- 383
Query: 958 PGAPPSSSAYALPPGTTGPQN-----GWNDPPALNRV--------PKKKKMPENFMPPV- 1003
P+ A+ PP +GP PPAL + P P MP
Sbjct: 384 --QLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 441
Query: 1004 PITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQ------PHLPGGQPFHGVQQP-LG 1056
P+ S P G QSQ L P++ P PQ P +PGG P + P
Sbjct: 442 PLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPP--PITPPTCP 499
Query: 1057 QTGMPP----SFSKPNIEGAPGAPIGNTFQHVQS--LPTKKITKKPIPD 1099
T PP + ++P GA A G + S LPT +I ++ + D
Sbjct: 500 STSTPPAGPGTSAQPPCSGA--AASGGSIAGGSSCPLPTVQIKEEALDD 546
Score = 55.5 bits (132), Expect = 3e-07
Identities = 72/296 (24%), Positives = 103/296 (34%), Gaps = 56/296 (18%)
Query: 840 PPGFIMHGNVNPNAAGQLPT-SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQP 898
P G + P QLPT P T VPP P T A +PQ P
Sbjct: 190 PTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSP------------TASQAPNQPQAP 237
Query: 899 VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP-------TSSPATSFPP-----P 946
AP P + + + + H P S+P+ + PP P
Sbjct: 238 TAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 297
Query: 947 P-----SSGASFQHGGP----GAPPSSSAYALPPGTTG----PQNGWNDPPALNRVPKKK 993
P +G QH GP G PP +S P GT+ P P + + + ++
Sbjct: 298 PGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQ 357
Query: 994 KMPENFMPPVPITSPIMNP--------LGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGG 1045
E +PP P+ P + P L PQ+ S P P S ++ P P P
Sbjct: 358 PPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPP--PAL 415
Query: 1046 QPFHGVQQPLGQTGMPPSF-----SKPNIEGAPGAPIGNTFQHVQSLPTKKITKKP 1096
+P + + PP S+P + +P P G T Q+LP + P
Sbjct: 416 KPLSSLSTHHPPSAHPPPLQLMPQSQP-LPSSPAQPPGLT--QSQNLPPPPASHPP 468
Score = 51.2 bits (121), Expect = 6e-06
Identities = 63/234 (26%), Positives = 94/234 (40%), Gaps = 37/234 (15%)
Query: 789 AQGEPVAGHESPKIPYEKQQLPK-GRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ +P + P P+ Q P PGP P+ +Q P G +P
Sbjct: 286 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQA-SQGQAPLGTSPAA------- 337
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQP-AQPYPFGTGGSAMYRPQQPVAP-PTSN 905
P+ + QLP S + +Q PP QP P P A P+ P P+ P
Sbjct: 338 -AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPH-------IKPPPTTPIPQLPAPQ 389
Query: 906 AYPNTPYISSASSYTGQSQL---YAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
A+ + P++S S ++ + L A + +S T P ++ PPP P + P
Sbjct: 390 AHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQL-------MPQSQP 442
Query: 963 SSSAYALPPGTTGPQN-----GWNDPPALNRV-PKKKKMPENFMP--PVPITSP 1008
S+ A PPG T QN + P L++V P+ F+P P PIT P
Sbjct: 443 LPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPP 496
Score = 47.0 bits (110), Expect = 1e-04
Identities = 61/242 (25%), Positives = 82/242 (33%), Gaps = 50/242 (20%)
Query: 903 TSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
TS + P+ S S + Q Q+ QA P T P PSS P P
Sbjct: 157 TSPSIPSPQDNESDSDSSAQQQML----QAQPPALQAPTGVTPAPSSAPPGTPQLPTPGP 212
Query: 963 SSSAYALPP-GTTGPQNGWNDPPA---------LNRVPK--KKKMPENFMPPVPITSPIM 1010
+ SA A+PP G+ N P A + + P ++ P PP P P +
Sbjct: 213 TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPL 272
Query: 1011 NPL----GDP---------------------QSQMLQQQPSAPVPLSSQSSFPQPHLPGG 1045
PL G P Q+ L Q P P P Q P G
Sbjct: 273 QPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLG 332
Query: 1046 ------QPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPD 1099
P +Q P Q+ + S P + P AP+ H++ PT I + P P
Sbjct: 333 TSPAAAYPHTSLQLPASQSAL-QSQQPPREQPLPPAPL--AMPHIKPPPTTPIPQLPAPQ 389
Query: 1100 EH 1101
H
Sbjct: 390 AH 391
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 65.9 bits (159), Expect = 2e-10
Identities = 100/349 (28%), Positives = 133/349 (38%), Gaps = 63/349 (18%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQY-YPHGENPPPPGFIMHGN 848
QG P A ++P P Q P P P Q P + Q+ PH PPP H
Sbjct: 776 QGSPTAS-QAPNQP----QAPTA-PVPHTHIQQAPALHPQRPPSPH----PPPHPSPHPP 825
Query: 849 VNP--NAAGQLPTSPGH----MHTQVPPYPQ-----PQPYQPAQPYPFGTGGSAMYRPQQ 897
+ P +AGQ P++P H +H Q PP P P P P PFG A + Q
Sbjct: 826 LQPLTGSAGQ-PSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQAS-QGQA 883
Query: 898 PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGG 957
P+ + AYP+T AS QSQ + Q P PPP++
Sbjct: 884 PLGTSPAAAYPHTSLQLPASQSALQSQ-QPPREQPLPPAPLAMPHIKPPPTTPIP----- 937
Query: 958 PGAPPSSSAYALPPGTTGPQN-----GWNDPPALNRV--------PKKKKMPENFMPPV- 1003
P+ A+ PP +GP PPAL + P P MP
Sbjct: 938 --QLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 995
Query: 1004 PITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQ------PHLPGGQPFHGVQQP-LG 1056
P+ S P G QSQ L P++ P PQ P +PGG P + P
Sbjct: 996 PLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPP--PITPPTCP 1053
Query: 1057 QTGMPP----SFSKPNIEGAPGAPIGNTFQHVQS--LPTKKITKKPIPD 1099
T PP + ++P GA A G + S LPT +I ++ + D
Sbjct: 1054 STSTPPAGPGTSAQPPCSGA--AASGGSIAGGSSCPLPTVQIKEEALDD 1100
Score = 55.5 bits (132), Expect = 3e-07
Identities = 72/296 (24%), Positives = 103/296 (34%), Gaps = 56/296 (18%)
Query: 840 PPGFIMHGNVNPNAAGQLPT-SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQP 898
P G + P QLPT P T VPP P T A +PQ P
Sbjct: 744 PTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSP------------TASQAPNQPQAP 791
Query: 899 VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP-------TSSPATSFPP-----P 946
AP P + + + + H P S+P+ + PP P
Sbjct: 792 TAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 851
Query: 947 P-----SSGASFQHGGP----GAPPSSSAYALPPGTTG----PQNGWNDPPALNRVPKKK 993
P +G QH GP G PP +S P GT+ P P + + + ++
Sbjct: 852 PGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQ 911
Query: 994 KMPENFMPPVPITSPIMNP--------LGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGG 1045
E +PP P+ P + P L PQ+ S P P S ++ P P P
Sbjct: 912 PPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPP--PAL 969
Query: 1046 QPFHGVQQPLGQTGMPPSF-----SKPNIEGAPGAPIGNTFQHVQSLPTKKITKKP 1096
+P + + PP S+P + +P P G T Q+LP + P
Sbjct: 970 KPLSSLSTHHPPSAHPPPLQLMPQSQP-LPSSPAQPPGLT--QSQNLPPPPASHPP 1022
Score = 51.2 bits (121), Expect = 6e-06
Identities = 63/234 (26%), Positives = 94/234 (40%), Gaps = 37/234 (15%)
Query: 789 AQGEPVAGHESPKIPYEKQQLPK-GRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ +P + P P+ Q P PGP P+ +Q P G +P
Sbjct: 840 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQA-SQGQAPLGTSPAA------- 891
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQP-AQPYPFGTGGSAMYRPQQPVAP-PTSN 905
P+ + QLP S + +Q PP QP P P A P+ P P+ P
Sbjct: 892 -AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPH-------IKPPPTTPIPQLPAPQ 943
Query: 906 AYPNTPYISSASSYTGQSQL---YAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
A+ + P++S S ++ + L A + +S T P ++ PPP P + P
Sbjct: 944 AHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQL-------MPQSQP 996
Query: 963 SSSAYALPPGTTGPQN-----GWNDPPALNRV-PKKKKMPENFMP--PVPITSP 1008
S+ A PPG T QN + P L++V P+ F+P P PIT P
Sbjct: 997 LPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPP 1050
Score = 47.0 bits (110), Expect = 1e-04
Identities = 61/242 (25%), Positives = 82/242 (33%), Gaps = 50/242 (20%)
Query: 903 TSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
TS + P+ S S + Q Q+ QA P T P PSS P P
Sbjct: 711 TSPSIPSPQDNESDSDSSAQQQML----QAQPPALQAPTGVTPAPSSAPPGTPQLPTPGP 766
Query: 963 SSSAYALPP-GTTGPQNGWNDPPA---------LNRVPK--KKKMPENFMPPVPITSPIM 1010
+ SA A+PP G+ N P A + + P ++ P PP P P +
Sbjct: 767 TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPL 826
Query: 1011 NPL----GDP---------------------QSQMLQQQPSAPVPLSSQSSFPQPHLPGG 1045
PL G P Q+ L Q P P P Q P G
Sbjct: 827 QPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLG 886
