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Search of human proteins with 116256338
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
(1220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens] 2476 0.0
gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens] 2476 0.0
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 2438 0.0
gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens] 2385 0.0
gi|116256336 SEC31 homolog A isoform 4 [Homo sapiens] 1801 0.0
gi|14149696 SEC31 homolog B [Homo sapiens] 1062 0.0
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 72 4e-12
gi|171543895 ataxin 2 [Homo sapiens] 70 9e-12
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 70 2e-11
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 66 2e-10
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 65 3e-10
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 65 3e-10
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 65 3e-10
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 64 9e-10
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 63 2e-09
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 62 3e-09
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 62 3e-09
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 62 4e-09
gi|58331266 WD repeat domain 59 [Homo sapiens] 61 6e-09
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 60 1e-08
gi|50345997 E1A binding protein p300 [Homo sapiens] 60 1e-08
gi|207029439 retinoblastoma binding protein 4 isoform c [Homo sa... 59 3e-08
gi|207029415 retinoblastoma binding protein 4 isoform b [Homo sa... 59 3e-08
gi|5032027 retinoblastoma binding protein 4 isoform a [Homo sapi... 59 3e-08
gi|54860079 nadrin isoform 1 [Homo sapiens] 59 3e-08
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 59 3e-08
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 59 4e-08
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 59 4e-08
gi|18677720 WD repeat and SOCS box-containing 1 isoform 1 [Homo ... 59 4e-08
gi|163965366 nascent polypeptide-associated complex alpha subuni... 59 4e-08
>gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 2476 bits (6417), Expect = 0.0
Identities = 1220/1220 (100%), Positives = 1220/1220 (100%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA
Sbjct: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
Query: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA
Sbjct: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
Query: 961 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1020
PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI
Sbjct: 961 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1020
Query: 1021 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1080
TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS
Sbjct: 1021 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1080
Query: 1081 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1140
KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK
Sbjct: 1081 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1140
Query: 1141 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1200
RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE
Sbjct: 1141 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1200
Query: 1201 TSAFMPVLKVVLTQANKLGV 1220
TSAFMPVLKVVLTQANKLGV
Sbjct: 1201 TSAFMPVLKVVLTQANKLGV 1220
>gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 2476 bits (6417), Expect = 0.0
Identities = 1220/1220 (100%), Positives = 1220/1220 (100%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA
Sbjct: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
Query: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA
Sbjct: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
Query: 961 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1020
PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI
Sbjct: 961 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1020
Query: 1021 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1080
TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS
Sbjct: 1021 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1080
Query: 1081 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1140
KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK
Sbjct: 1081 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1140
Query: 1141 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1200
RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE
Sbjct: 1141 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1200
Query: 1201 TSAFMPVLKVVLTQANKLGV 1220
TSAFMPVLKVVLTQANKLGV
Sbjct: 1201 TSAFMPVLKVVLTQANKLGV 1220
>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
Length = 1205
Score = 2438 bits (6318), Expect = 0.0
Identities = 1205/1220 (98%), Positives = 1205/1220 (98%), Gaps = 15/1220 (1%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA
Sbjct: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
Query: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA
Sbjct: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
Query: 961 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1020
PPSSSAYALPPGT TGPQNGWNDPPALNRVPKKKKMPENFMPPVPI
Sbjct: 961 PPSSSAYALPPGT---------------TGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1005
Query: 1021 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1080
TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS
Sbjct: 1006 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1065
Query: 1081 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1140
KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK
Sbjct: 1066 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1125
Query: 1141 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1200
RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE
Sbjct: 1126 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1185
Query: 1201 TSAFMPVLKVVLTQANKLGV 1220
TSAFMPVLKVVLTQANKLGV
Sbjct: 1186 TSAFMPVLKVVLTQANKLGV 1205
>gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]
Length = 1181
Score = 2385 bits (6180), Expect = 0.0
Identities = 1181/1220 (96%), Positives = 1181/1220 (96%), Gaps = 39/1220 (3%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKK
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKK------------------------------------- 503
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
HIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 504 --HIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 561
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 562 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 621
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 622 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 681
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 682 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 741
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 742 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 801
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 900
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA
Sbjct: 802 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVA 861
Query: 901 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 960
PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA
Sbjct: 862 PPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGA 921
Query: 961 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 1020
PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI
Sbjct: 922 PPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI 981
Query: 1021 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1080
TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS
Sbjct: 982 TSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1041
Query: 1081 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1140
KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK
Sbjct: 1042 KPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTK 1101
Query: 1141 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1200
RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE
Sbjct: 1102 RKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSE 1161
Query: 1201 TSAFMPVLKVVLTQANKLGV 1220
TSAFMPVLKVVLTQANKLGV
Sbjct: 1162 TSAFMPVLKVVLTQANKLGV 1181
>gi|116256336 SEC31 homolog A isoform 4 [Homo sapiens]
Length = 1106
Score = 1801 bits (4665), Expect = 0.0
Identities = 957/1222 (78%), Positives = 983/1222 (80%), Gaps = 118/1222 (9%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK
Sbjct: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV
Sbjct: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
Query: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV
Sbjct: 181 QHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPV 240
Query: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP
Sbjct: 241 IQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELP 300
Query: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG
Sbjct: 301 TNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPFG 360
Query: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ
Sbjct: 361 TGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQ 420
Query: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN
Sbjct: 421 QQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVN 480
Query: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL
Sbjct: 481 FEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQLL 540
Query: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII
Sbjct: 541 GEHIKEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAII 600
Query: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA
Sbjct: 601 LAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYA 660
Query: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL
Sbjct: 661 KPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHPLSLQDL 720
Query: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM
Sbjct: 721 IEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIM 780
Query: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP
Sbjct: 781 QLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPP 840
Query: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYR-PQQPV 899
PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQ Q P A+ R P++
Sbjct: 841 PGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQRPQNGWNDP-----PALNRVPKKKK 895
Query: 900 APPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTS-SPATSFPPPPSSGASFQHGGP 958
P N P P S + G Q Q Q S+P S +SFP P G HG
Sbjct: 896 MP--ENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHG-- 951
Query: 959 GAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPV 1018
P G TG MP +F P
Sbjct: 952 --------VQQPLGQTG----------------------------------MPPSFSKPN 969
Query: 1019 PITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPS 1078
+P G P Q S P ++ P HL
Sbjct: 970 IEGAP-----GAPIGNTFQHVQSLPTKKITKKPIPDEHL--------------------- 1003
Query: 1079 FSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQ 1138
K E + Q S T TK+ + D L+ ++ L ++ LS P
Sbjct: 1004 ILKTTFE--------DLIQRCLSSATDPQTKRKLDDASKRLEFLYDKLREQTLS----PT 1051
Query: 1139 TKRKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNF 1198
L + ++ +E + + GL + T N+S
Sbjct: 1052 ITSGLHNIARSIE-----------TRNYSEGLTMHTHIVSTSNFS--------------- 1085
Query: 1199 SETSAFMPVLKVVLTQANKLGV 1220
ETSAFMPVLKVVLTQANKLGV