Query: 1046 ------QPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPD 1099
P +Q P Q+ + S P + P AP+ H++ PT I + P P
Sbjct: 887 TSPAAAYPHTSLQLPASQSAL-QSQQPPREQPLPPAPL--AMPHIKPPPTTPIPQLPAPQ 943
Query: 1100 EH 1101
H
Sbjct: 944 AH 945
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 65.9 bits (159), Expect = 2e-10
Identities = 100/349 (28%), Positives = 133/349 (38%), Gaps = 63/349 (18%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQY-YPHGENPPPPGFIMHGN 848
QG P A ++P P Q P P P Q P + Q+ PH PPP H
Sbjct: 776 QGSPTAS-QAPNQP----QAPTA-PVPHTHIQQAPALHPQRPPSPH----PPPHPSPHPP 825
Query: 849 VNP--NAAGQLPTSPGH----MHTQVPPYPQ-----PQPYQPAQPYPFGTGGSAMYRPQQ 897
+ P +AGQ P++P H +H Q PP P P P P PFG A + Q
Sbjct: 826 LQPLTGSAGQ-PSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQAS-QGQA 883
Query: 898 PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGG 957
P+ + AYP+T AS QSQ + Q P PPP++
Sbjct: 884 PLGTSPAAAYPHTSLQLPASQSALQSQ-QPPREQPLPPAPLAMPHIKPPPTTPIP----- 937
Query: 958 PGAPPSSSAYALPPGTTGPQN-----GWNDPPALNRV--------PKKKKMPENFMPPV- 1003
P+ A+ PP +GP PPAL + P P MP
Sbjct: 938 --QLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 995
Query: 1004 PITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQ------PHLPGGQPFHGVQQP-LG 1056
P+ S P G QSQ L P++ P PQ P +PGG P + P
Sbjct: 996 PLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPP--PITPPTCP 1053
Query: 1057 QTGMPP----SFSKPNIEGAPGAPIGNTFQHVQS--LPTKKITKKPIPD 1099
T PP + ++P GA A G + S LPT +I ++ + D
Sbjct: 1054 STSTPPAGPGTSAQPPCSGA--AASGGSIAGGSSCPLPTVQIKEEALDD 1100
Score = 55.5 bits (132), Expect = 3e-07
Identities = 72/296 (24%), Positives = 103/296 (34%), Gaps = 56/296 (18%)
Query: 840 PPGFIMHGNVNPNAAGQLPT-SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQP 898
P G + P QLPT P T VPP P T A +PQ P
Sbjct: 744 PTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSP------------TASQAPNQPQAP 791
Query: 899 VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP-------TSSPATSFPP-----P 946
AP P + + + + H P S+P+ + PP P
Sbjct: 792 TAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 851
Query: 947 P-----SSGASFQHGGP----GAPPSSSAYALPPGTTG----PQNGWNDPPALNRVPKKK 993
P +G QH GP G PP +S P GT+ P P + + + ++
Sbjct: 852 PGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQ 911
Query: 994 KMPENFMPPVPITSPIMNP--------LGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGG 1045
E +PP P+ P + P L PQ+ S P P S ++ P P P
Sbjct: 912 PPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPP--PAL 969
Query: 1046 QPFHGVQQPLGQTGMPPSF-----SKPNIEGAPGAPIGNTFQHVQSLPTKKITKKP 1096
+P + + PP S+P + +P P G T Q+LP + P
Sbjct: 970 KPLSSLSTHHPPSAHPPPLQLMPQSQP-LPSSPAQPPGLT--QSQNLPPPPASHPP 1022
Score = 51.2 bits (121), Expect = 6e-06
Identities = 63/234 (26%), Positives = 94/234 (40%), Gaps = 37/234 (15%)
Query: 789 AQGEPVAGHESPKIPYEKQQLPK-GRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ +P + P P+ Q P PGP P+ +Q P G +P
Sbjct: 840 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQA-SQGQAPLGTSPAA------- 891
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQP-AQPYPFGTGGSAMYRPQQPVAP-PTSN 905
P+ + QLP S + +Q PP QP P P A P+ P P+ P
Sbjct: 892 -AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPH-------IKPPPTTPIPQLPAPQ 943
Query: 906 AYPNTPYISSASSYTGQSQL---YAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
A+ + P++S S ++ + L A + +S T P ++ PPP P + P
Sbjct: 944 AHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQL-------MPQSQP 996
Query: 963 SSSAYALPPGTTGPQN-----GWNDPPALNRV-PKKKKMPENFMP--PVPITSP 1008
S+ A PPG T QN + P L++V P+ F+P P PIT P
Sbjct: 997 LPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPPITPP 1050
Score = 47.0 bits (110), Expect = 1e-04
Identities = 61/242 (25%), Positives = 82/242 (33%), Gaps = 50/242 (20%)
Query: 903 TSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
TS + P+ S S + Q Q+ QA P T P PSS P P
Sbjct: 711 TSPSIPSPQDNESDSDSSAQQQML----QAQPPALQAPTGVTPAPSSAPPGTPQLPTPGP 766
Query: 963 SSSAYALPP-GTTGPQNGWNDPPA---------LNRVPK--KKKMPENFMPPVPITSPIM 1010
+ SA A+PP G+ N P A + + P ++ P PP P P +
Sbjct: 767 TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPL 826
Query: 1011 NPL----GDP---------------------QSQMLQQQPSAPVPLSSQSSFPQPHLPGG 1045
PL G P Q+ L Q P P P Q P G
Sbjct: 827 QPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLG 886
Query: 1046 ------QPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPD 1099
P +Q P Q+ + S P + P AP+ H++ PT I + P P
Sbjct: 887 TSPAAAYPHTSLQLPASQSAL-QSQQPPREQPLPPAPL--AMPHIKPPPTTPIPQLPAPQ 943
Query: 1100 EH 1101
H
Sbjct: 944 AH 945
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapiens]
Length = 816
Score = 65.5 bits (158), Expect = 3e-10
Identities = 76/285 (26%), Positives = 102/285 (35%), Gaps = 51/285 (17%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAG--QLPTSPGHMHTQ 867
P RP P + PR H P P P+A G Q P S +
Sbjct: 185 PSARPRPPT---EGPRKSVSSASEHSTTEPSPA----ARRRPSAGGGLQRPASRSLSSSA 237
Query: 868 VP--------PYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSY 919
P P + P PA P G RP Q V PP +A P +SS
Sbjct: 238 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ-VTPPRKDAAPALGPLSS---- 292
Query: 920 TGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQ--HGGPGAPPSSSAYALPPGTTGPQ 977
SP ++P+ S PP PS+ S Q P PPS + +L T
Sbjct: 293 --------------SPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQAT 338
Query: 978 NGWNDPPALN-------RVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVP 1030
+ + P L+ + P +P PP P SP ++PL P Q P+A
Sbjct: 339 HSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPS----PQAPNALAV 394
Query: 1031 LSSQSSF-PQPHLPGGQPFH-GVQQPLGQTGMPPSFSKPNIEGAP 1073
Q+ F P P P PF P+ + PPS + P++ P
Sbjct: 395 HLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPP 439
Score = 50.1 bits (118), Expect = 1e-05
Identities = 78/296 (26%), Positives = 97/296 (32%), Gaps = 53/296 (17%)
Query: 799 SPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAG--Q 856
SP P Q LP P + T Q H P PP ++P A Q
Sbjct: 305 SPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA-THSFLPSPP-------LSPLATPPPQ 356
Query: 857 LPTSPGHMHTQVPPYPQPQP-YQP-AQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYIS 914
P + Q PP P P P A P P A++ Q P +PP S P+
Sbjct: 357 APPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPV-QAPFSP 415
Query: 915 SASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTT 974
AS S QA ++P PP P P +PP S + PP
Sbjct: 416 PASPPVSPSA--TPPSQAPPSLAAPPLQVPPSP----------PASPPMSPSATPPPQA- 462
Query: 975 GPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQ 1034
PP L P + P PP T P LQ PS P Q
Sbjct: 463 --------PPPLAAPPLQLAKPPPQAPPALATPP------------LQALPSPPASFPGQ 502
Query: 1035 SSF-PQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPT 1089
+ F P L P + P Q PP + P ++ P P T Q + PT
Sbjct: 503 APFSPSASL----PMSPLATPPPQA--PPVLAAPLLQVPPSPPASPTLQAPRRPPT 552
Score = 33.9 bits (76), Expect = 0.96
Identities = 53/196 (27%), Positives = 62/196 (31%), Gaps = 35/196 (17%)
Query: 800 PKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPT 859
P + Q+P P P A P P PP + P A L T
Sbjct: 433 PSLAAPPLQVP---PSPPASPPMSPSATPPPQAPPPLAAPP---LQLAKPPPQAPPALAT 486
Query: 860 SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYP--NTPYISSAS 917
P + P P P Q PF S P P+A P A P P +
Sbjct: 487 PP------LQALPSPPASFPGQA-PFSPSASL---PMSPLATPPPQAPPVLAAPLLQVPP 536
Query: 918 SYTGQSQLYAAQHQASSPTSSPATSF-------------PPPPSSGASFQHGGPG-APPS 963
S L A + PT P TS PPPPS S GP A S
Sbjct: 537 SPPASPTLQAPRRP---PTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHS 593
Query: 964 SSAYALPPGTTGPQNG 979
SSA + P G +G
Sbjct: 594 SSATSTPEELRGYDSG 609
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 65.5 bits (158), Expect = 3e-10