Sbjct: 1086 -ETSAFMPVLKVVLTQANKLGV 1106
>gi|14149696 SEC31 homolog B [Homo sapiens]
Length = 1179
Score = 1062 bits (2746), Expect = 0.0
Identities = 590/1257 (46%), Positives = 783/1257 (62%), Gaps = 119/1257 (9%)
Query: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSC 60
MKLKE++R A+QAWSPA +P+YLATGTSAQQLD++FSTN +LEIFE+D DPSLD+K
Sbjct: 1 MKLKELERPAVQAWSPASQYPLYLATGTSAQQLDSSFSTNGTLEIFEVDFRDPSLDLKHR 60
Query: 61 ATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQNDK 120
S+ R+HKL+WG + + SGV++ GG+NG +ILY+ + I++ KE VIAQ K
Sbjct: 61 GVLSALSRFHKLVWGSFGSGLL-ESSGVIVGGGDNGMLILYNVTHILSSGKEPVIAQKQK 119
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQ-PPEDISCIAWNRQ 179
HTG VRALD+N FQ NL+ASGA++SEI+IWDLNN PMT G+K+Q PPEDI ++WNRQ
Sbjct: 120 HTGAVRALDLNPFQGNLLASGASDSEIFIWDLNNLNVPMTLGSKSQQPPEDIKALSWNRQ 179
Query: 180 VQHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLP 239
QHIL+SA PSG+A VWDLRKNEPIIKVSDHSNRMHCSGLAWHPD+ATQ+VL SEDDRLP
Sbjct: 180 AQHILSSAHPSGKAVVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDIATQLVLCSEDDRLP 239
Query: 240 VIQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYEL 299
VIQ+WDLRFASSPL+VLE+H+RGIL+++WS AD ELLL+ KD++ILC N + EV+Y+L
Sbjct: 240 VIQLWDLRFASSPLKVLESHSRGILSVSWSQADAELLLTSAKDSQILCRNLGSSEVVYKL 299
Query: 300 PTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFGNLDPF 359
PT + WCFD+QWCPR+P+V SAASF+G IS+YS+MG S + +Q DK+SSSF
Sbjct: 300 PTQSSWCFDVQWCPRDPSVFSAASFNGWISLYSVMGRSWEVQHMRQADKISSSFSK---- 355
Query: 360 GTGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAE 419
GQPLPPLQ+P+Q AQ ++ PLKKPPKWIRRP G SF+FGGKLVTF P+H
Sbjct: 356 --GQPLPPLQVPEQVAQAPLIPPLKKPPKWIRRPTGVSFAFGGKLVTFGLPSTPAH--LV 411
Query: 420 QQQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKV 479
Q VFISQV TE EFL RS +LQ+A+ S +NYCQ K + + EK +W FLKV
Sbjct: 412 PQPCPRLVFISQVTTESEFLMRSAELQEALGSGNLLNYCQNKSQQALLQSEKMLWQFLKV 471
Query: 480 NFEDDSRGKYLELLGYRKEDLGKKIALALNKVDGANVALKDSDQVAQSDGEESPAAEEQL 539
E DSR K+L+LLGY K++L KK+A L G + + SD +++ ++
Sbjct: 472 TLEQDSRMKFLKLLGYSKDELQKKVATWLKSDVGLGESPQPKGNDLNSDRQQAFCSQAS- 530
Query: 540 LGEHIKEEKEES-----EFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNR 594
+H +E S E +P + + I ++ DIDGL++QALL G AV+LCL + R
Sbjct: 531 --KHTTKEASASSAFFDELVPQNMTPWEIPITKDIDGLLSQALLLGELGPAVELCLKEER 588
Query: 595 MADAIILAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALA 654
ADAIILA AGG +LL +TQ++Y AK ++KI+ L+ VV KNWK++V +C LKNWREALA
Sbjct: 589 FADAIILAQAGGTDLLKQTQERYLAKKKTKISSLLACVVQKNWKDVVCTCSLKNWREALA 648
Query: 655 AVLTYAKPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDGSHP 714
+LTY+ ++F LCD+LGTR+E EG L ++A LCY+C+G+VE+LV CW K P
Sbjct: 649 LLLTYSGTEKFPELCDMLGTRMEQEGSRALTSEARLCYVCSGSVERLVECWAKCHQALSP 708
Query: 715 LSLQDLIEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNT 774
++LQDL+EKV++L ++++ + + G +++QYANLLAAQGS+A A++FLP +
Sbjct: 709 MALQDLMEKVMVLNRSLEQLRGPHGVSPGPATTYRVTQYANLLAAQGSLATAMSFLPRDC 768
Query: 775 NQPNIMQLRDRLCRAQGEPVAGHESPKIPYEK---------QQLPKGRPGPVAGHH---- 821
QP + QLRDRL AQG V G +SP P+ + ++ R G H
Sbjct: 769 AQPPVQQLRDRLFHAQGSAVLGQQSPPFPFPRIVVGATLHSKETSSYRLGSQPSHQVPTP 828
Query: 822 -QMPRVQTQQYYPH----GENPPPPGFIMHGNVN------PNAAGQLPTSPGHMHTQVPP 870
PRV T Q P +P P N++ P A LP SPG P
Sbjct: 829 SPRPRVFTPQSSPAMPLAPSHPSPYQGPRTQNISDYRAPGPQAIQPLPLSPGVRPASSQP 888
Query: 871 Y---------PQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTG 921
P P + P P GS + + P S + P TP +
Sbjct: 889 QLLGGQRVQVPNPVGFPGTWPLP----GSPLPMACPGIMRPGSTSLPETPRLFPLLPLRP 944
Query: 922 QSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAAS 981
H T +P SFP P + G PGAP SS LP TTG L
Sbjct: 945 LGPGRMVSH-----TPAPPASFPVP------YLPGDPGAPCSS---VLP--TTGIL---- 984
Query: 982 ELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPS 1041
+ GPQ+ W + PA ++ K+PE FMPP PIT+P+M+ + Q + PS
Sbjct: 985 ----TPHPGPQDSWKEAPAPRGNLQRNKLPETFMPPAPITAPVMSLTPELQGIL----PS 1036
Query: 1042 APVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQS 1101
P P+SS S P PG P G +Q
Sbjct: 1037 QP-PVSSVSHAP----------------------------------PGVP-GELSLQLQH 1060
Query: 1102 LPTKKITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLEFLYDKLREQT 1161
LP +K+ +K +P EH LK++FE L+QRC SATD +TKRKL++A++RLE+LY+KL E T
Sbjct: 1061 LPPEKMERKELPPEHQSLKSSFEALLQRCSLSATDLKTKRKLEEAAQRLEYLYEKLCEGT 1120
Query: 1162 LSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSETSAFMPVLKVVLTQANKL 1218
LSP + +GLH +AR ++ ++ +GL +H + S+FSE S+FMP+LK VL A+KL
Sbjct: 1121 LSPHVVAGLHEVARCVDAGSFEQGLAVHAQVAGCSSFSEVSSFMPILKAVLIIAHKL 1177
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 71.6 bits (174), Expect = 4e-12
Identities = 75/284 (26%), Positives = 101/284 (35%), Gaps = 58/284 (20%)
Query: 834 HGENPPPPGFIMHGNVNPNAAGQ--------LPTSPGHMHTQVPPYPQPQPYQPA--QPY 883
H PPPG ++ N P G +P P H Q PP QP P QP QP
Sbjct: 29 HDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPP 88
Query: 884 PFGTGGSAMYRPQQPVAPPTSNAYP-------NTPYISSASSYTGQSQLYAAQHQASSPT 936
P ++ QQP PP ++ P P + SA + + + P
Sbjct: 89 PH----PQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPG 144
Query: 937 SSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWN 996
S P + PPP+ ++ P PPSS PP G P + +P GP G
Sbjct: 145 SGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVP-----GPGPGPK 199
Query: 997 DPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQ-P 1055
P PK KMP G P +P LS+ P+ P
Sbjct: 200 QGPGPGG-PKGGKMP-----------------GGP-------KPGGGPGLSTPGGHPKPP 234
Query: 1056 HLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHV 1099
H GG+P G Q PP + + PG P G + + +
Sbjct: 235 HRGGGEPRGGRQH------HPPYHQQHHQGPPPGGPGGRSEEKI 272
Score = 38.9 bits (89), Expect = 0.030
Identities = 50/229 (21%), Positives = 64/229 (27%), Gaps = 55/229 (24%)
Query: 793 PVAGHESPKIPY-------EKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPG--- 842
P G PK P ++QQ P +P P P Q PH + PPP
Sbjct: 49 PGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQ---PHQQQQPPPPPQD 105
Query: 843 ----FIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQP 898
+ G G P + PP P P P P P
Sbjct: 106 SSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAP 165
Query: 899 VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGP 958
P S+ P TP P PPPP + GP
Sbjct: 166 PPTPPSSGVPTTP---------------------------PQAGGPPPPPAAVP----GP 194
Query: 959 GAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKK 1007
G P PG G P ++P + G G + P + P +
Sbjct: 195 GPGPKQG-----PGPGG--PKGGKMPGGPKPGGGPGLSTPGGHPKPPHR 236
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 70.5 bits (171), Expect = 9e-12
Identities = 76/307 (24%), Positives = 117/307 (38%), Gaps = 44/307 (14%)
Query: 789 AQGEPVAG----HESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENP------ 838
A G P+A + + + Y QQ P P+ H +P Q+Q +PH +P
Sbjct: 1022 AAGPPIAATPPAYSTQYVAYSPQQFPNQ---PLVQH--VPHYQSQ--HPHVYSPVIQGNA 1074
Query: 839 ---PPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRP 895
PP G V+ +A H P P + P+ + TG A
Sbjct: 1075 RMMAPPTHAQPGLVSSSATQYGAHEQTHAMYACPKLPYNKETSPSFYFAISTGSLA---- 1130
Query: 896 QQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSP----------ATSFPP 945
Q A P + +P+TP+ +++ TGQ Q +QH S P SP A
Sbjct: 1131 -QQYAHPNATLHPHTPHPQPSATPTGQQQ---SQHGGSHPAPSPVQHHQHQAAQALHLAS 1186
Query: 946 PPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPAS-QRTGPQNGWNDPPALNRV 1004
P A + G PPS + + + PAA + + + Q + +PP + V
Sbjct: 1187 PQQQSAIYHAGLAPTPPSMTPASNTQSPQNSFPAAQQTVFTIHPSHVQPAYTNPPHMAHV 1246
Query: 1005 P----KKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGG 1060
P + +P + P+ P G PQ+ L Q P+P+S+ + FP P
Sbjct: 1247 PQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQA-ALAQSALQPIPVSTTAHFPYMTHPSV 1305
Query: 1061 QPFHGVQ 1067
Q H Q
Sbjct: 1306 QAHHQQQ 1312
Score = 34.3 bits (77), Expect = 0.74
Identities = 43/208 (20%), Positives = 65/208 (31%), Gaps = 11/208 (5%)
Query: 833 PHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAM 892
P + PP + N P A PT P P P P P P T M
Sbjct: 557 PSPSSRPPSRYQSGPNSLPPRAAT-PTRPPSRPPSRPSRPPSHPSAHGSPAPVSTMPKRM 615
Query: 893 YRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGAS 952
P P + +P +S+ + + + S + P P + +S
Sbjct: 616 SSEGPPRMSPKAQRHPRNHRVSAGRGSISSGLEFVSHNPPSEAATPPVARTSPSGGTWSS 675
Query: 953 FQHGGPGAPPSSSAYALP-PGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMP 1011
G P P + P + G P+ L PQ G A+ +P P
Sbjct: 676 VVSGVPRLSPKTHRPRSPRQNSIGNTPSGPVL-----ASPQAGIIPTEAV-AMPIPAASP 729
Query: 1012 ENFMPPVPITSPIMNPLGDPQSQMLQQQ 1039
P P ++ + P + + LQ Q
Sbjct: 730 ---TPASPASNRAVTPSSEAKDSRLQDQ 754
Score = 32.7 bits (73), Expect = 2.2
Identities = 46/200 (23%), Positives = 65/200 (32%), Gaps = 33/200 (16%)
Query: 860 SPGHMHTQVPPYPQPQPYQPAQPYP------FGTGGSA--MYRPQQPVAPPTSNAYPNTP 911
+PG + PP P P P Q P FG+ G+ +RP P P
Sbjct: 46 APGPYPSAAPPPPGPGPPPSRQSSPPSASDCFGSNGNGGGAFRPGSRRLLGLGG--PPRP 103
Query: 912 YISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPP 971
++ AA +AS P + PP SG S PG P + P
Sbjct: 104 FVVLLLPLASPGAPPAAPTRAS-----PLGARASPPRSGVSLARPAPGCPRPACEPVYGP 158
Query: 972 GTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDP 1031
T P + Q+ Q ++ + P P + + P G
Sbjct: 159 LTMSLKPQQQQQQQQQQQQQQ---------------QQQQQQQQQPPPAAANVRKPGG-- 201
Query: 1032 QSQMLQQQPSAPVPLSSQSS 1051
S +L +AP P SS S
Sbjct: 202 -SGLLASPAAAPSPSSSSVS 220
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 69.7 bits (169), Expect = 2e-11
Identities = 79/309 (25%), Positives = 107/309 (34%), Gaps = 62/309 (20%)
Query: 806 KQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMH 865
+QQ P+G Q+P P G PPP G + N + PG M
Sbjct: 295 QQQQPQGIRPQFTAPTQVPVPPGWNQLPSGALQPPPAQGSLGTMTANQGWKKAPLPGPMQ 354
Query: 866 TQVPPYPQ----PQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTG 921
Q+ P P P PYPFG+ QQ S A+ N P +S+ +T
Sbjct: 355 QQLQARPSLATVQTPSHPPPPYPFGS--------QQ-----ASQAHTNFPQMSNPGQFTA 401
Query: 922 --QSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPA 979
L + +P P + P SS +SFQ G P + P+ +
Sbjct: 402 PQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVN-------------- 447
Query: 980 ASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGD-----PQSQ 1034
Q+ GP R P+ +P+ F PV +SP NP+ P
Sbjct: 448 ----QTQQQMGP-----------RPPQNNPLPQGFQQPV--SSPGRNPMVQQGNVPPNFM 490
Query: 1035 MLQQQPSAPVPLS---SQSSFPQPHLPGGQPFHGVQQPLGQTGMPPS--FSKPNIEGAPG 1089
++QQQP P S P+ PG G P G PS + P GAP
Sbjct: 491 VMQQQPPNQGPQSLHPGLGGMPKRLPPGFSA--GQANPNFMQGQVPSTTATTPGNSGAPQ 548
Query: 1090 APIGNTFQH 1098
QH
Sbjct: 549 LQANQNVQH 557
Score = 48.1 bits (113), Expect = 5e-05
Identities = 84/378 (22%), Positives = 135/378 (35%), Gaps = 52/378 (13%)
Query: 762 SIAAALAFLPDNTNQPNI--------MQLRDRLCRAQGEPVAGHESPKIPYEKQQLPKGR 813
S+AA + DN N+ Q R + + V E + E Q G+
Sbjct: 1404 SVAAVGGVVEDNKESLNVPQDSDCQNSQSRKEQVNIELKAVPAQEVKMVVPEDQSKKDGQ 1463
Query: 814 PGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQV-PPYP 872
P + +++P V+ + P + N A PG +V PP
Sbjct: 1464 P---SDPNKLPSVEENKNLVSPAMREAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPPVV 1520
Query: 873 QPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNT---PYISSASSYTGQSQLYAAQ 929
+ + A P S+ P + P SN ++ P +S SS S
Sbjct: 1521 SGEDLKKASVIPTLQDLSSSKEPSNSLNLPHSNELCSSLVHPELSEVSSNVAPS----IP 1576
Query: 930 HQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPP-------GTTGTLPAA-- 980
S P SS + S P PP+ F P ++++ ALP T T+P A
Sbjct: 1577 PVMSRPVSSSSISTPLPPNQITVFVTSNPITTSANTSAALPTHLQSALMSTVVTMPNAGS 1636
Query: 981 ----SELPASQRTGPQNGWNDPPALNR---VPKKKKMPENFMPPVPITS---------PI 1024
SE ++ ++ + + P +N + K + +P P+T+ +
Sbjct: 1637 KVMVSEGQSAAQSNARPQFITPVFINSSSIIQVMKGSQPSTIPAAPLTTNSGLMPPSVAV 1696
Query: 1025 MNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNI 1084
+ PL PQ+ SAPVP ++ SS P P++ G+P L P P
Sbjct: 1697 VGPLHIPQNIKFS---SAPVPPNALSSSPAPNIQTGRPL-----VLSSRATPVQLPSPPC 1748
Query: 1085 EGAPGAPIGNTFQHVQSL 1102
+P P Q V+ L
Sbjct: 1749 TSSPVVPSHPPVQQVKEL 1766
Score = 46.6 bits (109), Expect = 1e-04
Identities = 58/232 (25%), Positives = 85/232 (36%), Gaps = 41/232 (17%)
Query: 800 PKIPYEK---QQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPG-------------- 842
P P E+ QQ+P VA Q P+ Q Q P + PPPP
Sbjct: 974 PSQPVEQRPLQQMPPQLMQHVAPPPQPPQQQPQPQLPQQQQPPPPSQPQSQQQQQQQQQM 1033
Query: 843 -FIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQP-AQPYPFGTGGS--AMYRPQQP 898
++ +P + +LP S +P P P +Q P GS M Q P
Sbjct: 1034 MMMLMMQQDPKSV-RLPVSQN-------VHPPRGPLNPDSQRMPMQQSGSVPVMVSLQGP 1085
Query: 899 VAPPTSNAYPNTPY-ISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGG 957
+ P S P +++ + +Y Q +P+SSP P + S
Sbjct: 1086 ASVPPSPDKQRMPMPVNTPLGSNSRKMVY--QESPQNPSSSPLAEMASLPEASGSEAPSV 1143
Query: 958 PGAPPSSSAYALPPGT----TGTLPAASELPASQRTGPQNGWNDPPALNRVP 1005
PG P + ++ + P TG P S L A+Q PQ P +N +P
Sbjct: 1144 PGGPNNMPSHVVLPQNQLMMTGPKPGPSPLSATQGATPQQ-----PPVNSLP 1190
Score = 38.5 bits (88), Expect = 0.039
Identities = 74/298 (24%), Positives = 93/298 (31%), Gaps = 65/298 (21%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHG----ENPPPPGFIMHGNVNPNAAGQLPTSPGHMH 865
PK + P + + T P G + PP PG G N+ +LP
Sbjct: 914 PKKKKPPRKKKNSQQDLNTPDTRPAGLEEADQPPLPG--EQGINLDNSGPKLP----EFS 967
Query: 866 TQVPPYP-QPQPYQPAQPYPFGTGGSAMYRPQ--QPVAPPTSNAYPNTPYISSASSYTGQ 922
+ P YP QP +P Q P PQ Q VAPP P P
Sbjct: 968 NRPPGYPSQPVEQRPLQQMP----------PQLMQHVAPP-----PQPP----------- 1001
Query: 923 SQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASE 982
Q P PPPPS S Q + P +
Sbjct: 1002 --------QQQPQPQLPQQQQPPPPSQPQSQQQ------QQQQQQMMMMLMMQQDPKSVR 1047
Query: 983 LPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQP-S 1041
LP SQ P G LN P ++MP VP+ + P P S Q+ P
Sbjct: 1048 LPVSQNVHPPRG-----PLN--PDSQRMPMQQSGSVPVMVSLQGPASVPPSPDKQRMPMP 1100
Query: 1042 APVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHV 1099
PL S S + + P + PL + P S PG P N HV
Sbjct: 1101 VNTPLGSNS---RKMVYQESPQNPSSSPLAEMASLPEASGSEAPSVPGGP-NNMPSHV 1154
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 66.2 bits (160), Expect = 2e-10
Identities = 99/366 (27%), Positives = 118/366 (32%), Gaps = 52/366 (14%)
Query: 788 RAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ QG P G P+ P P+G P P G+ P+ P G PPP G
Sbjct: 56 KPQGPPPQGGNQPQGPPPPPGKPQGPP-PQGGNK--PQGPPPPGKPQG--PPPQGDKSRS 110
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY 907
+P Q P G Q PP P P +P P P G +PQ P P
Sbjct: 111 PRSPPGKPQGPPPQGGNQPQGPP---PPPGKPQGPPPQGGN-----KPQGPPPPGKPQGP 162
Query: 908 PNTPYISSASSYT--GQSQLYAAQ--HQASSPTSSPATSFPPPPSSGASFQH----GGPG 959
P S SS + G+ Q Q +Q P P PPP G Q G P
Sbjct: 163 PPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 222
Query: 960 APP------SSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPEN 1013
PP S SA + P G P P P PP P+ P
Sbjct: 223 GPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 282
Query: 1014 FMPPVP--------ITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQ----------P 1055
P P SP P G P Q Q P P Q PQ P
Sbjct: 283 PQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 342
Query: 1056 HLPGGQPFHG------VQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITK 1109
P G P G + P G+ PP N +G P P G Q Q+ P +
Sbjct: 343 GKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPP-PPAGGNPQQPQAPPAGQPQG 401
Query: 1110 KPIPDE 1115
P P +
Sbjct: 402 PPRPPQ 407
Score = 57.8 bits (138), Expect = 6e-08
Identities = 73/265 (27%), Positives = 88/265 (33%), Gaps = 31/265 (11%)
Query: 838 PPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQ 897
PP G G +P Q P G Q PP P +P P P G P +
Sbjct: 40 PPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNKPQGPPPPGK 97
Query: 898 PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQ--HQASSPTSSPATSFPPPPSSGASFQH 955
P PP P S S G+ Q Q +Q P P PPP G Q
Sbjct: 98 PQGPP-----PQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ- 151
Query: 956 GGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMP---- 1011
G PP PP ++ P + P G N P P K + P
Sbjct: 152 ---GPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 208
Query: 1012 --ENFMPPVPITSPIMNPLGDPQSQMLQQ---QPSAPVPLSS---QSSFPQPHLPGGQPF 1063
+ PP P P GD +SQ + +P P P Q P P P G P
Sbjct: 209 GNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 268
Query: 1064 HGVQQPLGQTGMPPSFSKPNIEGAP 1088
G +P G PP KP +G P
Sbjct: 269 QGGNKPQG----PPPPGKP--QGPP 287
Score = 46.2 bits (108), Expect = 2e-04
Identities = 49/184 (26%), Positives = 62/184 (33%), Gaps = 9/184 (4%)
Query: 788 RAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ QG P G P+ P P+G P P G+ P+ P G PP G
Sbjct: 241 KPQGPPPQGGNQPQGPPPPPGKPQGPP-PQGGNK--PQGPPPPGKPQGP-PPQGGSKSRS 296
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY 907
+ +P Q P G Q PP P +P P P G P +P PP
Sbjct: 297 SRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNKPQGPPPPGKPQGPPPQGGS 354
Query: 908 PNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAY 967
+ S G Q Q P PA P P + + Q GP PP
Sbjct: 355 KSRSARSPPGKPQGPPQQEGNNPQGPPP---PAGGNPQQPQAPPAGQPQGPPRPPQGGRP 411
Query: 968 ALPP 971
+ PP
Sbjct: 412 SRPP 415
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 65.5 bits (158), Expect = 3e-10
Identities = 100/354 (28%), Positives = 141/354 (39%), Gaps = 58/354 (16%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQY-YPHGENPPPPGFIMHGN 848
QG P A ++P P Q P P P Q P + Q+ PH PPP H
Sbjct: 222 QGSPTAS-QAPNQP----QAPTA-PVPHTHIQQAPALHPQRPPSPH----PPPHPSPHPP 271
Query: 849 VNP--NAAGQLPTSPGH----MHTQVPPYPQ-----PQPYQPAQPYPFGTGGSAMYRPQQ 897
+ P +AGQ P++P H +H Q PP P P P P PFG A + Q
Sbjct: 272 LQPLTGSAGQ-PSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQAS-QGQA 329
Query: 898 PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGG 957
P+ + AYP+T AS QSQ + Q P PPP++
Sbjct: 330 PLGTSPAAAYPHTSLQLPASQSALQSQ-QPPREQPLPPAPLAMPHIKPPPTTPIP----- 383
Query: 958 PGAPPSSSAYALPPGTTGTLPAA--SELPASQRTGPQNGWND--PPALNRVPKKKKMPEN 1013
P+ A+ PP +G P + + LP P + + PP+ + P + MP++
Sbjct: 384 --QLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHP-PPLQLMPQS 440
Query: 1014 FMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQ------PHLPGGQPFHGVQ 1067
P+ S P G QSQ L P++ P PQ P +PGG P +
Sbjct: 441 ----QPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPP--PIT 494
Query: 1068 QP-LGQTGMPP----SFSKPNIEGAPGAPIGNTFQHVQS--LPTKKITKKPIPD 1114
P T PP + ++P GA A G + S LPT +I ++ + D
Sbjct: 495 PPTCPSTSTPPAGPGTSAQPPCSGA--AASGGSIAGGSSCPLPTVQIKEEALDD 546
Score = 55.5 bits (132), Expect = 3e-07
Identities = 74/297 (24%), Positives = 102/297 (34%), Gaps = 43/297 (14%)
Query: 840 PPGFIMHGNVNPNAAGQLPT-SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQP 898
P G + P QLPT P T VPP P T A +PQ P
Sbjct: 190 PTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSP------------TASQAPNQPQAP 237
Query: 899 VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHG-G 957
AP P + + + + H P + A P PS HG G
Sbjct: 238 TAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQ-PSAPSHAQPPLHGQG 296
Query: 958 PGAPPSSSAYAL-----PPGTTGTLPAASELPASQRTGPQNGWND-----PPALNRVPKK 1007
P P S A L PP G P AS+ A T P + P + + + +
Sbjct: 297 PPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQ 356
Query: 1008 KKMPENFMPPVPITSPIMNP--------LGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPG 1059
+ E +PP P+ P + P L PQ+ S P P S ++ P P P
Sbjct: 357 QPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPP--PA 414
Query: 1060 GQPFHGVQQPLGQTGMPPSF-----SKPNIEGAPGAPIGNTFQHVQSLPTKKITKKP 1111
+P + + PP S+P + +P P G T Q+LP + P
Sbjct: 415 LKPLSSLSTHHPPSAHPPPLQLMPQSQP-LPSSPAQPPGLT--QSQNLPPPPASHPP 468
Score = 52.0 bits (123), Expect = 3e-06
Identities = 64/246 (26%), Positives = 84/246 (34%), Gaps = 43/246 (17%)
Query: 903 TSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
TS + P+ S S + Q Q+ QA P T P PSS P P
Sbjct: 157 TSPSIPSPQDNESDSDSSAQQQML----QAQPPALQAPTGVTPAPSSAPPGTPQLPTPGP 212
Query: 963 SSSAYALPPGTTGTLPAASELP-ASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPIT 1021
+ SA A+PP + T A P A P PAL+ ++ P PP P
Sbjct: 213 TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALH----PQRPPSPHPPPHPSP 268
Query: 1022 SPIMNPL----GDP---------------------QSQMLQQQPSAPVPLSSQSSFPQPH 1056
P + PL G P Q+ L Q P P P Q
Sbjct: 269 HPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQ 328
Query: 1057 LPGG------QPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKK 1110
P G P +Q P Q+ + S P + P AP+ H++ PT I +
Sbjct: 329 APLGTSPAAAYPHTSLQLPASQSAL-QSQQPPREQPLPPAPL--AMPHIKPPPTTPIPQL 385
Query: 1111 PIPDEH 1116
P P H
Sbjct: 386 PAPQAH 391
Score = 49.7 bits (117), Expect = 2e-05
Identities = 64/244 (26%), Positives = 95/244 (38%), Gaps = 42/244 (17%)
Query: 789 AQGEPVAGHESPKIPYEKQQLPK-GRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ +P + P P+ Q P PGP P+ +Q P G +P
Sbjct: 286 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQA-SQGQAPLGTSPAA------- 337
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQP-AQPYPFGTGGSAMYRPQQPVAP-PTSN 905
P+ + QLP S + +Q PP QP P P A P+ P P+ P
Sbjct: 338 -AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPH-------IKPPPTTPIPQLPAPQ 389
Query: 906 AYPNTPYISSASSYTGQSQL---YAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
A+ + P++S S ++ + L A + +S T P ++ PPP P + P
Sbjct: 390 AHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQL-------MPQSQP 442
Query: 963 SSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRV-PKKKKMPENFMP--PVP 1019
S+ A PPG T SQ P + P L++V P+ F+P P P
Sbjct: 443 LPSSPAQPPGLT----------QSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPP 492
Query: 1020 ITSP 1023
IT P
Sbjct: 493 ITPP 496
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 65.5 bits (158), Expect = 3e-10
Identities = 100/354 (28%), Positives = 141/354 (39%), Gaps = 58/354 (16%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQY-YPHGENPPPPGFIMHGN 848
QG P A ++P P Q P P P Q P + Q+ PH PPP H
Sbjct: 776 QGSPTAS-QAPNQP----QAPTA-PVPHTHIQQAPALHPQRPPSPH----PPPHPSPHPP 825
Query: 849 VNP--NAAGQLPTSPGH----MHTQVPPYPQ-----PQPYQPAQPYPFGTGGSAMYRPQQ 897
+ P +AGQ P++P H +H Q PP P P P P PFG A + Q
Sbjct: 826 LQPLTGSAGQ-PSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQAS-QGQA 883
Query: 898 PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGG 957
P+ + AYP+T AS QSQ + Q P PPP++
Sbjct: 884 PLGTSPAAAYPHTSLQLPASQSALQSQ-QPPREQPLPPAPLAMPHIKPPPTTPIP----- 937
Query: 958 PGAPPSSSAYALPPGTTGTLPAA--SELPASQRTGPQNGWND--PPALNRVPKKKKMPEN 1013
P+ A+ PP +G P + + LP P + + PP+ + P + MP++
Sbjct: 938 --QLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHP-PPLQLMPQS 994
Query: 1014 FMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQ------PHLPGGQPFHGVQ 1067
P+ S P G QSQ L P++ P PQ P +PGG P +
Sbjct: 995 ----QPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPP--PIT 1048
Query: 1068 QP-LGQTGMPP----SFSKPNIEGAPGAPIGNTFQHVQS--LPTKKITKKPIPD 1114
P T PP + ++P GA A G + S LPT +I ++ + D
Sbjct: 1049 PPTCPSTSTPPAGPGTSAQPPCSGA--AASGGSIAGGSSCPLPTVQIKEEALDD 1100
Score = 55.5 bits (132), Expect = 3e-07