Identities = 84/307 (27%), Positives = 102/307 (33%), Gaps = 31/307 (10%)
Query: 788 RAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ QG P G P+ P P+G P P G+ P+ P G PPP G
Sbjct: 56 KPQGPPPQGGNQPQGPPPPPGKPQGPP-PQGGNK--PQGPPPPGKPQG--PPPQGDKSRS 110
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY 907
+P Q P G Q PP P +P P P G P +P PP
Sbjct: 111 PRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNKPQGPPPPGKPQGPPPQGDN 168
Query: 908 PNTPYISSASSYTGQSQLYAAQ--HQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSS 965
+ S+ S G+ Q Q +Q P P PPP G Q G PP
Sbjct: 169 KS----RSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ----GPPPPGK 220
Query: 966 AYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPL---GDPQSQMLQ 1022
PP PP + P + + PP P P P PQ
Sbjct: 221 PQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 280
Query: 1023 QQPSAPVP---LSSQSSFPQPHLPGGQPFHGVQQPLG--------QTGMPPSFSKPNIEG 1071
+P P P S+SS P P G P G QP G Q P +KP
Sbjct: 281 GKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 340
Query: 1072 APGAPIG 1078
PG P G
Sbjct: 341 PPGKPQG 347
Score = 63.9 bits (154), Expect = 9e-10
Identities = 89/331 (26%), Positives = 110/331 (33%), Gaps = 38/331 (11%)
Query: 788 RAQGEPVAGHES--PKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGEN----PPPP 841
+ QG P G +S P+ P K Q P + G P + Q P G N PPPP
Sbjct: 97 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 156
Query: 842 GFIM----------HGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSA 891
G + +P Q P G Q PP P +P P P G
Sbjct: 157 GKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNKPQG 214
Query: 892 MYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQ--HQASSPTSSPATSFPPPPSS 949
P +P PP + SA S G+ Q Q +Q P P PPP
Sbjct: 215 PPPPGKPQGPPPQGDNKS----QSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 270
Query: 950 GASFQHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPI 1009
G Q G PP PP PP + P + + PP P P
Sbjct: 271 GNKPQ----GPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 326
Query: 1010 MNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNI 1069
P PQ Q P P P Q PQ GG + P G+ PP N
Sbjct: 327 GPP---PQGGNKPQGP--PPPGKPQGPPPQ----GGSKSRSARSPPGKPQGPPQQEGNNP 377
Query: 1070 EGAPGAPIGNTFQHVQSLPTKKITKKPIPDE 1100
+G P P G Q Q+ P + P P +
Sbjct: 378 QGPP-PPAGGNPQQPQAPPAGQPQGPPRPPQ 407
Score = 57.4 bits (137), Expect = 8e-08
Identities = 71/257 (27%), Positives = 82/257 (31%), Gaps = 27/257 (10%)
Query: 838 PPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQ 897
PP G G +P Q P G Q PP P +P P P G P +
Sbjct: 40 PPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNKPQGPPPPGK 97
Query: 898 PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQ--HQASSPTSSPATSFPPPPSSGASFQH 955
P PP P S S G+ Q Q +Q P P PPP G Q
Sbjct: 98 PQGPP-----PQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ- 151
Query: 956 GGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPL-- 1013
G PP PP PP + P + + PP P P P
Sbjct: 152 ---GPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 208
Query: 1014 -GDPQSQMLQQQPSAPVPL---SSQSSFPQPHLPGGQPFHGVQQPLG--------QTGMP 1061
PQ +P P P SQS+ P P G P G QP G Q P
Sbjct: 209 GNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 268
Query: 1062 PSFSKPNIEGAPGAPIG 1078
+KP PG P G
Sbjct: 269 QGGNKPQGPPPPGKPQG 285
Score = 52.8 bits (125), Expect = 2e-06
Identities = 74/265 (27%), Positives = 93/265 (35%), Gaps = 37/265 (13%)
Query: 788 RAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ QG P G P+ P P+G P P G+ P+ P G PPP G
Sbjct: 179 KPQGPPPQGGNQPQGPPPPPGKPQGPP-PQGGNK--PQGPPPPGKPQG--PPPQGDNKSQ 233
Query: 848 NV-NPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNA 906
+ +P Q P G Q PP P P +P P P G +PQ P P
Sbjct: 234 SARSPPGKPQGPPPQGGNQPQGPP---PPPGKPQGPPPQGGN-----KPQGPPPPGKPQG 285
Query: 907 YPNTPYISSASSYT--GQSQLYAAQ--HQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
P S SS + G+ Q Q +Q P P PPP G Q G PP
Sbjct: 286 PPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ----GPPP 341
Query: 963 SSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQ 1022
PP PP + P +++ PP P G+P
Sbjct: 342 PGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAG-------GNP------ 388
Query: 1023 QQPSAPVPLSSQSSFPQPHLPGGQP 1047
QQP AP P P+P GG+P
Sbjct: 389 QQPQAP-PAGQPQGPPRPP-QGGRP 411
Score = 46.2 bits (108), Expect = 2e-04
Identities = 49/184 (26%), Positives = 62/184 (33%), Gaps = 9/184 (4%)
Query: 788 RAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ QG P G P+ P P+G P P G+ P+ P G PP G
Sbjct: 241 KPQGPPPQGGNQPQGPPPPPGKPQGPP-PQGGNK--PQGPPPPGKPQGP-PPQGGSKSRS 296
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY 907
+ +P Q P G Q PP P +P P P G P +P PP
Sbjct: 297 SRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNKPQGPPPPGKPQGPPPQGGS 354
Query: 908 PNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAY 967
+ S G Q Q P PA P P + + Q GP PP
Sbjct: 355 KSRSARSPPGKPQGPPQQEGNNPQGPPP---PAGGNPQQPQAPPAGQPQGPPRPPQGGRP 411
Query: 968 ALPP 971
+ PP
Sbjct: 412 SRPP 415
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 64.7 bits (156), Expect = 5e-10
Identities = 76/310 (24%), Positives = 113/310 (36%), Gaps = 65/310 (20%)
Query: 789 AQGEPVAG----HESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENP------ 838
A G P+A + + + Y QQ P P+ H +P Q+Q +PH +P
Sbjct: 1022 AAGPPIAATPPAYSTQYVAYSPQQFPNQ---PLVQH--VPHYQSQ--HPHVYSPVIQGNA 1074
Query: 839 ---PPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRP 895
PP G V+ +A H P P + P+ + TG A
Sbjct: 1075 RMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLA---- 1130
Query: 896 QQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSP----------ATSFPP 945
Q A P + +P+TP+ +++ TGQ Q +QH S P SP A
Sbjct: 1131 -QQYAHPNATLHPHTPHPQPSATPTGQQQ---SQHGGSHPAPSPVQHHQHQAAQALHLAS 1186
Query: 946 PPSSGASFQHGGPGAPPSSSAYALPPGTTGPQN-------------------GWNDPPAL 986
P A + G PPS + + T PQN + +PP +
Sbjct: 1187 PQQQSAIYHAGLAPTPPSMTPAS---NTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHM 1243
Query: 987 NRVP----KKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHL 1042
VP + +P + P+ P G PQ+ L Q P+P+S+ + FP
Sbjct: 1244 AHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQA-ALAQSALQPIPVSTTAHFPYMTH 1302
Query: 1043 PGGQPFHGVQ 1052
P Q H Q
Sbjct: 1303 PSVQAHHQQQ 1312
Score = 35.0 bits (79), Expect = 0.43
Identities = 43/185 (23%), Positives = 64/185 (34%), Gaps = 18/185 (9%)
Query: 860 SPGHMHTQVPPYPQPQPYQPAQPYP------FGTGGSA--MYRPQQPVAPPTSNAYPNTP 911
+PG + PP P P P Q P FG+ G+ +RP P P
Sbjct: 46 APGPYPSAAPPPPGPGPPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGG--PPRP 103
Query: 912 YISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPP 971
++ AA +AS P + PP SG S PG P + P
Sbjct: 104 FVVLLLPLASPGAPPAAPTRAS-----PLGARASPPRSGVSLARPAPGCPRPACEPVYGP 158
Query: 972 GTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPL 1031
T + + ++++ + P P + + P G S +L +AP P
Sbjct: 159 LTMSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGG---SGLLASPAAAPSPS 215
Query: 1032 SSQSS 1036
SS S
Sbjct: 216 SSSVS 220
Score = 33.1 bits (74), Expect = 1.6
Identities = 38/179 (21%), Positives = 57/179 (31%), Gaps = 9/179 (5%)
Query: 833 PHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAM 892
P + PP + N P A PT P P P P P P T M
Sbjct: 557 PSPSSRPPSRYQSGPNSLPPRAAT-PTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRM 615
Query: 893 YRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGAS 952
P P + +P +S+ + + + S + P P + +S
Sbjct: 616 SSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHNPPSEAATPPVARTSPSGGTWSS 675
Query: 953 FQHGGPGAPPSSSAYALPPGTTGPQNGWNDPPA--LNRVPKKKKMP-ENFMPPVPITSP 1008
G P P + P QN + P+ + P+ +P E P+P SP
Sbjct: 676 VVSGVPRLSPKTHRPRSP-----RQNSIGNTPSGPVLASPQAGIIPTEAVAMPIPAASP 729
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 64.7 bits (156), Expect = 5e-10
Identities = 79/303 (26%), Positives = 109/303 (35%), Gaps = 57/303 (18%)
Query: 793 PVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNP- 851
P G SP P K + P P + Q+ Q Q G + G P
Sbjct: 569 PSPGDGSP--PKPKDPVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMG-------QPH 619
Query: 852 NAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGG-----SAMYRPQQPVAPPTSNA 906
NAAG P H + P P P +P P P GG ++ + P PPT +
Sbjct: 620 NAAGPSP----HTLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSP 675
Query: 907 YPNTPYISSASSY-TGQSQLYAAQHQAS--SPTSSPATSFPPPPSSGASFQHGGPGAPPS 963
P T + + SQL A + +S SP +P P PP+ H P +
Sbjct: 676 SPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGP 735
Query: 964 SSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQ 1023
+ ALP ++G P + PP T P PLG +Q
Sbjct: 736 PNPMALP-----SEHGLEQP--------------SHTPPQTPTPPSTPPLG-------KQ 769
Query: 1024 QPSAPVPLSSQSSFP---QPH---LPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPI 1077
PS P P + P QPH LP +P V +P + +PP P + A + +
Sbjct: 770 NPSLPAPQTLAGGNPETAQPHAGTLPRPRP---VPKPRNRPSVPPPPQPPGVHSAGDSSL 826
Query: 1078 GNT 1080
NT
Sbjct: 827 TNT 829
Score = 50.4 bits (119), Expect = 1e-05
Identities = 52/168 (30%), Positives = 66/168 (39%), Gaps = 17/168 (10%)
Query: 938 SPATSFPPPPSSGASFQHGGPGAPPSSS-AYALPPGTTGPQNGW---NDPPALNRVPKKK 993
SPA P PP+ G++ GP PP SS A + G T P + P + P K
Sbjct: 520 SPAFQPPLPPTDGSTVVPAGPEPPPQSSRAESSSGGGTVPSSAGILEQGPSPGDGSPPKP 579
Query: 994 KMPENFMPPVPITSPIMNPLGDPQSQML--QQQPSAPVPLSSQSSFPQPHLPGGQPFHGV 1051
K P + P P G SQ+ Q QP A S Q S QPH G H +
Sbjct: 580 KDPVSAAVPAP---------GRNNSQIASGQNQPQAAAG-SHQLSMGQPHNAAGPSPHTL 629
Query: 1052 QQPLGQTG-MPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIP 1098
++ + + PP P G T QH SL K T+ P P
Sbjct: 630 RRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSP 677
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 63.9 bits (154), Expect = 9e-10
Identities = 62/211 (29%), Positives = 83/211 (39%), Gaps = 19/211 (9%)
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY 907
N +P + PTSP + T P Y P P T S Y P P PTS +Y
Sbjct: 1747 NYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPT--SPSYSPTSPSYSPTSPSY 1804
Query: 908 -PNTP-YISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAP---P 962
P++P Y + +YT S Y+ + SPTS T P PS S P +P P
Sbjct: 1805 SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYT--PTSPSYSPSSPEYTPTSPKYSP 1862
Query: 963 SSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI---TSPIMNPLGDPQSQ 1019
+S Y+ T P+ P PK + P P+ TSP +P S
Sbjct: 1863 TSPKYS----PTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSP 1918
Query: 1020 ML-QQQPSAPV--PLSSQSSFPQPHLPGGQP 1047
+ P++P P S + S P PG P
Sbjct: 1919 TSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 1949
Score = 55.8 bits (133), Expect = 2e-07
Identities = 51/199 (25%), Positives = 77/199 (38%), Gaps = 24/199 (12%)
Query: 793 PVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPN 852
P + + SP P P P + PR Q P P + +P+
Sbjct: 1778 PTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQS---PTYTPSSPSY------SPS 1828
Query: 853 AAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY-PNTP 911
+ PTSP + T P Y P P T S Y P P PTS Y P TP
Sbjct: 1829 SPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT--SPKYSPTSPKYSPTSPTYSPTTP 1886
Query: 912 -YISSASSYTGQSQLY---AAQHQASSPTSSPAT--------SFPPPPSSGASFQHGGPG 959
Y ++ +Y+ S +Y + ++ +SPT SP + ++ P G+++ PG
Sbjct: 1887 KYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPG 1946
Query: 960 APPSSSAYALPPGTTGPQN 978
P+S Y+L P +
Sbjct: 1947 YSPTSPTYSLTSPAISPDD 1965
Score = 54.3 bits (129), Expect = 7e-07
Identities = 62/229 (27%), Positives = 85/229 (37%), Gaps = 30/229 (13%)
Query: 850 NPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY-P 908
+P + PTSP + T P Y P P Y P P PTS +Y P
Sbjct: 1658 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---------SYSPTSPSYSPTSPSYSP 1708
Query: 909 NTP-YISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAY 967
+P Y ++ SY+ S Y+ + SPT SP+ S P S S P P+S +Y
Sbjct: 1709 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPNYSPTS-----PNYTPTSPSY 1762
Query: 968 ALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSA 1027
+ T P P P ++ P P SP +P P S + P +
Sbjct: 1763 S----PTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP-TSPSYSPSSP--RYTPQS 1815
Query: 1028 PVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAP 1076
P S S+ P P P P PS+S + E P +P
Sbjct: 1816 PTYTPSSPSY-SPSSPSYSPTSPKYTPTS-----PSYSPSSPEYTPTSP 1858
Score = 52.0 bits (123), Expect = 3e-06
Identities = 51/191 (26%), Positives = 71/191 (37%), Gaps = 28/191 (14%)
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQP-----YPFGTGGSAMYRPQQPVAPP 902
N P + PTSP + T P Y P+ P P T S Y P P P
Sbjct: 1775 NYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSP 1834
Query: 903 TSNAY-PNTP-YISSASSYTGQSQLY----------AAQHQASSPTSSPATSFPPPPSSG 950
TS Y P +P Y S+ YT S Y + ++ +SPT SP T P +
Sbjct: 1835 TSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTT--PKYSPTS 1892
Query: 951 ASFQHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKK------MPENFMPPVP 1004
++ P P+S Y+ T P + P + P K + P P
Sbjct: 1893 PTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSP 1952
Query: 1005 ---ITSPIMNP 1012
+TSP ++P
Sbjct: 1953 TYSLTSPAISP 1963
Score = 37.0 bits (84), Expect = 0.11
Identities = 64/259 (24%), Positives = 88/259 (33%), Gaps = 36/259 (13%)
Query: 834 HGENPPPPGF---IMHGNVNPNAAGQLPTSPG--------HMHTQVPPYPQPQP---YQP 879
HGE+ P G IM G + P G + T +P P +
Sbjct: 1445 HGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFG 1504
Query: 880 AQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSP 939
+ P P G G S P A P A+ + G S A+ SP SP
Sbjct: 1505 SAPSPMG-GISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSP 1563
Query: 940 ATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENF 999
A S P G PG+P SS Y PG + PA + + P +
Sbjct: 1564 AWSPTP----------GSPGSPGPSSPYIPSPGGAMSPSYSPTSPAY-----EPRSPGGY 1608
Query: 1000 MPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTG 1059
P P SP +P P S P++P + S+ P P P P +
Sbjct: 1609 TPQSPSYSP-TSPSYSPTSP--SYSPTSPNYSPTSPSY-SPTSPSYSPTSPSYSPTSPSY 1664
Query: 1060 MP--PSFSKPNIEGAPGAP 1076
P PS+S + +P +P
Sbjct: 1665 SPTSPSYSPTSPSYSPTSP 1683
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 63.9 bits (154), Expect = 9e-10
Identities = 78/298 (26%), Positives = 108/298 (36%), Gaps = 57/298 (19%)
Query: 798 ESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNP-NAAGQ 856
ESP P K + P P + Q+ Q Q G + G P NAAG
Sbjct: 496 ESP--PKPKDPVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMG-------QPHNAAGP 546
Query: 857 LPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGG-----SAMYRPQQPVAPPTSNAYPNTP 911
P H + P P P +P P P GG ++ + P PPT + P T
Sbjct: 547 SP----HTLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQ 602
Query: 912 YISSASSY-TGQSQLYAAQHQAS--SPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYA 968
+ + SQL A + +S SP +P P PP+ H P + + A
Sbjct: 603 HTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGPPNPMA 662
Query: 969 LPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAP 1028
LP ++G P + PP T P PLG +Q PS P
Sbjct: 663 LP-----SEHGLEQP--------------SHTPPQTPTPPSTPPLG-------KQNPSLP 696
Query: 1029 VPLSSQSSFP---QPH---LPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNT 1080
P + P QPH LP +P V +P + +PP P + A + + NT
Sbjct: 697 APQTLAGGNPETAQPHAGTLPRPRP---VPKPRNRPSVPPPPQPPGVHSAGDSSLTNT 751
Score = 35.0 bits (79), Expect = 0.43