Identities = 74/297 (24%), Positives = 102/297 (34%), Gaps = 43/297 (14%)
Query: 840 PPGFIMHGNVNPNAAGQLPT-SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQP 898
P G + P QLPT P T VPP P T A +PQ P
Sbjct: 744 PTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSP------------TASQAPNQPQAP 791
Query: 899 VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHG-G 957
AP P + + + + H P + A P PS HG G
Sbjct: 792 TAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQ-PSAPSHAQPPLHGQG 850
Query: 958 PGAPPSSSAYAL-----PPGTTGTLPAASELPASQRTGPQNGWND-----PPALNRVPKK 1007
P P S A L PP G P AS+ A T P + P + + + +
Sbjct: 851 PPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQ 910
Query: 1008 KKMPENFMPPVPITSPIMNP--------LGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPG 1059
+ E +PP P+ P + P L PQ+ S P P S ++ P P P
Sbjct: 911 QPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPP--PA 968
Query: 1060 GQPFHGVQQPLGQTGMPPSF-----SKPNIEGAPGAPIGNTFQHVQSLPTKKITKKP 1111
+P + + PP S+P + +P P G T Q+LP + P
Sbjct: 969 LKPLSSLSTHHPPSAHPPPLQLMPQSQP-LPSSPAQPPGLT--QSQNLPPPPASHPP 1022
Score = 52.0 bits (123), Expect = 3e-06
Identities = 64/246 (26%), Positives = 84/246 (34%), Gaps = 43/246 (17%)
Query: 903 TSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
TS + P+ S S + Q Q+ QA P T P PSS P P
Sbjct: 711 TSPSIPSPQDNESDSDSSAQQQML----QAQPPALQAPTGVTPAPSSAPPGTPQLPTPGP 766
Query: 963 SSSAYALPPGTTGTLPAASELP-ASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPIT 1021
+ SA A+PP + T A P A P PAL+ ++ P PP P
Sbjct: 767 TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALH----PQRPPSPHPPPHPSP 822
Query: 1022 SPIMNPL----GDP---------------------QSQMLQQQPSAPVPLSSQSSFPQPH 1056
P + PL G P Q+ L Q P P P Q
Sbjct: 823 HPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQ 882
Query: 1057 LPGG------QPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKK 1110
P G P +Q P Q+ + S P + P AP+ H++ PT I +
Sbjct: 883 APLGTSPAAAYPHTSLQLPASQSAL-QSQQPPREQPLPPAPL--AMPHIKPPPTTPIPQL 939
Query: 1111 PIPDEH 1116
P P H
Sbjct: 940 PAPQAH 945
Score = 49.7 bits (117), Expect = 2e-05
Identities = 64/244 (26%), Positives = 95/244 (38%), Gaps = 42/244 (17%)
Query: 789 AQGEPVAGHESPKIPYEKQQLPK-GRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ +P + P P+ Q P PGP P+ +Q P G +P
Sbjct: 840 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQA-SQGQAPLGTSPAA------- 891
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQP-AQPYPFGTGGSAMYRPQQPVAP-PTSN 905
P+ + QLP S + +Q PP QP P P A P+ P P+ P
Sbjct: 892 -AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPH-------IKPPPTTPIPQLPAPQ 943
Query: 906 AYPNTPYISSASSYTGQSQL---YAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
A+ + P++S S ++ + L A + +S T P ++ PPP P + P
Sbjct: 944 AHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQL-------MPQSQP 996
Query: 963 SSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRV-PKKKKMPENFMP--PVP 1019
S+ A PPG T SQ P + P L++V P+ F+P P P
Sbjct: 997 LPSSPAQPPGLT----------QSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPP 1046
Query: 1020 ITSP 1023
IT P
Sbjct: 1047 ITPP 1050
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 65.5 bits (158), Expect = 3e-10
Identities = 100/354 (28%), Positives = 141/354 (39%), Gaps = 58/354 (16%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQY-YPHGENPPPPGFIMHGN 848
QG P A ++P P Q P P P Q P + Q+ PH PPP H
Sbjct: 776 QGSPTAS-QAPNQP----QAPTA-PVPHTHIQQAPALHPQRPPSPH----PPPHPSPHPP 825
Query: 849 VNP--NAAGQLPTSPGH----MHTQVPPYPQ-----PQPYQPAQPYPFGTGGSAMYRPQQ 897
+ P +AGQ P++P H +H Q PP P P P P PFG A + Q
Sbjct: 826 LQPLTGSAGQ-PSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQAS-QGQA 883
Query: 898 PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGG 957
P+ + AYP+T AS QSQ + Q P PPP++
Sbjct: 884 PLGTSPAAAYPHTSLQLPASQSALQSQ-QPPREQPLPPAPLAMPHIKPPPTTPIP----- 937
Query: 958 PGAPPSSSAYALPPGTTGTLPAA--SELPASQRTGPQNGWND--PPALNRVPKKKKMPEN 1013
P+ A+ PP +G P + + LP P + + PP+ + P + MP++
Sbjct: 938 --QLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHP-PPLQLMPQS 994
Query: 1014 FMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQ------PHLPGGQPFHGVQ 1067
P+ S P G QSQ L P++ P PQ P +PGG P +
Sbjct: 995 ----QPLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPP--PIT 1048
Query: 1068 QP-LGQTGMPP----SFSKPNIEGAPGAPIGNTFQHVQS--LPTKKITKKPIPD 1114
P T PP + ++P GA A G + S LPT +I ++ + D
Sbjct: 1049 PPTCPSTSTPPAGPGTSAQPPCSGA--AASGGSIAGGSSCPLPTVQIKEEALDD 1100
Score = 55.5 bits (132), Expect = 3e-07
Identities = 74/297 (24%), Positives = 102/297 (34%), Gaps = 43/297 (14%)
Query: 840 PPGFIMHGNVNPNAAGQLPT-SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQP 898
P G + P QLPT P T VPP P T A +PQ P
Sbjct: 744 PTGVTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSP------------TASQAPNQPQAP 791
Query: 899 VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHG-G 957
AP P + + + + H P + A P PS HG G
Sbjct: 792 TAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQ-PSAPSHAQPPLHGQG 850
Query: 958 PGAPPSSSAYAL-----PPGTTGTLPAASELPASQRTGPQNGWND-----PPALNRVPKK 1007
P P S A L PP G P AS+ A T P + P + + + +
Sbjct: 851 PPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQ 910
Query: 1008 KKMPENFMPPVPITSPIMNP--------LGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPG 1059
+ E +PP P+ P + P L PQ+ S P P S ++ P P P
Sbjct: 911 QPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPP--PA 968
Query: 1060 GQPFHGVQQPLGQTGMPPSF-----SKPNIEGAPGAPIGNTFQHVQSLPTKKITKKP 1111
+P + + PP S+P + +P P G T Q+LP + P
Sbjct: 969 LKPLSSLSTHHPPSAHPPPLQLMPQSQP-LPSSPAQPPGLT--QSQNLPPPPASHPP 1022
Score = 52.0 bits (123), Expect = 3e-06
Identities = 64/246 (26%), Positives = 84/246 (34%), Gaps = 43/246 (17%)
Query: 903 TSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
TS + P+ S S + Q Q+ QA P T P PSS P P
Sbjct: 711 TSPSIPSPQDNESDSDSSAQQQML----QAQPPALQAPTGVTPAPSSAPPGTPQLPTPGP 766
Query: 963 SSSAYALPPGTTGTLPAASELP-ASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPIT 1021
+ SA A+PP + T A P A P PAL+ ++ P PP P
Sbjct: 767 TPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALH----PQRPPSPHPPPHPSP 822
Query: 1022 SPIMNPL----GDP---------------------QSQMLQQQPSAPVPLSSQSSFPQPH 1056
P + PL G P Q+ L Q P P P Q
Sbjct: 823 HPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQ 882
Query: 1057 LPGG------QPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKK 1110
P G P +Q P Q+ + S P + P AP+ H++ PT I +
Sbjct: 883 APLGTSPAAAYPHTSLQLPASQSAL-QSQQPPREQPLPPAPL--AMPHIKPPPTTPIPQL 939
Query: 1111 PIPDEH 1116
P P H
Sbjct: 940 PAPQAH 945
Score = 49.7 bits (117), Expect = 2e-05
Identities = 64/244 (26%), Positives = 95/244 (38%), Gaps = 42/244 (17%)
Query: 789 AQGEPVAGHESPKIPYEKQQLPK-GRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ +P + P P+ Q P PGP P+ +Q P G +P
Sbjct: 840 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQA-SQGQAPLGTSPAA------- 891
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQP-AQPYPFGTGGSAMYRPQQPVAP-PTSN 905
P+ + QLP S + +Q PP QP P P A P+ P P+ P
Sbjct: 892 -AYPHTSLQLPASQSALQSQQPPREQPLPPAPLAMPH-------IKPPPTTPIPQLPAPQ 943
Query: 906 AYPNTPYISSASSYTGQSQL---YAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPP 962
A+ + P++S S ++ + L A + +S T P ++ PPP P + P
Sbjct: 944 AHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQL-------MPQSQP 996
Query: 963 SSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRV-PKKKKMPENFMP--PVP 1019
S+ A PPG T SQ P + P L++V P+ F+P P P
Sbjct: 997 LPSSPAQPPGLT----------QSQNLPPPPASHPPTGLHQVAPQPPFAQHPFVPGGPPP 1046
Query: 1020 ITSP 1023
IT P
Sbjct: 1047 ITPP 1050
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapiens]
Length = 816
Score = 63.9 bits (154), Expect = 9e-10
Identities = 80/293 (27%), Positives = 106/293 (36%), Gaps = 52/293 (17%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAG--QLPTSPGHMHTQ 867
P RP P + PR H P P P+A G Q P S +
Sbjct: 185 PSARPRPPT---EGPRKSVSSASEHSTTEPSPA----ARRRPSAGGGLQRPASRSLSSSA 237
Query: 868 VP--------PYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSY 919
P P + P PA P G RP Q V PP +A P +SS
Sbjct: 238 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ-VTPPRKDAAPALGPLSS---- 292
Query: 920 TGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQ--HGGPGAPPSSSAYALPPGTTGTL 977
SP ++P+ S PP PS+ S Q P PPS + +L G+
Sbjct: 293 --------------SPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSL--GSPTLQ 336
Query: 978 PAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQ 1037
S LP+ P + PP + P +P PP P SP ++PL P
Sbjct: 337 ATHSFLPSP----PLSPLATPPP--QAPPALALPPLQAPPSPPASPPLSPLATPS----P 386
Query: 1038 QQPSAPVPLSSQSSF-PQPHLPGGQPFH-GVQQPLGQTGMPPSFSKPNIEGAP 1088
Q P+A Q+ F P P P PF P+ + PPS + P++ P
Sbjct: 387 QAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPP 439
Score = 55.5 bits (132), Expect = 3e-07
Identities = 80/318 (25%), Positives = 110/318 (34%), Gaps = 77/318 (24%)
Query: 851 PNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQP-------------------YPFGTGGSA 891
P+A G P +P H P P+P+ Q +P P T +
Sbjct: 248 PSARGT-PRAPAH-----PSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPS 301
Query: 892 MYRPQQPVAPPTSNAYPNTPYI--SSASSYTGQSQLYAAQHQASSPTSSPATSFPP---- 945
P P APP+ P+ P S A++ G L A SP SP + PP
Sbjct: 302 A--PPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPP 359
Query: 946 ---------PPSSGAS-----FQHGGPGAPPSSSAYALP----PGTTGTLPAASELPASQ 987
PPS AS P AP + + + L P + + A PAS
Sbjct: 360 ALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASP 419
Query: 988 RTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMN-----------PLGDPQSQML 1036
P PP+ + P P +PP P SP M+ PL P Q+
Sbjct: 420 PVSPSA---TPPS--QAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLA 474
Query: 1037 QQQPSAPVPLSSQ--SSFPQP--HLPGGQPFH-GVQQPLGQTGMPPS-----FSKPNIEG 1086
+ P AP L++ + P P PG PF P+ PP + P ++
Sbjct: 475 KPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQV 534
Query: 1087 APGAPIGNTFQHVQSLPT 1104
P P T Q + PT
Sbjct: 535 PPSPPASPTLQAPRRPPT 552
Score = 45.1 bits (105), Expect = 4e-04
Identities = 57/222 (25%), Positives = 74/222 (33%), Gaps = 34/222 (15%)
Query: 800 PKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGN--VNPNAA--G 855
P P P P P A + + + P P F + V+P+A
Sbjct: 370 PSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPS 429
Query: 856 QLPTSPGHMHTQVPPYPQPQPYQ-------PAQPYPFGTGGSAMYRPQQPVAPPTSNAYP 908
Q P S QVPP P P P P P + +P P APP P
Sbjct: 430 QAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPP-PQAPPALATPP 488
Query: 909 NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPP---------PPSSGASFQHGGPG 959
S +S+ GQ+ + SP ++P PP PPS AS P
Sbjct: 489 LQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR 548
Query: 960 APPSSS----------AYALPPGTTGTLPAASELPASQRTGP 991
PP+ AL PG P S P+S +GP
Sbjct: 549 RPPTPGPDTSVSGPRLTLALAPGPP---PPPSRSPSSTLSGP 587
Score = 33.1 bits (74), Expect = 1.7
Identities = 60/233 (25%), Positives = 70/233 (30%), Gaps = 46/233 (19%)
Query: 800 PKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPT 859
P + Q+P P P A P P PP + P A L T
Sbjct: 433 PSLAAPPLQVP---PSPPASPPMSPSATPPPQAPPPLAAPP---LQLAKPPPQAPPALAT 486
Query: 860 SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYP--NTPYISSAS 917
P + P P P Q PF S P P+A P A P P +
Sbjct: 487 PP------LQALPSPPASFPGQA-PFSPSASL---PMSPLATPPPQAPPVLAAPLLQVPP 536
Query: 918 SYTGQSQLYAAQHQASSPTSSPATSF-------------PPPPSSGASFQHGGPG-APPS 963
S L A + PT P TS PPPPS S GP A S