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 992 KKKMPENFMPPVPITSPIMNPLGDPQSQML--QQQPSAPVPLSSQSSFPQPHLPGGQPFH 1049
KK+ P P P+++ + P G SQ+ Q QP A S Q S QPH G H
Sbjct: 494 KKESPPK--PKDPVSAAVPAP-GRNNSQIASGQNQPQAAAG-SHQLSMGQPHNAAGPSPH 549
Query: 1050 GVQQPLGQTG-MPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIP 1098
+++ + + PP P G T QH SL K T+ P P
Sbjct: 550 TLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSP 599
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 62.4 bits (150), Expect = 3e-09
Identities = 88/337 (26%), Positives = 113/337 (33%), Gaps = 79/337 (23%)
Query: 798 ESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQL 857
E+ P K++ GR HH ++Q Q P + PPPP Q
Sbjct: 718 ETEMAPKSKKKGHPGREQKKHHHHHHQQMQ-QAPAPVPQQPPPP------------PQQP 764
Query: 858 PTSPGHMHTQVPPYPQPQPYQPAQ--------PYPFGTGGSAMYRPQ------------- 896
P P Q PP P P P P Q P PF + PQ
Sbjct: 765 PPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQVPVLEPQLPGSVFDPIGHFT 824
Query: 897 -------QPVAPPTSNAYP--NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPP 947
QP PP P +TP + + L+ A Q S S+ A + PP P
Sbjct: 825 QPILHLPQPELPPHLPQPPEHSTPPHLNQHAVVSPPALHNALPQQPSRPSNRAAALPPKP 884
Query: 948 SSGASFQHGGPGAPPSSSAYAL---PPGTTGPQNGWND--PPA-----------LNRVPK 991
+ P P+ + L PP PQ D PPA L ++ +
Sbjct: 885 ARP-------PAVSPALTQTPLLPQPPMAQPPQVLLEDEEPPAPPLTSMQMQLYLQQL-Q 936
Query: 992 KKKMPENFMPPVPITSPIMNPLGDPQ----SQMLQQQPSAPVPLSSQSSFPQPHLPGGQP 1047
K + P +P V + S PL P Q LQQQP P P Q Q H P +P
Sbjct: 937 KVQPPTPLLPSVKVQSQPPPPLPPPPHPSVQQQLQQQPPPPPPPQPQPPPQQQHQPPPRP 996
Query: 1048 FH--------GVQQPLGQTGMPPSFSKPNIEGAPGAP 1076
H +QQP G P P + P P
Sbjct: 997 VHLQPMQFSTHIQQPPPPQGQQPPHPPPGQQPPPPQP 1033
Score = 47.8 bits (112), Expect = 6e-05
Identities = 71/289 (24%), Positives = 96/289 (33%), Gaps = 48/289 (16%)
Query: 788 RAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ Q +P P P +QQL + P P Q P Q Q P + P F H
Sbjct: 949 KVQSQPPPPLPPPPHPSVQQQLQQQPPPPPPPQPQPPPQQQHQPPPRPVHLQPMQFSTHI 1008
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPY---------------PFGTG---- 888
P GQ P P PP QP P QPA+P P+ TG
Sbjct: 1009 QQPPPPQGQQPPHP-------PPGQQPPPPQPAKPQQVIQHHHSPRHHKSDPYSTGHLRE 1061
Query: 889 ---GSAMYRPQQP-------VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP--T 936
++ PQ +PP N P + +AS Q + + + SP
Sbjct: 1062 APSPLMIHSPQMSQFQSLTHQSPPQQNVQPKKQELRAASVVQPQPLVVVKEEKIHSPIIR 1121
Query: 937 SSPATSF--PPPPSSGASFQHGG--PGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKK 992
S P + P PP S + P P P P+ N PP P K
Sbjct: 1122 SEPFSPSLRPEPPKHPESIKAPVHLPQRPEMKPVDVGRPVIRPPEQ--NAPPP--GAPDK 1177
Query: 993 KKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAP--VPLSSQSSFPQ 1039
K + PV + + ++Q+ P+ P SS SF Q
Sbjct: 1178 DKQKQEPKTPVAPKKDLKIKNMGSWASLVQKHPTTPSSTAKSSSDSFEQ 1226
Score = 31.6 bits (70), Expect = 4.8
Identities = 49/183 (26%), Positives = 63/183 (34%), Gaps = 46/183 (25%)
Query: 824 PRVQTQQYYPHGENPPPPGFIMHG--NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQ 881
P+ QT Q NPPP H V P+ Q P T VPP QP Q
Sbjct: 206 PQTQTPQ-----PNPPPVQATPHPFPAVTPDLIVQTPVM-----TVVPP----QPLQTPP 251
Query: 882 PYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPAT 941
P P +PQ P AP + P I++ T Q + + T++P T
Sbjct: 252 PVP--------PQPQPPPAPAPQPVQSHPPIIAA----TPQPVKTKKGVKRKADTTTPTT 299
Query: 942 SFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMP 1001
P H P PP P T Q + P P KK +P++
Sbjct: 300 IDP---------IHEPPSLPPE------PKTTKLGQRRESSRPV---KPPKKDVPDSQQH 341
Query: 1002 PVP 1004
P P
Sbjct: 342 PAP 344
>gi|58331266 WD repeat domain 59 [Homo sapiens]
Length = 974
Score = 61.2 bits (147), Expect = 6e-09
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HT + LD +F+ +L+ + + ++ IYIWD+ + P S + WN++
Sbjct: 104 HTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKD---TRKPTVALSAVAGASQVKWNKKN 160
Query: 181 QHILASASPSGRATVWDLRKNEPIIK-VSDHSNRMHCSGLAWHPDVATQMVLASEDDRLP 239
+ LA+ S G +WD RK ++ ++ H +++H GL WHPD + +S+D+
Sbjct: 161 ANCLAT-SHDGDVRIWDKRKPSTAVEYLAAHLSKIH--GLDWHPDSEHILATSSQDNS-- 215
Query: 240 VIQMWDLRFASSPLRVL 256
++ WD R L +L
Sbjct: 216 -VKFWDYRQPRKYLNIL 231
Score = 30.8 bits (68), Expect = 8.1
Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 11/154 (7%)
Query: 133 FQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGR 192
F AS ++Y W + T T+ D+ W +L ++S
Sbjct: 73 FAHYFAASSNQRVDLYKWKDGSGEVGTTLQGHTRVISDLD---WAVFEPDLLVTSSVDTY 129
Query: 193 ATVWDLRKN-EPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASS 251
+WD++ +P + +S + S + W+ A + + + D +++WD R S+
Sbjct: 130 IYIWDIKDTRKPTVALSAVAG---ASQVKWNKKNANCLATSHDGD----VRIWDKRKPST 182
Query: 252 PLRVLENHARGILAIAWSMADPELLLSCGKDAKI 285
+ L H I + W +L + +D +
Sbjct: 183 AVEYLAAHLSKIHGLDWHPDSEHILATSSQDNSV 216
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 59.3 bits (142), Expect = 2e-08
Identities = 70/282 (24%), Positives = 104/282 (36%), Gaps = 48/282 (17%)
Query: 793 PVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQ----QYYPHGENPPPPGFIMHGN 848
P+ ++P + + Q G P G+ PR+Q Q+ P + P + +
Sbjct: 724 PIVPRQTPPLQHHGQLAQPGALNPPMGYG--PRMQQPSNQGQFLPQTQFPSQGMNVTNIP 781
Query: 849 VNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYP 908
+ P++ GQ P S M + P P P G+ GS ++ PQ P N+
Sbjct: 782 LAPSS-GQAPVSQAQMSSSSCPVNSPI-------MPPGSQGSHIHCPQLPQPALHQNSPS 833
Query: 909 NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYA 968
P + +T S AQ PAT+ P P + P PP + A
Sbjct: 834 PVPSRTPTPHHTPPS--IGAQQP-------PATTIPAPVPTP-------PAMPPGPQSQA 877
Query: 969 LPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAP 1028
L P PP P ++P+ P +P P P+S QQ +A
Sbjct: 878 LHP-----------PPRQTPTPPTTQLPQQVQPSLPAAPSADQPQQQPRS---QQSTAAS 923
Query: 1029 VPLSSQSSF-PQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNI 1069
VP + PQP P QP ++ GQ PPS S +
Sbjct: 924 VPTPTAPLLPPQPATPLSQPAVSIE---GQVSNPPSTSSTEV 962
Score = 43.1 bits (100), Expect = 0.002
Identities = 68/266 (25%), Positives = 97/266 (36%), Gaps = 52/266 (19%)
Query: 848 NVNPNAAGQLPTS--PGHMHTQVPPY-----PQPQPYQ-----PAQPYPFGTGGSA---- 891
N+ PNAAG +P S PG Q P P P P P Q P T S
Sbjct: 656 NMLPNAAGMVPVSMNPGPNMGQPQPGMTSNGPLPDPSMIRGSVPNQMMPRITPQSGLNQF 715
Query: 892 --MYRPQQPVAPPTSNAYPNTPYISSASS------YTGQSQLYAAQHQASSPTSSPA--- 940
M Q P+ P + + ++ + Y + Q + Q Q T P+
Sbjct: 716 GQMSMAQPPIVPRQTPPLQHHGQLAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGM 775
Query: 941 --TSFPPPPSSG----ASFQHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKK 994
T+ P PSSG + Q P +S +PPG+ G P +
Sbjct: 776 NVTNIPLAPSSGQAPVSQAQMSSSSCPVNSPI--MPPGSQGSHIHCPQLP-------QPA 826
Query: 995 MPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQP 1054
+ +N PVP +P P P S QQ P+ +P + P +P G + P
Sbjct: 827 LHQNSPSPVPSRTP--TPHHTPPSIGAQQPPATTIPAPVPT---PPAMPPGPQSQALHPP 881
Query: 1055 LGQTGMPPSFS-----KPNIEGAPGA 1075
QT PP+ +P++ AP A
Sbjct: 882 PRQTPTPPTTQLPQQVQPSLPAAPSA 907
Score = 39.7 bits (91), Expect = 0.017
Identities = 77/319 (24%), Positives = 108/319 (33%), Gaps = 50/319 (15%)
Query: 781 QLRDRLCRAQ--GEPVAGHESPKIPYEKQQLPKGRPG---------PVAGHHQMPRVQTQ 829
QL+ RL +AQ +A + + ++Q LP P P P Q Q
Sbjct: 1817 QLQHRLQQAQMLRRRMASMQRTGVVGQQQGLPSPTPATPTTPTGQQPTTPQTPQPTSQPQ 1876
Query: 830 QYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQP------------- 876
P+ P P G V+ A T P T PP P P P
Sbjct: 1877 PTPPNSMPPYLPRTQAAGPVSQGKAAGQVTPPTPPQTAQPPLPGPPPAAVEMAMQIQRAA 1936
Query: 877 ---YQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNT----PYISSASSYTGQSQLYAAQ 929
Q A F P P+AP N P T ++ TG Q
Sbjct: 1937 ETQRQMAHVQIFQRPIQHQMPPMTPMAPMGMNPPPMTRGPSGHLEPGMGPTGMQQ-QPPW 1995
Query: 930 HQASSPTSSPATSFPPPPSSGASFQHGGP--GAPPSSSAYA----LPPGTTGPQNGWNDP 983
Q P S P P+ + QHG P AP L PGT Q