Sbjct: 537 SPPASPTLQAPRRP---PTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHS 593
Query: 964 SSAYALPP-----------GTTGTLPAASELPASQRTGPQNGWNDPPALNRVP 1005
SSA + P G + P +EL A G P A P
Sbjct: 594 SSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAP 646
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 855
Score = 62.8 bits (151), Expect = 2e-09
Identities = 87/308 (28%), Positives = 110/308 (35%), Gaps = 52/308 (16%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAG--QLPTSPGHMHTQ 867
P RP P + PR H P P P+A G Q P S +
Sbjct: 194 PSARPRPPT---EGPRKSVSSASEHSTTEPSPA----ARRRPSAGGGLQRPASRSLSSSA 246
Query: 868 VP--------PYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYP------NTPYI 913
P P + P PA P G RP Q V PP +A P ++P
Sbjct: 247 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ-VTPPRKDAAPALGPLSSSPLA 305
Query: 914 SSASSYTGQSQ----LYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYAL 969
+ + S QSQ L A H +SS T AT P P S P APPS
Sbjct: 306 TPSPSAALQSQAPPTLPATPH-SSSLTCQLATPLPLAPPS--------PSAPPSLQTLPS 356
Query: 970 PPGTTGTLPAAS-ELPASQRT------GPQNGWNDPPALNRVPKKKKMPENFMPPVPITS 1022
PP T + S P Q T P + PP + P +P PP P S
Sbjct: 357 PPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPP--QAPPALALPPLQAPPSPPAS 414
Query: 1023 PIMNPLGDPQSQMLQQQPSAPVPLSSQSSF-PQPHLPGGQPFH-GVQQPLGQTGMPPSFS 1080
P ++PL P Q P+A Q+ F P P P PF P+ + PPS +
Sbjct: 415 PPLSPLATPS----PQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQA 470
Query: 1081 KPNIEGAP 1088
P++ P
Sbjct: 471 PPSLAAPP 478
Score = 57.8 bits (138), Expect = 6e-08
Identities = 76/298 (25%), Positives = 104/298 (34%), Gaps = 64/298 (21%)
Query: 858 PTSPGHMHTQVPPYPQPQPY------QPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTP 911
P+ + +Q PP P+ Q A P P P P APP+ P+ P
Sbjct: 307 PSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLA--------PPSPSAPPSLQTLPSPP 358
Query: 912 YI--SSASSYTGQSQLYAAQHQASSPTSSPATSFPP-------------PPSSGAS---- 952
S A++ G L A SP SP + PP PPS AS
Sbjct: 359 ATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLS 418
Query: 953 -FQHGGPGAPPSSSAYALP----PGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKK 1007
P AP + + + L P + + A PAS P PP+ + P
Sbjct: 419 PLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSA---TPPS--QAPPS 473
Query: 1008 KKMPENFMPPVPITSPIMN-----------PLGDPQSQMLQQQPSAPVPLSSQ--SSFPQ 1054
P +PP P SP M+ PL P Q+ + P AP L++ + P
Sbjct: 474 LAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPS 533
Query: 1055 P--HLPGGQPFH-GVQQPLGQTGMPPS-----FSKPNIEGAPGAPIGNTFQHVQSLPT 1104
P PG PF P+ PP + P ++ P P T Q + PT
Sbjct: 534 PPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPT 591
Score = 45.1 bits (105), Expect = 4e-04
Identities = 57/222 (25%), Positives = 74/222 (33%), Gaps = 34/222 (15%)
Query: 800 PKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGN--VNPNAA--G 855
P P P P P A + + + P P F + V+P+A
Sbjct: 409 PSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPS 468
Query: 856 QLPTSPGHMHTQVPPYPQPQPYQ-------PAQPYPFGTGGSAMYRPQQPVAPPTSNAYP 908
Q P S QVPP P P P P P + +P P APP P
Sbjct: 469 QAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPP-PQAPPALATPP 527
Query: 909 NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPP---------PPSSGASFQHGGPG 959
S +S+ GQ+ + SP ++P PP PPS AS P
Sbjct: 528 LQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR 587
Query: 960 APPSSS----------AYALPPGTTGTLPAASELPASQRTGP 991
PP+ AL PG P S P+S +GP
Sbjct: 588 RPPTPGPDTSVSGPRLTLALAPGPP---PPPSRSPSSTLSGP 626
Score = 33.1 bits (74), Expect = 1.7
Identities = 60/233 (25%), Positives = 70/233 (30%), Gaps = 46/233 (19%)
Query: 800 PKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPT 859
P + Q+P P P A P P PP + P A L T
Sbjct: 472 PSLAAPPLQVP---PSPPASPPMSPSATPPPQAPPPLAAPP---LQLAKPPPQAPPALAT 525
Query: 860 SPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYP--NTPYISSAS 917
P + P P P Q PF S P P+A P A P P +
Sbjct: 526 PP------LQALPSPPASFPGQA-PFSPSASL---PMSPLATPPPQAPPVLAAPLLQVPP 575
Query: 918 SYTGQSQLYAAQHQASSPTSSPATSF-------------PPPPSSGASFQHGGPG-APPS 963
S L A + PT P TS PPPPS S GP A S
Sbjct: 576 SPPASPTLQAPRRP---PTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHS 632
Query: 964 SSAYALPP-----------GTTGTLPAASELPASQRTGPQNGWNDPPALNRVP 1005
SSA + P G + P +EL A G P A P
Sbjct: 633 SSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAP 685
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 62.0 bits (149), Expect = 3e-09
Identities = 83/336 (24%), Positives = 108/336 (32%), Gaps = 62/336 (18%)
Query: 798 ESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQL 857
E+ P K++ GR HH ++Q Q P + PPPP Q
Sbjct: 718 ETEMAPKSKKKGHPGREQKKHHHHHHQQMQ-QAPAPVPQQPPPP------------PQQP 764
Query: 858 PTSPGHMHTQVPPYPQPQPYQPAQ--------PYPFGTGGSAMYRPQ------------- 896
P P Q PP P P P P Q P PF + PQ
Sbjct: 765 PPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQVPVLEPQLPGSVFDPIGHFT 824
Query: 897 -------QPVAPPTSNAYP--NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPP 947
QP PP P +TP + + L+ A Q S S+ A + PP P
Sbjct: 825 QPILHLPQPELPPHLPQPPEHSTPPHLNQHAVVSPPALHNALPQQPSRPSNRAAALPPKP 884
Query: 948 SSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKK 1007
+ P P+ + L P P L + P + +K
Sbjct: 885 ARP-------PAVSPALTQTPLLPQPPMAQPPQVLLEDEEPPAPPLTSMQMQLYLQQLQK 937
Query: 1008 KKMPENFMPPVPITSPIMNPLGDPQ----SQMLQQQPSAPVPLSSQSSFPQPHLPGGQPF 1063
+ P +P V + S PL P Q LQQQP P P Q Q H P +P
Sbjct: 938 VQPPTPLLPSVKVQSQPPPPLPPPPHPSVQQQLQQQPPPPPPPQPQPPPQQQHQPPPRPV 997
Query: 1064 H--------GVQQPLGQTGMPPSFSKPNIEGAPGAP 1091
H +QQP G P P + P P
Sbjct: 998 HLQPMQFSTHIQQPPPPQGQQPPHPPPGQQPPPPQP 1033
Score = 47.4 bits (111), Expect = 8e-05
Identities = 76/301 (25%), Positives = 102/301 (33%), Gaps = 57/301 (18%)
Query: 788 RAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ Q +P P P +QQL + P P Q P Q Q P + P F H
Sbjct: 949 KVQSQPPPPLPPPPHPSVQQQLQQQPPPPPPPQPQPPPQQQHQPPPRPVHLQPMQFSTHI 1008
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPY---------------PFGTG---- 888
P GQ P P PP QP P QPA+P P+ TG
Sbjct: 1009 QQPPPPQGQQPPHP-------PPGQQPPPPQPAKPQQVIQHHHSPRHHKSDPYSTGHLRE 1061
Query: 889 ---GSAMYRPQQP-------VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP--T 936
++ PQ +PP N P + +AS Q + + + SP
Sbjct: 1062 APSPLMIHSPQMSQFQSLTHQSPPQQNVQPKKQELRAASVVQPQPLVVVKEEKIHSPIIR 1121
Query: 937 SSP-ATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGW 995
S P + S P P P P S A P P P R QN
Sbjct: 1122 SEPFSPSLRPEP----------PKHPESIKAPVHLPQRPEMKPVDVGRPVI-RPPEQNA- 1169
Query: 996 NDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAP--VPLSSQSSFP 1053
PP K+K+ P+ P P + +G + ++Q+ P+ P SS SF
Sbjct: 1170 -PPPGAPDKDKQKQEPKT--PVAPKKDLKIKNMGS-WASLVQKHPTTPSSTAKSSSDSFE 1225
Query: 1054 Q 1054
Q
Sbjct: 1226 Q 1226
Score = 31.2 bits (69), Expect = 6.3
Identities = 39/148 (26%), Positives = 52/148 (35%), Gaps = 31/148 (20%)
Query: 824 PRVQTQQYYPHGENPPPPGFIMHG--NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQ 881
P+ QT Q NPPP H V P+ Q P T VPP QP Q
Sbjct: 206 PQTQTPQ-----PNPPPVQATPHPFPAVTPDLIVQTPVM-----TVVPP----QPLQTPP 251
Query: 882 PYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTS---- 937
P P +PQ P AP + P I++ + + ++PT+
Sbjct: 252 PVP--------PQPQPPPAPAPQPVQSHPPIIAATPQPVKTKKGVKRKADTTTPTTIDPI 303
Query: 938 SPATSFPPPPSS---GASFQHGGPGAPP 962
S PP P + G + P PP
Sbjct: 304 HEPPSLPPEPKTTKLGQRRESSRPVKPP 331
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 62.0 bits (149), Expect = 3e-09
Identities = 88/314 (28%), Positives = 106/314 (33%), Gaps = 33/314 (10%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNV 849
QG G P+ P P+G P P G+ P+ P G PPP G
Sbjct: 37 QGPSPQGGNKPQGPPPPPGKPQGPP-PQGGNK--PQGPPPPGKPQG--PPPQGDKSRSPR 91
Query: 850 NPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPN 909
+P Q P G Q PP P +P P P G P +P PP P
Sbjct: 92 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNRPQGPPPPGKPQGPP-----PQ 144
Query: 910 TPYISSASSYTGQSQLYAAQ--HQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAY 967
S S G+ Q Q +Q P P PPP G Q G PP
Sbjct: 145 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQ----GPPPPGKPQ 200
Query: 968 ALPPGTTGTLPAASELPASQRTG-PQNGWNDPPALNRVPKKKKMP-----ENFMPPVPIT 1021
PP G +S+ P + G P G N P P K + P P P
Sbjct: 201 GPPP--QGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 258
Query: 1022 SPIMNPL-GDPQSQMLQQQPSAPV-PLSSQSSFPQ--PHLPGGQPFHGVQQPLGQTGMPP 1077
P P G +SQ + P P P + + PQ P GG P P GQ PP
Sbjct: 259 KPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPP 318
Query: 1078 SFSKPNIEGAPGAP 1091
+P G P P
Sbjct: 319 ---RPPQGGRPSRP 329
Score = 54.3 bits (129), Expect = 7e-07
Identities = 76/272 (27%), Positives = 89/272 (32%), Gaps = 35/272 (12%)
Query: 850 NPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPN 909
+P+ P P P P P P +P P P GG+ P P P P
Sbjct: 28 SPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPP--QGGNKPQGPPPPGKP--QGPPPQ 83
Query: 910 TPYISSASSYTGQSQLYAAQ--HQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAY 967
S S G+ Q Q +Q P P PPP G Q G PP
Sbjct: 84 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQ----GPPPPGKPQ 139
Query: 968 ALPP-GTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKK--------KMPENFMPPV 1018
PP G P + P + P G N P P K K P+ PP
Sbjct: 140 GPPPQGDKSRSPRSP--PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPG 197
Query: 1019 PITSPIMNPLGDP--QSQMLQQQPSAPVPLSS---QSSFPQPHLPGGQPFHGVQQPLGQT 1073
P P GD SQ +P P P Q P P P G P G +P G
Sbjct: 198 KPQGP--PPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG-- 253
Query: 1074 GMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTK 1105
PP KP P A G+ Q +S P K
Sbjct: 254 --PPPPGKPQ---GPPAQGGSKSQSARSPPGK 280
Score = 50.1 bits (118), Expect = 1e-05
Identities = 50/184 (27%), Positives = 63/184 (34%), Gaps = 10/184 (5%)
Query: 788 RAQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG 847
+ QG P G P+ P P+G P P G + P+ P G PPP G
Sbjct: 157 KPQGPPPQGGNQPQGPPPPPGKPQGPP-PQGG--KKPQGPPPPGKPQG--PPPQGDKSRS 211
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY 907
+ +P Q P G Q PP P +P P P G P +P PP
Sbjct: 212 SQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PPQGGNKPQGPPPPGKPQGPPAQGGS 269
Query: 908 PNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAY 967
+ S G Q Q P PA P P + + Q GP PP
Sbjct: 270 KSQSARSPPGKPQGPPQQEGNNPQGPPP---PAGGNPQQPQAPPAGQPQGPPRPPQGGRP 326
Query: 968 ALPP 971
+ PP
Sbjct: 327 SRPP 330
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 61.6 bits (148), Expect = 4e-09
Identities = 73/288 (25%), Positives = 106/288 (36%), Gaps = 23/288 (7%)
Query: 850 NPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQP-----YPFGTGGSAMYRPQQPVAPPTS 904
+P + PTSP + T P Y P P P + S Y P P PTS
Sbjct: 1679 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1738
Query: 905 NAY-PNTP-YISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPS-SGASFQHGGPGAP 961
+Y P +P Y ++ +YT S Y+ + SPTS T P S + S+ P
Sbjct: 1739 PSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYS 1798
Query: 962 PSSSAYA------LPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFM 1015
P+S +Y+ P T T + S P+S P + P + + P +
Sbjct: 1799 PTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPT-S 1857
Query: 1016 PPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGM 1075
P TSP +P S S S P P P P T
Sbjct: 1858 PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYS 1917
Query: 1076 P--PSFSKPNIEGAPGAPIGNTFQ-----HVQSLPTKKITKKPI-PDE 1115
P P +S + +P +P G+T+ + + PT +T I PD+
Sbjct: 1918 PTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDD 1965
Score = 60.5 bits (145), Expect = 1e-08
Identities = 65/225 (28%), Positives = 84/225 (37%), Gaps = 32/225 (14%)
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAY 907
N +P + PTSP + T P Y P P Y P P PTS +Y
Sbjct: 1747 NYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP---------NYSPTSPSYSPTSPSY 1797
Query: 908 -PNTP-YISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSS 965
P +P Y S+ YT QS Y SSP+ SP S S+ P P+S
Sbjct: 1798 SPTSPSYSPSSPRYTPQSPTYT----PSSPSYSP---------SSPSYSPTSPKYTPTSP 1844
Query: 966 AYA-LPPGTTGTLPAASEL-PASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI--- 1020
+Y+ P T T P S P T P+ P PK + P P+
Sbjct: 1845 SYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTP 1904
Query: 1021 TSPIMNPLGDPQSQML-QQQPSAPV--PLSSQSSFPQPHLPGGQP 1062
TSP +P S + P++P P S + S P PG P
Sbjct: 1905 TSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 1949
Score = 53.1 bits (126), Expect = 2e-06
Identities = 54/199 (27%), Positives = 74/199 (37%), Gaps = 29/199 (14%)
Query: 848 NVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQP-----YPFGTGGSAMYRPQQPVAPP 902
N P + PTSP + T P Y P+ P P T S Y P P P
Sbjct: 1775 NYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSP 1834
Query: 903 TSNAY-PNTP-YISSASSYTGQSQLY----------AAQHQASSPTSSPATSFPPPPSSG 950
TS Y P +P Y S+ YT S Y + ++ +SPT SP T P +
Sbjct: 1835 TSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTT--PKYSPTS 1892
Query: 951 ASFQHGGPGAPPSSSAYA-LPPGTTGTLPAASEL-PASQRTGPQNGWNDPPALNRVPKKK 1008
++ P P+S Y+ P + T P S P T P+ P + P
Sbjct: 1893 PTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTS- 1951
Query: 1009 KMPENFMPPVPITSPIMNP 1027
P +TSP ++P
Sbjct: 1952 -------PTYSLTSPAISP 1963
Score = 38.5 bits (88), Expect = 0.039
Identities = 64/273 (23%), Positives = 89/273 (32%), Gaps = 28/273 (10%)
Query: 834 HGENPPPPGF---IMHGNVNPNAAGQLPTSPG--------HMHTQVPPYPQPQP---YQP 879
HGE+ P G IM G + P G + T +P P +
Sbjct: 1445 HGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFG 1504
Query: 880 AQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSP 939
+ P P G G S P A P A+ + G S A+ SP SP
Sbjct: 1505 SAPSPMG-GISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSP 1563
Query: 940 ATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPP 999
A S P G PG+P SS Y PG + + PA + P P
Sbjct: 1564 AWSPTP----------GSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSP 1613
Query: 1000 ALNRV-PKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLP 1058
+ + P ++ P P SP +P P S + P S S P
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPNYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1672
Query: 1059 GGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAP 1091
P + P + PS+S + +P +P
Sbjct: 1673 PTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSP 1704
>gi|58331266 WD repeat domain 59 [Homo sapiens]
Length = 974
Score = 61.2 bits (147), Expect = 6e-09
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 10/137 (7%)
Query: 121 HTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQV 180
HT + LD +F+ +L+ + + ++ IYIWD+ + P S + WN++
Sbjct: 104 HTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKD---TRKPTVALSAVAGASQVKWNKKN 160
Query: 181 QHILASASPSGRATVWDLRKNEPIIK-VSDHSNRMHCSGLAWHPDVATQMVLASEDDRLP 239
+ LA+ S G +WD RK ++ ++ H +++H GL WHPD + +S+D+
Sbjct: 161 ANCLAT-SHDGDVRIWDKRKPSTAVEYLAAHLSKIH--GLDWHPDSEHILATSSQDNS-- 215
Query: 240 VIQMWDLRFASSPLRVL 256
++ WD R L +L
Sbjct: 216 -VKFWDYRQPRKYLNIL 231
Score = 30.8 bits (68), Expect = 8.2
Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 11/154 (7%)
Query: 133 FQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGR 192
F AS ++Y W + T T+ D+ W +L ++S
Sbjct: 73 FAHYFAASSNQRVDLYKWKDGSGEVGTTLQGHTRVISDLD---WAVFEPDLLVTSSVDTY 129
Query: 193 ATVWDLRKN-EPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASS 251
+WD++ +P + +S + S + W+ A + + + D +++WD R S+
Sbjct: 130 IYIWDIKDTRKPTVALSAVAG---ASQVKWNKKNANCLATSHDGD----VRIWDKRKPST 182
Query: 252 PLRVLENHARGILAIAWSMADPELLLSCGKDAKI 285
+ L H I + W +L + +D +
Sbjct: 183 AVEYLAAHLSKIHGLDWHPDSEHILATSSQDNSV 216
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 60.5 bits (145), Expect = 1e-08
Identities = 93/374 (24%), Positives = 130/374 (34%), Gaps = 86/374 (22%)
Query: 802 IPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHG----------NVNP 851
+P E+ Q P GP H +P P ++P P + G +P
Sbjct: 700 LPQERSQQPLSAEGP---HLSVPASVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASP 756
Query: 852 NAAGQLPTS-----PGHMHTQVPPYPQP---QPYQPAQPYPFGTGGSAMYRPQQPVAPPT 903
A Q+P + PG + P+ P P+ P+ P+P RPQ PP+
Sbjct: 757 APAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPS-PHPTRPPSRPPSRPQSVSRPPS 815
Query: 904 SNAYPNTPYISSASSYTGQSQLYAAQHQAS--SPTSSPATSFPPPPSSGASFQH------ 955
P + + G ++ Q+Q P S+PA + P PP Q
Sbjct: 816 EPPLHPCPPPQAPPTLPG---IFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQSQPPEGP 872
Query: 956 --GGPGAPPS--SSAYALPPGTTGTLPAAS------ELPASQRTGPQNGWNDPPALNRVP 1005
P PPS SSA A T+ LPA + + P SQ GP PP L+ VP
Sbjct: 873 LPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQ--GPHKSPTPPPTLHLVP 930
Query: 1006 KKKKMPENFMPPVP-----ITSP----------------------IMNPLGD----PQSQ 1034
+ P PP P +T+P + N G PQ+
Sbjct: 931 EPAAPP----PPPPRTFQMVTTPFPALPQPKALLERFHQVPSGIILQNKAGGAPAAPQTS 986
Query: 1035 ML---QQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAP 1091
P+A V +S Q+ P P P P+ TG+PP N A P
Sbjct: 987 TSLGPLTSPAASVLVSGQAPSGTPTAPSHAP---APAPMAATGLPPLLPAENKAFASNLP 1043
Query: 1092 IGNTFQHVQSLPTK 1105
N + S P K
Sbjct: 1044 TLNVAKAASSGPGK 1057
Score = 42.0 bits (97), Expect = 0.004
Identities = 56/217 (25%), Positives = 81/217 (37%), Gaps = 49/217 (22%)
Query: 912 YISSASSY----TGQSQLYAAQHQASSPTSSPATSFPPPPSSGASF--QHGGPGAPPS-- 963
Y+SS+ S S+ + +S+P S PPP +HGG G PS
Sbjct: 1201 YVSSSRSLGLPIAASSEGHRLPGHGPLSSSAPGASTQPPPHLPTKLVIRHGGAGGSPSVT 1260
Query: 964 -SSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPP-----ALNRVPKKKKM------- 1010
+ A + ++ + AAS L A + GP N PP A +R+ K K+
Sbjct: 1261 WARASSSLSSSSSSSSAASSLDADE-DGPMPSRNRPPIKTYEARSRIGLKLKIKQEAGLS 1319
Query: 1011 ---------PENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQ 1061
P + PP P T + P +P P P + Q + H P
Sbjct: 1320 KVVHNTALDPVHQPPPPPATLKVAEP---------PPRPPPPPPPTGQMNGTVDHPPPAA 1370
Query: 1062 PFHGVQQPLGQTGMPPSFS-----KPNIEGAPGAPIG 1093
P ++PLG P + N+ G PGAP G
Sbjct: 1371 P---ERKPLGTAPHCPRLPLRKTYRENV-GGPGAPEG 1403
Score = 41.6 bits (96), Expect = 0.005
Identities = 70/305 (22%), Positives = 96/305 (31%), Gaps = 58/305 (19%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGP--VAGHHQMPRVQTQQYYPH-----GENPP-PP 841
QGEP A + PK P + G+ G V P +Q + G PP PP
Sbjct: 381 QGEPGALPQQPKAPQNLTFMAAGKAGQNVVLSGFPAPALQANVFKQPPATTTGAAPPQPP 440
Query: 842 GFIMHGN----VNPNAAGQLPTS---PGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYR 894
G + +N ++ +P PG +P P Q Q P GG +
Sbjct: 441 GALSKPMSVHLLNQGSSIVIPAQHMLPGQNQFLLPGAPAVQLPQQLSALPANVGGQILAA 500
Query: 895 PQQ------------------------PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQH 930
PV P S A+ + +S+A GQ L+ Q
Sbjct: 501 AAPHTGGQLIANPILTNQNLAGPLSLGPVLAPHSGAH-SAHILSAAPIQVGQPALF--QM 557
Query: 931 QASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTG 990
S S T P P+ GP A LPP L L
Sbjct: 558 PVSLAAGSLPTQSQPAPA--------GPAATTVLQGVTLPPSAVAMLNTPDGLVQPATPA 609
Query: 991 PQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQS 1050
G P P PP +++P+ L PQ+Q Q P+ Q+
Sbjct: 610 AATG-------EAAPVLTVQPAPQAPPA-VSTPLPLGLQQPQAQQPPQAPTPQAAAPPQA 661
Query: 1051 SFPQP 1055
+ PQP
Sbjct: 662 TTPQP 666
Score = 35.0 bits (79), Expect = 0.44
Identities = 63/257 (24%), Positives = 85/257 (33%), Gaps = 57/257 (22%)
Query: 879 PAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTP----YISSASSYTGQSQ---------- 924
P Q P G +A Q PP++ A NTP ++ ++ TG++
Sbjct: 567 PTQSQPAPAGPAATTVLQGVTLPPSAVAMLNTPDGLVQPATPAAATGEAAPVLTVQPAPQ 626
Query: 925 ----------LYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTT 974
L Q QA P +P PP + G + P PP T
Sbjct: 627 APPAVSTPLPLGLQQPQAQQPPQAPTPQAAAPPQATTPQPSPGLASSPEKIVLGQPPSAT 686
Query: 975 GTLPAASE-----LPASQRTGPQNGWNDPPALNRVPKK--KKMPENFMPPVPITSPIMNP 1027
T + LP + P + + P L+ VP P P P T P+
Sbjct: 687 PTAILTQDSLQMFLPQERSQQPLSA--EGPHLS-VPASVIVSAPPPAQDPAPAT-PVAKG 742
Query: 1028 LG-DPQSQMLQQQPS------APVPL-----SSQSSFP-------QPHLPGGQPFHGVQQ 1068
G PQ+ Q P+ A PL SS S P PHLP P +
Sbjct: 743 AGLGPQAPDSQASPAPAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHP---TRP 799
Query: 1069 PLGQTGMPPSFSKPNIE 1085
P P S S+P E
Sbjct: 800 PSRPPSRPQSVSRPPSE 816
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 60.1 bits (144), Expect = 1e-08
Identities = 76/298 (25%), Positives = 108/298 (36%), Gaps = 65/298 (21%)
Query: 793 PVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQ----QYYPHGENPPPPGFIMHGN 848
P+ ++P + + Q G P G+ PR+Q Q+ P + P + +
Sbjct: 724 PIVPRQTPPLQHHGQLAQPGALNPPMGYG--PRMQQPSNQGQFLPQTQFPSQGMNVTNIP 781
Query: 849 VNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYP 908
+ P++ GQ P S M + P P P G+ GS ++ PQ P
Sbjct: 782 LAPSS-GQAPVSQAQMSSSSCPVNSPI-------MPPGSQGSHIHCPQLP---------- 823
Query: 909 NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYA 968
A HQ S SP S P P PPS A
Sbjct: 824 -----------------QPALHQNSP---SPVPSRTPTPHH----------TPPSIGAQQ 853
Query: 969 LPPGTTGTLPAASELPASQRTGPQN-GWNDPPALNRVPKKKKMPENFMPPVPITSPIMNP 1027
PP TT +PA P + GPQ+ + PP P ++P+ P +P P
Sbjct: 854 -PPATT--IPAPVPTPPAMPPGPQSQALHPPPRQTPTPPTTQLPQQVQPSLPAAPSADQP 910
Query: 1028 LGDPQSQMLQQQPSAPVPLSSQSSF-PQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNI 1084
P+S QQ +A VP + PQP P QP ++ GQ PPS S +
Sbjct: 911 QQQPRS---QQSTAASVPTPTAPLLPPQPATPLSQPAVSIE---GQVSNPPSTSSTEV 962
Score = 43.5 bits (101), Expect = 0.001
Identities = 72/281 (25%), Positives = 102/281 (36%), Gaps = 67/281 (23%)
Query: 848 NVNPNAAGQLPTS--PGHMHTQVPPY-----PQPQPYQ-----PAQPYPFGTGGSA---- 891
N+ PNAAG +P S PG Q P P P P P Q P T S
Sbjct: 656 NMLPNAAGMVPVSMNPGPNMGQPQPGMTSNGPLPDPSMIRGSVPNQMMPRITPQSGLNQF 715
Query: 892 --MYRPQQPVAPPTSNAYPNTPYISSASS------YTGQSQLYAAQHQASSPTSSPA--- 940
M Q P+ P + + ++ + Y + Q + Q Q T P+
Sbjct: 716 GQMSMAQPPIVPRQTPPLQHHGQLAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGM 775
Query: 941 --TSFPPPPSSG----ASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNG 994
T+ P PSSG + Q P +S +PPG+ G+ +LP
Sbjct: 776 NVTNIPLAPSSGQAPVSQAQMSSSSCPVNSPI--MPPGSQGSHIHCPQLPQ--------- 824
Query: 995 WNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQ 1054
PAL+ +N PVP +P P P S QQ P+ +P +
Sbjct: 825 ----PALH---------QNSPSPVPSRTP--TPHHTPPSIGAQQPPATTIPAPVPT---P 866
Query: 1055 PHLPGGQPFHGVQQPLGQTGMPPSFS-----KPNIEGAPGA 1090
P +P G + P QT PP+ +P++ AP A
Sbjct: 867 PAMPPGPQSQALHPPPRQTPTPPTTQLPQQVQPSLPAAPSA 907
Score = 39.7 bits (91), Expect = 0.018
Identities = 80/358 (22%), Positives = 111/358 (31%), Gaps = 58/358 (16%)
Query: 781 QLRDRLCRAQ--GEPVAGHESPKIPYEKQQLPKGRPG---------PVAGHHQMPRVQTQ 829
QL+ RL +AQ +A + + ++Q LP P P P Q Q
Sbjct: 1817 QLQHRLQQAQMLRRRMASMQRTGVVGQQQGLPSPTPATPTTPTGQQPTTPQTPQPTSQPQ 1876
Query: 830 QYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQP------------- 876
P+ P P G V+ A T P T PP P P P
Sbjct: 1877 PTPPNSMPPYLPRTQAAGPVSQGKAAGQVTPPTPPQTAQPPLPGPPPAAVEMAMQIQRAA 1936