Sbjct: 1996 SQGGLPQPQQLQSGMPRPAMMSVAQHGQPLNMAPQPGLGQVGISPLKPGTVSQQ------ 2049
Query: 984 PALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLP 1043
AL + + + P + + + S I++ + ++Q+ + + Q QP +P
Sbjct: 2050 -ALQNLLRTLRSPSSPLQQQQVLS-ILHANPQLLAAFIKQRAAKYANSNPQPIPGQPGMP 2107
Query: 1044 GGQPFHGVQQPL--GQTGM 1060
GQP G+Q P GQ G+
Sbjct: 2108 QGQP--GLQPPTMPGQQGV 2124
>gi|207029439 retinoblastoma binding protein 4 isoform c [Homo
sapiens]
Length = 390
Score = 58.9 bits (141), Expect = 3e-08
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 77 YKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQN--DKHTGPVRALDVNIFQ 134
Y + ++SG L++ ++ I L+D S + K VV A+ HT V + ++
Sbjct: 146 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK-VVDAKTIFTGHTAVVEDVSWHLLH 204
Query: 135 TNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRAT 194
+L S A++ ++ IWD + T + +++C+++N + ILA+ S
Sbjct: 205 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 264
Query: 195 VWDLRKNEPIIKVSDHSNRMHCSGL---AWHPDVATQMVLASEDDRLPVIQMWDLRFASS 251
+WDLR +K+ HS H + W P T + + D RL V + + S
Sbjct: 265 LWDLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 320
Query: 252 P----------LRVLENHARGILAIAWSMADPELLLSCGKD 282
P L + H I +W+ +P ++ S +D
Sbjct: 321 PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 361
Score = 52.8 bits (125), Expect = 2e-06
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 140 SGANESEIYIWDLNNFATPM---TPGAKT------QPPEDISCIAWNRQVQHILASASPS 190
S +++ I +WD++ A P AKT ED+S W+ + + S +
Sbjct: 160 SASDDHTICLWDIS--AVPKEGKVVDAKTIFTGHTAVVEDVS---WHLLHESLFGSVADD 214
Query: 191 GRATVWDLRKN---EPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLR 247
+ +WD R N +P V H+ ++C L+++P + S D + +WDLR
Sbjct: 215 QKLMIWDTRSNNTSKPSHSVDAHTAEVNC--LSFNPYSEFILATGSADK---TVALWDLR 269
Query: 248 FASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILC--------------SNPNTG 293
L E+H I + WS + +L S G D ++ +
Sbjct: 270 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP 329
Query: 294 EVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSF 353
E+L+ +T D W P P V+ + S D + V+ + + +
Sbjct: 330 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM---------AENIYNDEDPE 380
Query: 354 GNLDPFGTG 362
G++DP G G
Sbjct: 381 GSVDPEGQG 389
>gi|207029415 retinoblastoma binding protein 4 isoform b [Homo
sapiens]
Length = 424
Score = 58.9 bits (141), Expect = 3e-08
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 77 YKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQN--DKHTGPVRALDVNIFQ 134
Y + ++SG L++ ++ I L+D S + K VV A+ HT V + ++
Sbjct: 180 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK-VVDAKTIFTGHTAVVEDVSWHLLH 238
Query: 135 TNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRAT 194
+L S A++ ++ IWD + T + +++C+++N + ILA+ S
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 195 VWDLRKNEPIIKVSDHSNRMHCSGL---AWHPDVATQMVLASEDDRLPVIQMWDLRFASS 251
+WDLR +K+ HS H + W P T + + D RL V + + S
Sbjct: 299 LWDLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 354
Query: 252 P----------LRVLENHARGILAIAWSMADPELLLSCGKD 282
P L + H I +W+ +P ++ S +D
Sbjct: 355 PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 395
Score = 52.8 bits (125), Expect = 2e-06
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 140 SGANESEIYIWDLNNFATPM---TPGAKT------QPPEDISCIAWNRQVQHILASASPS 190
S +++ I +WD++ A P AKT ED+S W+ + + S +
Sbjct: 194 SASDDHTICLWDIS--AVPKEGKVVDAKTIFTGHTAVVEDVS---WHLLHESLFGSVADD 248
Query: 191 GRATVWDLRKN---EPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLR 247
+ +WD R N +P V H+ ++C L+++P + S D + +WDLR
Sbjct: 249 QKLMIWDTRSNNTSKPSHSVDAHTAEVNC--LSFNPYSEFILATGSADK---TVALWDLR 303
Query: 248 FASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILC--------------SNPNTG 293
L E+H I + WS + +L S G D ++ +
Sbjct: 304 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP 363
Query: 294 EVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSF 353
E+L+ +T D W P P V+ + S D + V+ + + +
Sbjct: 364 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM---------AENIYNDEDPE 414
Query: 354 GNLDPFGTG 362
G++DP G G
Sbjct: 415 GSVDPEGQG 423
>gi|5032027 retinoblastoma binding protein 4 isoform a [Homo
sapiens]
Length = 425
Score = 58.9 bits (141), Expect = 3e-08
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 77 YKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQN--DKHTGPVRALDVNIFQ 134
Y + ++SG L++ ++ I L+D S + K VV A+ HT V + ++
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK-VVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 135 TNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRAT 194
+L S A++ ++ IWD + T + +++C+++N + ILA+ S
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 195 VWDLRKNEPIIKVSDHSNRMHCSGL---AWHPDVATQMVLASEDDRLPVIQMWDLRFASS 251
+WDLR +K+ HS H + W P T + + D RL V + + S
Sbjct: 300 LWDLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Query: 252 P----------LRVLENHARGILAIAWSMADPELLLSCGKD 282
P L + H I +W+ +P ++ S +D
Sbjct: 356 PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 396
Score = 52.8 bits (125), Expect = 2e-06
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 140 SGANESEIYIWDLNNFATPM---TPGAKT------QPPEDISCIAWNRQVQHILASASPS 190
S +++ I +WD++ A P AKT ED+S W+ + + S +
Sbjct: 195 SASDDHTICLWDIS--AVPKEGKVVDAKTIFTGHTAVVEDVS---WHLLHESLFGSVADD 249
Query: 191 GRATVWDLRKN---EPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLR 247
+ +WD R N +P V H+ ++C L+++P + S D + +WDLR
Sbjct: 250 QKLMIWDTRSNNTSKPSHSVDAHTAEVNC--LSFNPYSEFILATGSADK---TVALWDLR 304
Query: 248 FASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILC--------------SNPNTG 293
L E+H I + WS + +L S G D ++ +
Sbjct: 305 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP 364
Query: 294 EVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSF 353
E+L+ +T D W P P V+ + S D + V+ + + +
Sbjct: 365 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM---------AENIYNDEDPE 415
Query: 354 GNLDPFGTG 362
G++DP G G
Sbjct: 416 GSVDPEGQG 424
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 855
Score = 58.9 bits (141), Expect = 3e-08
Identities = 83/306 (27%), Positives = 107/306 (34%), Gaps = 63/306 (20%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAG--QLPTSPGHMHTQ 867
P RP P + PR H P P P+A G Q P S +
Sbjct: 194 PSARPRPPT---EGPRKSVSSASEHSTTEPSPA----ARRRPSAGGGLQRPASRSLSSSA 246
Query: 868 VP--------PYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYP------NTPYI 913
P P + P PA P G RP Q V PP +A P ++P
Sbjct: 247 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ-VTPPRKDAAPALGPLSSSPLA 305
Query: 914 SSASSYTGQSQ----LYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYAL 969
+ + S QSQ L A H +SS T AT P P S P APPS
Sbjct: 306 TPSPSAALQSQAPPTLPATPH-SSSLTCQLATPLPLAPPS--------PSAPPSLQTLPS 356
Query: 970 PPGTTGPQ-------------NGWNDPPALN-------RVPKKKKMPENFMPPVPITSPI 1009
PP T Q + + P L+ + P +P PP P SP
Sbjct: 357 PPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPP 416
Query: 1010 MNPLGDPQSQMLQQQPSAPVPLSSQSSF-PQPHLPGGQPFH-GVQQPLGQTGMPPSFSKP 1067
++PL P Q P+A Q+ F P P P PF P+ + PPS + P
Sbjct: 417 LSPLATPS----PQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPP 472
Query: 1068 NIEGAP 1073
++ P
Sbjct: 473 SLAAPP 478
Score = 50.1 bits (118), Expect = 1e-05
Identities = 78/296 (26%), Positives = 97/296 (32%), Gaps = 53/296 (17%)
Query: 799 SPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAG--Q 856
SP P Q LP P + T Q H P PP ++P A Q
Sbjct: 344 SPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA-THSFLPSPP-------LSPLATPPPQ 395
Query: 857 LPTSPGHMHTQVPPYPQPQP-YQP-AQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYIS 914
P + Q PP P P P A P P A++ Q P +PP S P+