Query: 877 ---YQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNT----PYISSASSYTGQSQLYAAQ 929
Q A F P P+AP N P T ++ TG Q
Sbjct: 1937 ETQRQMAHVQIFQRPIQHQMPPMTPMAPMGMNPPPMTRGPSGHLEPGMGPTGMQQ-QPPW 1995
Query: 930 HQASSPTSSPATSFPPPPSSGASFQHGGP---GAPPSSSAYALPPGTTGTL--PAASELP 984
Q P S P P+ + QHG P P + P GT+ A L
Sbjct: 1996 SQGGLPQPQQLQSGMPRPAMMSVAQHGQPLNMAPQPGLGQVGISPLKPGTVSQQALQNLL 2055
Query: 985 ASQRTGPQNGWNDPPALN------------------RVPKKKKMPENFMPPVPITSPIMN 1026
+ R+ P + L+ + P P +P P +
Sbjct: 2056 RTLRS-PSSPLQQQQVLSILHANPQLLAAFIKQRAAKYANSNPQPIPGQPGMPQGQPGLQ 2114
Query: 1027 PLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNI 1084
P P Q + P+ Q+ + LP QP +Q P+G GM P + N+
Sbjct: 2115 PPTMPGQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPMG--GMSPQAQQMNM 2170
>gi|207029439 retinoblastoma binding protein 4 isoform c [Homo
sapiens]
Length = 390
Score = 58.9 bits (141), Expect = 3e-08
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 77 YKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQN--DKHTGPVRALDVNIFQ 134
Y + ++SG L++ ++ I L+D S + K VV A+ HT V + ++
Sbjct: 146 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK-VVDAKTIFTGHTAVVEDVSWHLLH 204
Query: 135 TNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRAT 194
+L S A++ ++ IWD + T + +++C+++N + ILA+ S
Sbjct: 205 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 264
Query: 195 VWDLRKNEPIIKVSDHSNRMHCSGL---AWHPDVATQMVLASEDDRLPVIQMWDLRFASS 251
+WDLR +K+ HS H + W P T + + D RL V + + S
Sbjct: 265 LWDLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 320
Query: 252 P----------LRVLENHARGILAIAWSMADPELLLSCGKD 282
P L + H I +W+ +P ++ S +D
Sbjct: 321 PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 361
Score = 52.8 bits (125), Expect = 2e-06
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 140 SGANESEIYIWDLNNFATPM---TPGAKT------QPPEDISCIAWNRQVQHILASASPS 190
S +++ I +WD++ A P AKT ED+S W+ + + S +
Sbjct: 160 SASDDHTICLWDIS--AVPKEGKVVDAKTIFTGHTAVVEDVS---WHLLHESLFGSVADD 214
Query: 191 GRATVWDLRKN---EPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLR 247
+ +WD R N +P V H+ ++C L+++P + S D + +WDLR
Sbjct: 215 QKLMIWDTRSNNTSKPSHSVDAHTAEVNC--LSFNPYSEFILATGSADK---TVALWDLR 269
Query: 248 FASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILC--------------SNPNTG 293
L E+H I + WS + +L S G D ++ +
Sbjct: 270 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP 329
Query: 294 EVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSF 353
E+L+ +T D W P P V+ + S D + V+ + + +
Sbjct: 330 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM---------AENIYNDEDPE 380
Query: 354 GNLDPFGTG 362
G++DP G G
Sbjct: 381 GSVDPEGQG 389
>gi|207029415 retinoblastoma binding protein 4 isoform b [Homo
sapiens]
Length = 424
Score = 58.9 bits (141), Expect = 3e-08
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 77 YKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQN--DKHTGPVRALDVNIFQ 134
Y + ++SG L++ ++ I L+D S + K VV A+ HT V + ++
Sbjct: 180 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK-VVDAKTIFTGHTAVVEDVSWHLLH 238
Query: 135 TNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRAT 194
+L S A++ ++ IWD + T + +++C+++N + ILA+ S
Sbjct: 239 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 298
Query: 195 VWDLRKNEPIIKVSDHSNRMHCSGL---AWHPDVATQMVLASEDDRLPVIQMWDLRFASS 251
+WDLR +K+ HS H + W P T + + D RL V + + S
Sbjct: 299 LWDLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 354
Query: 252 P----------LRVLENHARGILAIAWSMADPELLLSCGKD 282
P L + H I +W+ +P ++ S +D
Sbjct: 355 PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 395
Score = 52.8 bits (125), Expect = 2e-06
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 140 SGANESEIYIWDLNNFATPM---TPGAKT------QPPEDISCIAWNRQVQHILASASPS 190
S +++ I +WD++ A P AKT ED+S W+ + + S +
Sbjct: 194 SASDDHTICLWDIS--AVPKEGKVVDAKTIFTGHTAVVEDVS---WHLLHESLFGSVADD 248
Query: 191 GRATVWDLRKN---EPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLR 247
+ +WD R N +P V H+ ++C L+++P + S D + +WDLR
Sbjct: 249 QKLMIWDTRSNNTSKPSHSVDAHTAEVNC--LSFNPYSEFILATGSADK---TVALWDLR 303
Query: 248 FASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILC--------------SNPNTG 293
L E+H I + WS + +L S G D ++ +
Sbjct: 304 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP 363
Query: 294 EVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSF 353
E+L+ +T D W P P V+ + S D + V+ + + +
Sbjct: 364 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM---------AENIYNDEDPE 414
Query: 354 GNLDPFGTG 362
G++DP G G
Sbjct: 415 GSVDPEGQG 423
>gi|5032027 retinoblastoma binding protein 4 isoform a [Homo
sapiens]
Length = 425
Score = 58.9 bits (141), Expect = 3e-08
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 20/221 (9%)
Query: 77 YKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGDKEVVIAQN--DKHTGPVRALDVNIFQ 134
Y + ++SG L++ ++ I L+D S + K VV A+ HT V + ++
Sbjct: 181 YGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK-VVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 135 TNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRAT 194
+L S A++ ++ IWD + T + +++C+++N + ILA+ S
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 195 VWDLRKNEPIIKVSDHSNRMHCSGL---AWHPDVATQMVLASEDDRLPVIQMWDLRFASS 251
+WDLR +K+ HS H + W P T + + D RL V + + S
Sbjct: 300 LWDLRN----LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQS 355
Query: 252 P----------LRVLENHARGILAIAWSMADPELLLSCGKD 282
P L + H I +W+ +P ++ S +D
Sbjct: 356 PEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSED 396
Score = 52.8 bits (125), Expect = 2e-06
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 140 SGANESEIYIWDLNNFATPM---TPGAKT------QPPEDISCIAWNRQVQHILASASPS 190
S +++ I +WD++ A P AKT ED+S W+ + + S +
Sbjct: 195 SASDDHTICLWDIS--AVPKEGKVVDAKTIFTGHTAVVEDVS---WHLLHESLFGSVADD 249
Query: 191 GRATVWDLRKN---EPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLR 247
+ +WD R N +P V H+ ++C L+++P + S D + +WDLR
Sbjct: 250 QKLMIWDTRSNNTSKPSHSVDAHTAEVNC--LSFNPYSEFILATGSADK---TVALWDLR 304
Query: 248 FASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILC--------------SNPNTG 293
L E+H I + WS + +L S G D ++ +
Sbjct: 305 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPP 364
Query: 294 EVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSF 353
E+L+ +T D W P P V+ + S D + V+ + + +
Sbjct: 365 ELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM---------AENIYNDEDPE 415
Query: 354 GNLDPFGTG 362
G++DP G G
Sbjct: 416 GSVDPEGQG 424
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 58.9 bits (141), Expect = 3e-08
Identities = 79/318 (24%), Positives = 109/318 (34%), Gaps = 72/318 (22%)
Query: 793 PVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNP- 851
P G SP P K + P P + Q+ Q Q G + G P
Sbjct: 569 PSPGDGSP--PKPKDPVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMG-------QPH 619
Query: 852 NAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGG-----SAMYRPQQPVAPPTSNA 906
NAAG P H + P P P +P P P GG ++ + P PPT +
Sbjct: 620 NAAGPSP----HTLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSP 675
Query: 907 YPNTPYISSASSY-TGQSQLYAAQHQAS--SPTSSPATSFPPPPSSGASFQHGGPGAPPS 963
P T + + SQL A + +S SP +P P PP+ H P +
Sbjct: 676 SPPTQHTGQPPGQPSAPSQLSAPRRYSSSLSPIQAPNHPPPQPPTQATPLMHTKPNSQGP 735
Query: 964 SSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSP 1023
+ ALP ++G P + PP T P
Sbjct: 736 PNPMALP--------------------SEHGLEQP--------------SHTPPQTPTPP 761
Query: 1024 IMNPLGDPQSQMLQQQPSAPVPLSSQSSFP---QPH---LPGGQPFHGVQQPLGQTGMPP 1077
PLG +Q PS P P + P QPH LP +P V +P + +PP
Sbjct: 762 STPPLG-------KQNPSLPAPQTLAGGNPETAQPHAGTLPRPRP---VPKPRNRPSVPP 811
Query: 1078 SFSKPNIEGAPGAPIGNT 1095
P + A + + NT
Sbjct: 812 PPQPPGVHSAGDSSLTNT 829
Score = 54.7 bits (130), Expect = 5e-07
Identities = 55/179 (30%), Positives = 71/179 (39%), Gaps = 24/179 (13%)
Query: 938 SPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWND 997
SPA P PP+ G++ GP PP SS G GT+P+++ + GP G
Sbjct: 520 SPAFQPPLPPTDGSTVVPAGPEPPPQSSRAESSSG-GGTVPSSAGI---LEQGPSPGDGS 575
Query: 998 PPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQML--QQQPSAPVPLSSQSSFPQP 1055
PP K K P + P P G SQ+ Q QP A S Q S QP
Sbjct: 576 PP-------KPKDPVSAAVPAP---------GRNNSQIASGQNQPQAAAG-SHQLSMGQP 618
Query: 1056 HLPGGQPFHGVQQPLGQTG-MPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIP 1113
H G H +++ + + PP P G T QH SL K T+ P P
Sbjct: 619 HNAAGPSPHTLRRAVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSP 677
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 58.9 bits (141), Expect = 3e-08
Identities = 74/297 (24%), Positives = 103/297 (34%), Gaps = 39/297 (13%)
Query: 827 QTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFG 886
Q Q + PPPP G ++ LP PG P P QP+QP G
Sbjct: 265 QPQSFSVGQPQPPPPPV---GGAVAQSSAPLPPFPG---AATGPQPMMAAAQPSQPQGAG 318
Query: 887 TGGSAMYRPQQPVAPPTSNAYPNT-PYISSASSYTGQSQLYAAQHQASSPTSSPATSFPP 945
GG + +A P + P P + + ++ Q Y P P P
Sbjct: 319 PGGQTLPPTNVTLAQPAMSLPPQPGPAVGAPAAQQPQQFAYP------QPQIPPGHLLPV 372
Query: 946 PPSSGASF--QHGG---PGAP--PSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDP 998
PS + + QH P +P PSS+ A P T TLP + AS G +
Sbjct: 373 QPSGQSEYLQQHVAGLQPPSPAQPSSTGAAASPATAATLPVGTGQNASSVGAQLMGASSQ 432
Query: 999 PALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQM--LQQQPSAPVPLSSQSSFPQPH 1056
P+ P+ + P P G P + + + Q P S P P
Sbjct: 433 PSEAMAPRTGPAQGGQVAP-------CQPTGVPPATVGGVVQPCLGPAGAGQPQSVPPPQ 485
Query: 1057 LPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGNTFQHVQSLPTKKITKKPIP 1113
+ G P V P G + P PN+ A AP V S+ T +T +P
Sbjct: 486 MGGSGPLSAV--PGGPHAVVPGV--PNVPAAVPAP------SVPSVSTTSVTMPNVP 532
Score = 33.5 bits (75), Expect = 1.3
Identities = 59/218 (27%), Positives = 81/218 (37%), Gaps = 27/218 (12%)
Query: 747 AAKMSQYANLLAAQGSIAAAL-AFLPDNTNQPNIMQLRDRLCRAQGEPVAGHESPKIPYE 805
AA + A L G A+++ A L ++QP+ + R AQG VA P +
Sbjct: 402 AASPATAATLPVGTGQNASSVGAQLMGASSQPS-EAMAPRTGPAQGGQVA-------PCQ 453
Query: 806 KQQLPKGRPGPV---------AGHHQ-MPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAG 855
+P G V AG Q +P Q P P P ++ G N AA
Sbjct: 454 PTGVPPATVGGVVQPCLGPAGAGQPQSVPPPQMGGSGPLSAVPGGPHAVVPGVPNVPAAV 513
Query: 856 QLPTSPGHMHTQVP----PYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTP 911
P+ P T V P P Q Q + P S + P+AP T +A + P
Sbjct: 514 PAPSVPSVSTTSVTMPNVPAPLAQSQQLSSHTPVSRSSSIIQHVGLPLAPGTHSAPTSLP 573
Query: 912 YISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSS 949
S S + Q+Q Q + S P P PP S
Sbjct: 574 Q-SDLSQFQTQTQPLVGQVDDTRRKSEP---LPQPPLS 607
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 58.5 bits (140), Expect = 4e-08
Identities = 71/298 (23%), Positives = 99/298 (33%), Gaps = 53/298 (17%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAG--QLPTSPGHMHTQ 867
P RP P + PR H P P P+A G Q P S +
Sbjct: 194 PSARPRPPT---EGPRKSVSSASEHSTTEPSPA----ARRRPSAGGGLQRPASRSLSSSA 246
Query: 868 VP--------PYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSY 919
P P + P PA P G RP Q V PP +A P +SS+
Sbjct: 247 TPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ-VTPPRKDAAPALGPLSSSPLA 305
Query: 920 TGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPA 979
T SP+ + A PPP ++ P +PP ++ L P + P+
Sbjct: 306 T------------PSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPS 353
Query: 980 ASELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNP-LGDPQSQMLQQ 1038
LP+ T P PP++ P + +PP+ + + +P L P S +