Sbjct: 396 APPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPV-QAPFSP 454
Query: 915 SASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTT 974
AS S QA ++P PP P P +PP S + PP
Sbjct: 455 PASPPVSPSA--TPPSQAPPSLAAPPLQVPPSP----------PASPPMSPSATPPPQA- 501
Query: 975 GPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQ 1034
PP L P + P PP T P LQ PS P Q
Sbjct: 502 --------PPPLAAPPLQLAKPPPQAPPALATPP------------LQALPSPPASFPGQ 541
Query: 1035 SSF-PQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPT 1089
+ F P L P + P Q PP + P ++ P P T Q + PT
Sbjct: 542 APFSPSASL----PMSPLATPPPQA--PPVLAAPLLQVPPSPPASPTLQAPRRPPT 591
Score = 33.9 bits (76), Expect = 0.96
Identities = 53/196 (27%), Positives = 62/196 (31%), Gaps = 35/196 (17%)
Query: 800 PKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPT 859
P + Q+P P P A P P PP + P A L T
Sbjct: 472 PSLAAPPLQVP---PSPPASPPMSPSATPPPQAPPPLAAPP---LQLAKPPPQAPPALAT 525
Query: 860 SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYP--NTPYISSAS 917
P + P P P Q PF S P P+A P A P P +
Sbjct: 526 PP------LQALPSPPASFPGQA-PFSPSASL---PMSPLATPPPQAPPVLAAPLLQVPP 575
Query: 918 SYTGQSQLYAAQHQASSPTSSPATSF-------------PPPPSSGASFQHGGPG-APPS 963
S L A + PT P TS PPPPS S GP A S
Sbjct: 576 SPPASPTLQAPRRP---PTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHS 632
Query: 964 SSAYALPPGTTGPQNG 979
SSA + P G +G
Sbjct: 633 SSATSTPEELRGYDSG 648
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 58.9 bits (141), Expect = 3e-08
Identities = 83/313 (26%), Positives = 101/313 (32%), Gaps = 29/313 (9%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNV 849
QG G P+ P P+G P P G+ P+ P G PPP G
Sbjct: 37 QGPSPQGGNKPQGPPPPPGKPQGPP-PQGGNK--PQGPPPPGKPQG--PPPQGDKSRSPR 91
Query: 850 NPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPN 909
+P Q P G Q PP P +P P P G P +P PP P
Sbjct: 92 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNRPQGPPPPGKPQGPP-----PQ 144
Query: 910 TPYISSASSYTGQSQLYAAQ--HQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAY 967
S S G+ Q Q +Q P P PPP G P PP
Sbjct: 145 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKK-----PQGPPPPGKP 199
Query: 968 ALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSA 1027
PP PP + P + + PP P P P PQ Q P
Sbjct: 200 QGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP---PQGGNKPQGP-- 254
Query: 1028 PVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSL 1087
P P Q P GG + P G+ PP N +G P P G Q Q+
Sbjct: 255 PPPGKPQG----PPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP-PPAGGNPQQPQAP 309
Query: 1088 PTKKITKKPIPDE 1100
P + P P +
Sbjct: 310 PAGQPQGPPRPPQ 322
Score = 52.4 bits (124), Expect = 3e-06
Identities = 76/266 (28%), Positives = 88/266 (33%), Gaps = 38/266 (14%)
Query: 850 NPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPN 909
+P+ P P P P P P +P P P GG+ P P P P
Sbjct: 28 SPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPP--QGGNKPQGPPPPGKP--QGPPPQ 83
Query: 910 TPYISSASSYTGQSQLYAAQ--HQASSPTSSPATSFPPPPSSGASFQ----HGGPGAPP- 962
S S G+ Q Q +Q P P PPP G Q G P PP
Sbjct: 84 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPP 143
Query: 963 ---SSSAYALPPGTT--GPQNGWNDPPALNRVPKKK--------KMPENFMPPVPITSPI 1009
S + PPG P G N P P K K P+ PP P
Sbjct: 144 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGP- 202
Query: 1010 MNPLGDP--QSQMLQQQPSAPVPLSS---QSSFPQPHLPGGQPFHGVQQPLGQTGMPPSF 1064
P GD SQ +P P P Q P P P G P G +P G PP
Sbjct: 203 -PPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG----PPPP 257
Query: 1065 SKPNIEGAPGAPIGNTFQHVQSLPTK 1090
KP P A G+ Q +S P K
Sbjct: 258 GKPQ---GPPAQGGSKSQSARSPPGK 280
Score = 50.1 bits (118), Expect = 1e-05
Identities = 50/184 (27%), Positives = 63/184 (34%), Gaps = 10/184 (5%)
Query: 788 RAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ QG P G P+ P P+G P P G + P+ P G PPP G
Sbjct: 157 KPQGPPPQGGNQPQGPPPPPGKPQGPP-PQGG--KKPQGPPPPGKPQG--PPPQGDKSRS 211
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY 907
+ +P Q P G Q PP P +P P P G P +P PP
Sbjct: 212 SQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNKPQGPPPPGKPQGPPAQGGS 269
Query: 908 PNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAY 967
+ S G Q Q P PA P P + + Q GP PP
Sbjct: 270 KSQSARSPPGKPQGPPQQEGNNPQGPPP---PAGGNPQQPQAPPAGQPQGPPRPPQGGRP 326
Query: 968 ALPP 971
+ PP
Sbjct: 327 SRPP 330
>gi|18677720 WD repeat and SOCS box-containing 1 isoform 1 [Homo
sapiens]
Length = 421
Score = 58.5 bits (140), Expect = 4e-08
Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 18/202 (8%)
Query: 143 NESEIYIWDLNNFATPMTPGAKTQPPEDISC--IAWNR----QVQHILASASPSGRATVW 196
N+ +I D + + G+ P + C I W+R Q Q +LA+ +GR +W
Sbjct: 97 NKPREHIIDCGDIVWSLAFGSSV-PEKQSRCVNIEWHRFRFGQDQLLLATGLNNGRIKIW 155
Query: 197 DLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRVL 256
D+ + ++ + DH+ + L + PD + +V AS D L ++WDL+ + ++VL
Sbjct: 156 DVYTGKLLLNLVDHTEVVR--DLTFAPDGSLILVSASRDKTL---RVWDLKDDGNMMKVL 210
Query: 257 ENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNP 316
H + + A+S D +L S G + N + ++ +L + D+ C +P
Sbjct: 211 RGHQNWVYSCAFS-PDSSMLCSVGASKAVFLWNMDKYTMIRKLEGHHH---DVVACDFSP 266
Query: 317 --AVLSAASFDGRISVYSIMGG 336
A+L+ AS+D R+ ++ G
Sbjct: 267 DGALLATASYDTRVYIWDPHNG 288
Score = 44.3 bits (103), Expect = 7e-04
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 137 LVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRATVW 196
L+A+G N I IWD+ + T+ D++ + IL SAS VW
Sbjct: 142 LLATGLNNGRIKIWDVYTGKLLLNLVDHTEVVRDLT---FAPDGSLILVSASRDKTLRVW 198
Query: 197 DLRKNEPIIKV-SDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRV 255
DL+ + ++KV H N ++ A+ PD + + + + +W++ + +R
Sbjct: 199 DLKDDGNMMKVLRGHQNWVY--SCAFSPDSSMLCSVGAS----KAVFLWNMD-KYTMIRK 251
Query: 256 LENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYE 298
LE H ++A +S D LL + D ++ +P+ G++L E
Sbjct: 252 LEGHHHDVVACDFS-PDGALLATASYDTRVYIWDPHNGDILME 293
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 57.8 bits (138), Expect = 6e-08
Identities = 69/242 (28%), Positives = 86/242 (35%), Gaps = 31/242 (12%)
Query: 867 QVPPYPQPQP-YQP-AQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQ 924
Q PP P P P A P P A++ Q P +PP S P+ AS S
Sbjct: 631 QAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPV-QAPFSPPASPPVSPSA 689
Query: 925 LYAAQHQASSPTSSPATSFPPPPSSGASFQHGG---PGAPPSSSAYAL-----PPGTTGP 976
QA ++P PP P + P APP +A L PP +
Sbjct: 690 --TPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPM 747
Query: 977 QNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQM--------LQQQPSAP 1028
PP RVP P +PP P S M+PL P Q LQ PS P
Sbjct: 748 SPSATPPP---RVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPP 804
Query: 1029 VPLSSQSSF-PQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSL 1087
Q+ F P L P + P Q PP + P ++ P P T Q +
Sbjct: 805 ASFPGQAPFSPSASL----PMSPLATPPPQA--PPVLAAPLLQVPPSPPASPTLQAPRRP 858
Query: 1088 PT 1089
PT
Sbjct: 859 PT 860
Score = 51.6 bits (122), Expect = 4e-06
Identities = 61/236 (25%), Positives = 81/236 (34%), Gaps = 42/236 (17%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAG--QLPTSPGHMHTQ 867
P RP P + PR H P P P+A G Q P S +
Sbjct: 194 PSARPRPPT---EGPRKSVSSASEHSTTEPSPA----ARRRPSAGGGLQRPASRSLSSSA 246
Query: 868 VP--------PYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSY 919
P P + P PA P G RP Q V PP +A P +SS+
Sbjct: 247 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ-VTPPRKDAAPALGPLSSSPLA 305
Query: 920 TGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGPQNG 979
T SP+ + A PPP ++ P +PP ++ L P +
Sbjct: 306 T------------PSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSP----- 348
Query: 980 WNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQS 1035
+ PP+L +P P + PP T P+ P LQ P VP S S
Sbjct: 349 -SAPPSLQTLPSPPATPPSQAPPSMTTPPMQAP------PSLQTIPPIQVPHSLTS 397
Score = 50.8 bits (120), Expect = 8e-06
Identities = 86/325 (26%), Positives = 119/325 (36%), Gaps = 51/325 (15%)
Query: 771 PDNTNQPNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQ 830
PDN P L A P+A SP P Q LP P Q P T
Sbjct: 320 PDNAATPLPATLPPSPPLATPLPLAP-PSPSAPPSLQTLPSP---PATPPSQAPPSMTT- 374
Query: 831 YYPHGENPP-----PPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPF 885
P + PP PP + H +P+ Q P SP + + P A + F
Sbjct: 375 --PPMQAPPSLQTIPPIQVPHSLTSPSL--QAPPSPLALSSLQATTSLGSPTLQAT-HSF 429
Query: 886 GTGG-----SAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPA 940
T +++ P +P + P P++P + + S L + A SP SSP
Sbjct: 430 LTMSPRQTQASLTSPSRPASTP-----PDSPPLQAPLSLPASPPLQTSLSPAVSPLSSPL 484
Query: 941 TSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGPQ---NGWNDPPALNRVPKKKKMPE 997
T P S S P AP SS +PP T PPA P + +P
Sbjct: 485 TIHPLQALS--SLASHSPQAPLSS--LIMPPLETQSSLAPPSLQTPPASLTTPPLENLPS 540
Query: 998 NFMPPV-----PITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQ 1052
PP+ P+T+P + P LQ PS PL++ P P P +
Sbjct: 541 LAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPS---PLTT----PPPETPSS-----IA 588
Query: 1053 QPLGQTGMPPSFSKPNIEGAPGAPI 1077
P Q PP+ + P ++G P P+
Sbjct: 589 TPPPQA--PPALASPPLQGLPSPPL 611
Score = 50.8 bits (120), Expect = 8e-06
Identities = 51/187 (27%), Positives = 75/187 (40%), Gaps = 16/187 (8%)
Query: 896 QQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSP----ATSFP---PPPS 948
Q P A T+ N P ++ T + L H + P +P A P PPP
Sbjct: 524 QTPPASLTTPPLENLPSLAPPPLQTASAPL-TTPHLETPPCPAPCPLQAPPSPLTTPPPE 582
Query: 949 SGASFQHGGPGAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSP 1008
+ +S P APP+ ++ L + P + PP + P +P PP P SP
Sbjct: 583 TPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPP--QAPPXLALPPLQAPPSPPASP 640
Query: 1009 IMNPLGDPQSQMLQQQPSAPVPLSSQSSF-PQPHLPGGQPFH-GVQQPLGQTGMPPSFSK 1066
++PL P Q P+A Q+ F P P P PF P+ + PPS +
Sbjct: 641 PLSPLATPS----PQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAP 696
Query: 1067 PNIEGAP 1073
P++ P
Sbjct: 697 PSLAAPP 703
Score = 37.4 bits (85), Expect = 0.087
Identities = 45/153 (29%), Positives = 52/153 (33%), Gaps = 25/153 (16%)
Query: 849 VNPNAAGQLPTSP-GHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQ-----QPVAPP 902
V P+ LP SP Q PP P Q P G A + P P+A P
Sbjct: 768 VPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATP 827
Query: 903 TSNAYP--NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSF-------------PPPP 947
A P P + S L A + PT P TS PPPP
Sbjct: 828 PPQAPPVLAAPLLQVPPSPPASPTLQAPRRP---PTPGPDTSVSGPRLTLALAPGPPPPP 884
Query: 948 SSGASFQHGGPG-APPSSSAYALPPGTTGPQNG 979
S S GP A SSSA + P G +G
Sbjct: 885 SRSPSSTLSGPDLAGHSSSATSTPEELRGYDSG 917
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 57.8 bits (138), Expect = 6e-08
Identities = 66/261 (25%), Positives = 92/261 (35%), Gaps = 73/261 (27%)
Query: 840 PPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPV 899
PP GN + A G T+P + PP P P P P P+
Sbjct: 146 PPASPRLGNTS-EAHGAARTAPPRPNVPAPPPPTPPP------------------PPPPL 186
Query: 900 APPTSNAYP-NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGP 958
PP ++ P TP +S T + + P +P PPP P
Sbjct: 187 PPPLPSSSPIKTPLVSPPGPLT----------KGNLPVVAPPVPCAPPP----------P 226
Query: 959 GAPPSSSAYALPPGTTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDP-- 1016
PP + LPP + L+ K ++ +PP+P P++ P G P
Sbjct: 227 PPPPPPTPPPLPPAS-----------VLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGL 275
Query: 1017 ------QSQMLQQQPSAPVPL------SSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSF 1064
+Q Q+ P+ P PL S ++S P P LPG PL PSF
Sbjct: 276 KAEPASPAQDAQEPPAPPPPLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKS--PSF 333
Query: 1065 SKPNIEG------APGAPIGN 1079
P + AP AP G+
Sbjct: 334 QAPPQKAGAQALPAPPAPPGS 354
Score = 40.8 bits (94), Expect = 0.008
Identities = 43/154 (27%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 838 PPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPF--GTGGSAMYRP 895
PP P + +V + A + +P H+ PP P P P P YP S
Sbjct: 231 PPTPPPLPPASVLSDKAVKPQLAPLHL----PPIPPPLPLLPPCGYPGLKAEPASPAQDA 286
Query: 896 QQPVAPPTSNAYPNTPYIS-SASSYTGQSQLYAAQHQASSPTSSP--ATSFPPPPSSGAS 952
Q+P APP P PY S S + L + +P P + SF PP +
Sbjct: 287 QEPPAPPP----PLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGA 342
Query: 953 FQHGGPGAPPSSSAYALPP--GTTGPQNGWNDPP 984
P APP S + G G G +PP
Sbjct: 343 QALPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPP 376
Score = 32.0 bits (71), Expect = 3.6
Identities = 45/176 (25%), Positives = 57/176 (32%), Gaps = 22/176 (12%)
Query: 777 PNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQLPK-GRPGPVAGHHQMPRVQTQQYYPHG 835
P L D+ + Q P+ P IP LP G PG A Q Q P
Sbjct: 238 PPASVLSDKAVKPQLAPL---HLPPIPPPLPLLPPCGYPGLKA--EPASPAQDAQEPP-- 290
Query: 836 ENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRP 895
PPP + + +P A+ P PG + P P P Q P G A+ P
Sbjct: 291 --APPPPLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAPPQKAGAQALPAP 348
Query: 896 QQPVA------------PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSP 939
P P N P A S T + + Q A +PT P
Sbjct: 349 PAPPGSQPFLQKKRHGRPGAGGGKLNPPPAPPARSPTTELSSKSQQATAWTPTQQP 404
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 56.6 bits (135), Expect = 1e-07
Identities = 66/222 (29%), Positives = 77/222 (34%), Gaps = 40/222 (18%)
Query: 866 TQVPPYPQPQPYQPAQPYPFGTG---------GSAMYRPQQPVAPPTSNAYPNTPYISSA 916
T P P P PA P P +G G + P P PP P ISS
Sbjct: 562 TVPPSVPSRAPVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSP 621
Query: 917 SSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGP 976
S G + + + P S + PPPP G G P SS LP GT P
Sbjct: 622 PSLPGGTAI------SPPPPLSGDATIPPPPPLPE-----GVGIPSPSS---LPGGTAIP 667
Query: 977 QNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSS 1036
PP L P ++P PP P+ P P P P PL
Sbjct: 668 -----PPPPL---PGSARIPP---PPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPG 716
Query: 1037 F-PQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPI 1077
P P PGG G+ P GMPP P G P AP+
Sbjct: 717 IPPPPPFPGGP---GIPPPPPGMGMPP--PPPFGFGVPAAPV 753
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 56.6 bits (135), Expect = 1e-07
Identities = 66/222 (29%), Positives = 77/222 (34%), Gaps = 40/222 (18%)
Query: 866 TQVPPYPQPQPYQPAQPYPFGTG---------GSAMYRPQQPVAPPTSNAYPNTPYISSA 916
T P P P PA P P +G G + P P PP P ISS
Sbjct: 571 TVPPSVPSRAPVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSP 630
Query: 917 SSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGP 976
S G + + + P S + PPPP G G P SS LP GT P
Sbjct: 631 PSLPGGTAI------SPPPPLSGDATIPPPPPLPE-----GVGIPSPSS---LPGGTAIP 676
Query: 977 QNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSS 1036
PP L P ++P PP P+ P P P P PL
Sbjct: 677 -----PPPPL---PGSARIPP---PPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPG 725
Query: 1037 F-PQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPI 1077
P P PGG G+ P GMPP P G P AP+
Sbjct: 726 IPPPPPFPGGP---GIPPPPPGMGMPP--PPPFGFGVPAAPV 762
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,044,513
Number of Sequences: 37866
Number of extensions: 3163962
Number of successful extensions: 20587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 1390
Number of HSP's that attempted gapping in prelim test: 11702
Number of HSP's gapped (non-prelim): 5956
length of query: 1205
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1091
effective length of database: 13,930,794
effective search space: 15198496254
effective search space used: 15198496254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.