Sbjct: 354 LQTLPSPPATPPSQA---PPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALS 410
Query: 1039 QPSAPVPLSS-----------------QSSFPQPHLPGGQPFHG--VQQPLGQTGMPP 1077
A L S Q+S P P P +Q PL PP
Sbjct: 411 SLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLPASPP 468
Score = 56.6 bits (135), Expect = 1e-07
Identities = 85/313 (27%), Positives = 108/313 (34%), Gaps = 49/313 (15%)
Query: 833 PHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHT---QVPP---------YPQPQPYQPA 880
PH E PP P P +P + T Q PP P P A
Sbjct: 556 PHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLA 615
Query: 881 QPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPA 940
P P A+ Q P +PP S P +P + + ++ Q S P S P
Sbjct: 616 TPPPQAPPXLALPPLQAPPSPPASP--PLSPLATPSPQAPNALAVHLLQAPFSPPPSPPV 673
Query: 941 TS-FPPPPSSGASFQHGGPG-APPSSSAYAL-----PPGTTGTLPAAS---ELPASQRTG 990
+ F PP S S P APPS +A L PP + P+A+ + P
Sbjct: 674 QAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP 733
Query: 991 PQNGWNDPPAL----------NRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQM----- 1035
P PPA RVP P +PP P S M+PL P Q
Sbjct: 734 PLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALA 793
Query: 1036 ---LQQQPSAPVPLSSQSSF-PQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAP 1091
LQ PS P Q+ F P L P + P Q PP + P ++ P P
Sbjct: 794 TPPLQALPSPPASFPGQAPFSPSASL----PMSPLATPPPQA--PPVLAAPLLQVPPSPP 847
Query: 1092 IGNTFQHVQSLPT 1104
T Q + PT
Sbjct: 848 ASPTLQAPRRPPT 860
Score = 47.4 bits (111), Expect = 8e-05
Identities = 57/202 (28%), Positives = 76/202 (37%), Gaps = 31/202 (15%)
Query: 896 QQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSP----ATSFP---PPPS 948
Q P A T+ N P ++ T + L H + P +P A P PPP
Sbjct: 524 QTPPASLTTPPLENLPSLAPPPLQTASAPL-TTPHLETPPCPAPCPLQAPPSPLTTPPPE 582
Query: 949 SGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKK 1008
+ +S P APP A A PP L P S P PP + P
Sbjct: 583 TPSSIATPPPQAPP---ALASPP-----LQGLPSPPLSPLATP------PP---QAPPXL 625
Query: 1009 KMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSF-PQPHLPGGQPFH-GV 1066
+P PP P SP ++PL P Q P+A Q+ F P P P PF
Sbjct: 626 ALPPLQAPPSPPASPPLSPLATPS----PQAPNALAVHLLQAPFSPPPSPPVQAPFSPPA 681
Query: 1067 QQPLGQTGMPPSFSKPNIEGAP 1088
P+ + PPS + P++ P
Sbjct: 682 SPPVSPSATPPSQAPPSLAAPP 703
Score = 43.5 bits (101), Expect = 0.001
Identities = 48/173 (27%), Positives = 61/173 (35%), Gaps = 24/173 (13%)
Query: 839 PPPGFIMHGNVNPNAAGQLPTSPGHMHT-QVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQ 897
PPP V P+ P SP +VPP P Q P S + +P
Sbjct: 727 PPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPP- 785
Query: 898 PVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPP---------PPS 948
P APP P S +S+ GQ+ + SP ++P PP PPS
Sbjct: 786 PQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPS 845
Query: 949 SGASFQHGGPGAPPSSS----------AYALPPGTTGTLPAASELPASQRTGP 991
AS P PP+ AL PG P S P+S +GP
Sbjct: 846 PPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPP---PPPSRSPSSTLSGP 895
Score = 36.6 bits (83), Expect = 0.15
Identities = 52/190 (27%), Positives = 60/190 (31%), Gaps = 36/190 (18%)
Query: 849 VNPNAAGQLPTSP-GHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQ-----QPVAPP 902
V P+ LP SP Q PP P Q P G A + P P+A P
Sbjct: 768 VPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATP 827
Query: 903 TSNAYP--NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSF-------------PPPP 947
A P P + S L A + PT P TS PPPP
Sbjct: 828 PPQAPPVLAAPLLQVPPSPPASPTLQAPRRP---PTPGPDTSVSGPRLTLALAPGPPPPP 884
Query: 948 SSGASFQHGGPG-APPSSSAYALPP-----------GTTGTLPAASELPASQRTGPQNGW 995
S S GP A SSSA + P G + P +EL A G
Sbjct: 885 SRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGP 944
Query: 996 NDPPALNRVP 1005
P A P
Sbjct: 945 APPLAFRGAP 954
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 58.5 bits (140), Expect = 4e-08
Identities = 91/356 (25%), Positives = 138/356 (38%), Gaps = 47/356 (13%)
Query: 790 QGEPVAGHESPKIPYEKQQLP-KGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGN 848
QG+P GH + P E L + +P AG P+++ PPP
Sbjct: 393 QGQPKGGHVTSMQPKEPGPLQCEAKPLGKAGVQLEPQLEAPLNEEMPLLPPPE----ESP 448
Query: 849 VNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRP--QQPVAPPTSNA 906
++P + PTSP +++ P P+ P A P P S RP + P++PP +
Sbjct: 449 LSPPPE-ESPTSPPPEASRLSPPPEELP---ASPLPEALHLS---RPLEESPLSPPPEES 501
Query: 907 YPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGAS--FQHGGPGAPPSS 964
+ P SS S +S L + SP S PPP +S S F+ PP
Sbjct: 502 PLSPPPESSPFSPLEESPLSPPEESPPSPALETPLS-PPPEASPLSPPFEESPLSPPPEE 560
Query: 965 SAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRV-------PKKKKMPENFMPP 1017
+ PP + P E P S ++ + PP +R+ P E+ + P
Sbjct: 561 LPTSPPPEASRLSPPPEESPMSP-PPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSP 619
Query: 1018 VPITSPIMNPLGD-PQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPL------ 1070
P S + P D P S ++ P +P P S+ S P P + P + PL
Sbjct: 620 PPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLS-PLPVVSRLSP-PPEESPLSPPPEE 677
Query: 1071 GQTGMPPSFSK-----------PNIEGAPGAPIGNTFQHVQSLPTKKITKKPIPDE 1115
T PP S+ P E +P +P + SLP ++ P+P+E
Sbjct: 678 SPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPE--DSLMSLPLEESPLLPLPEE 731
Score = 52.4 bits (124), Expect = 3e-06
Identities = 87/343 (25%), Positives = 117/343 (34%), Gaps = 68/343 (19%)
Query: 764 AAALAFLPDNTNQPNIMQLRDRLCRAQGEPVAGHESP-----KIPYE-KQQLPKGRPGPV 817
AA F+ T + D + V G +SP K+P + Q+P P +
Sbjct: 2120 AAPTIFIGSPTTPAGLSTSADGFLKPPAGSVPGPDSPGELFLKLPPQVPAQVPSQDPFGL 2179
Query: 818 AGHHQM-PRVQTQQ--YYPH----GENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPP 870
A + + PR T Y P+ G PP M G + AGQ PG HT P
Sbjct: 2180 APAYPLEPRFPTAPPTYPPYPSPTGAPAQPP---MLGASSRPGAGQ----PGEFHTTPPG 2232
Query: 871 YPQPQPYQP-------------------------------AQPYPFGTGGSAM-YRPQQP 898
P+ QP P P PFG A+ + ++
Sbjct: 2233 TPRHQPSTPDPFLKPRCPSLDNLAVPESPGVGGGKASEPLLSPPPFGESRKALEVKKEEL 2292
Query: 899 VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGP 958
A S PN ++ S SS T L +P S P S G + P
Sbjct: 2293 GASSPSYGPPNLGFVDSPSSGTHLGGLELKTPDVFKAPLTPRASQVEPQSPGLGLR---P 2349
Query: 959 GAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKKKMPENF--MP 1016
PP + A A P+ P R G P L P+ PE+ +P
Sbjct: 2350 QEPPPAQALA---------PSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPP-PESCCALP 2399
Query: 1017 PVPITS-PIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLP 1058
P + S P PQSQ Q P P PLS+++ P P P
Sbjct: 2400 PRSLPSDPFSRVPASPQSQSSSQSPLTPRPLSAEAFCPSPVTP 2442
Score = 50.8 bits (120), Expect = 8e-06
Identities = 69/251 (27%), Positives = 92/251 (36%), Gaps = 44/251 (17%)
Query: 858 PTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPN------TP 911
P SPG + ++PP P Q PFG + P+ P APPT YP+ P
Sbjct: 2153 PDSPGELFLKLPPQV---PAQVPSQDPFGLAPAYPLEPRFPTAPPTYPPYPSPTGAPAQP 2209
Query: 912 YISSASSYTGQSQ--------LYAAQHQASSP--------TSSPATSFPPPPSSGASFQH 955
+ ASS G Q +HQ S+P S + P P G
Sbjct: 2210 PMLGASSRPGAGQPGEFHTTPPGTPRHQPSTPDPFLKPRCPSLDNLAVPESPGVG----- 2264
Query: 956 GGPGAPPSSSAYALPPGTTGTLPAASELPASQRT-GPQN-GWNDPPA--LNRVPKKKKMP 1011
GG + P S EL AS + GP N G+ D P+ + + K P
Sbjct: 2265 GGKASEPLLSPPPFGESRKALEVKKEELGASSPSYGPPNLGFVDSPSSGTHLGGLELKTP 2324
Query: 1012 ENFMPPV-PITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPH----LPGGQPFHGV 1066
+ F P+ P S + +PQS L +P P P + + P H PG
Sbjct: 2325 DVFKAPLTPRASQV-----EPQSPGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTDPYA 2379
Query: 1067 QQPLGQTGMPP 1077
Q PL PP
Sbjct: 2380 QPPLTPRPQPP 2390
Score = 40.4 bits (93), Expect = 0.010
Identities = 67/263 (25%), Positives = 91/263 (34%), Gaps = 47/263 (17%)
Query: 840 PPGFIMHGNVNPNAAGQLPTSPGHMHTQVP-----PYPQPQPYQPAQPYPFGTG-----G 889
PP F V G +P M P P +P QP P P G G
Sbjct: 2515 PPNF-----VRSPGTGAFVGTPSPMRFTFPQAVGEPSLKPPVPQPGLPPPHGINSHFGPG 2569
Query: 890 SAMYRPQQP-VAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPP- 947
+ +PQ T N +P+ + +S TG+S SP P+ PP P
Sbjct: 2570 PTLGKPQSTNYTVATGNFHPSGSPLGPSSGSTGESY-------GLSPLRPPSVLPPPAPD 2622
Query: 948 ------SSGASFQHGGPGAPPSSSAYALPPGT-TGTLPAASELPASQRTGPQNGWNDPPA 1000
S GAS Q G +P PGT G+ A +ELP +Q G
Sbjct: 2623 GSLPYLSHGAS-QRSGITSPVEKRE---DPGTGMGSSLATAELPGTQDPGMSG------- 2671
Query: 1001 LNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQP----H 1056
L++ +K+ + + I I + + A P S + P
Sbjct: 2672 LSQTELEKQRQRQRLRELLIRQQIQRNTLRQEKETAAAAAGAVGPPGSWGAEPSSPAFEQ 2731
Query: 1057 LPGGQ-PFHGVQQPLGQTGMPPS 1078
L GQ PF G Q G+PPS
Sbjct: 2732 LSRGQTPFAGTQDKSSLVGLPPS 2754
Score = 39.7 bits (91), Expect = 0.018
Identities = 63/269 (23%), Positives = 91/269 (33%), Gaps = 42/269 (15%)
Query: 837 NPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQP------AQPYPFGTGGS 890
+PPP +M + + LP P P+ P+P +P +P+
Sbjct: 708 SPPPEDSLMSLPLEESPLLPLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEE 767
Query: 891 AMYRPQQPVAPPTSNAYPNTPYISSASS---YTGQSQLYAAQHQASSPTSSPATS----F 943
PQ P A P P++S + + Q + Q P SP
Sbjct: 768 PHLSPQPE--EPCLCAVPEEPHLSPQAEGPHLSPQPEELHLSPQTEEPHLSPVPEEPCLS 825
Query: 944 PPPPSSGASFQHGGP---------------GAPPSSSAYALPPGTTGTLPAASELPASQR 988
P P S S Q P PP S PP G PA ELP
Sbjct: 826 PQPEESHLSPQSEEPCLSPRPEESHLSPELEKPPLSPRPEKPPEEPGQCPAPEELPLFPP 885
Query: 989 TGPQNGWNDPPALNRVPKKKKMPENFMPPV-PITSPI-MNPLGDPQ-SQMLQQQPSAPVP 1045
G P+L+ + + + E PP+ P+ + ++P G+P S L P P
Sbjct: 886 PG-------EPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLPPP 938
Query: 1046 LSSQSSFPQPHLPGGQPFHGVQQPLGQTG 1074
LS + P P P ++ P G G
Sbjct: 939 LSPIITAAAP--PALSPLGELEYPFGAKG 965
Score = 35.0 bits (79), Expect = 0.44
Identities = 37/152 (24%), Positives = 52/152 (34%), Gaps = 20/152 (13%)
Query: 957 GPGAPPSSSAYALPPGTTG-----------TLPAASELPASQRTGPQNGWNDPPALNRVP 1005
GPG P + PG G T+ A A++ GP P A+ P
Sbjct: 3998 GPGMPAKPLQHFSSPGALGPTLLLTGKEQNTVDPAVSSEATE--GPSTHQGGPLAIGTTP 4055
Query: 1006 KKKKM-PENFMPPVPITSPIM--NPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQP 1062
+ P P + S ++ P PQ LQ QP +P Q H GG
Sbjct: 4056 ESMATEPGEVKPSLSGDSQLLLVQPQPQPQPSSLQLQPPLRLPGQQQQQVSLLHTAGG-- 4113
Query: 1063 FHGVQQPLGQTGMPPSFSKPNIEGAPGAPIGN 1094
G LG + S P++ P +G+
Sbjct: 4114 --GSHGQLGSGSSSEASSVPHLLAQPSVSLGD 4143
Score = 32.7 bits (73), Expect = 2.2
Identities = 43/159 (27%), Positives = 53/159 (33%), Gaps = 26/159 (16%)
Query: 922 QSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAAS 981
Q QL A Q S PP +Q G P G G P
Sbjct: 4219 QQQLQALLMQRQLQQSQAVRQTPP-------YQEPGTQTSPLQ-------GLLGCQPQLG 4264
Query: 982 ELPASQRTGPQNGWNDPPALNRVPKKKKMPENFMPPVPI-TSPIMNPLGDPQSQMLQQQP 1040
P Q TGP L P+ + P PP + T P++ P+ Q+P
Sbjct: 4265 GFPGPQ-TGPLQ------ELGAGPRPQGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQEP 4317
Query: 1041 SAPVPLSSQSSF--PQPHLPGGQPFHGVQQPLGQTGMPP 1077
P L S SS + LP P G +P G T PP
Sbjct: 4318 KRPSQLPSPSSQLPTEAQLPPTHP--GTPKPQGPTLEPP 4354
Score = 31.6 bits (70), Expect = 4.8
Identities = 52/233 (22%), Positives = 73/233 (31%), Gaps = 29/233 (12%)
Query: 822 QMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQ----VPPYPQPQPY 877
Q P ++ G PP PG ++ G +PT G + Q + PQ +
Sbjct: 4156 QQPMLERPMQNNTGPQPPKPGPVLQSGQGLPGVGIMPT-VGQLRAQLQGVLAKNPQLRHL 4214
Query: 878 QPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQ-LYAAQHQASSPT 936
P Q M R Q S A TP + T Q L Q
Sbjct: 4215 SPQQQQQL--QALLMQRQLQ-----QSQAVRQTPPYQEPGTQTSPLQGLLGCQ------- 4260
Query: 937 SSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGPQNGWN 996
P P P +G + G P PPG T P L T P +
Sbjct: 4261 --PQLGGFPGPQTGPLQELGAGPRPQGPPRLPAPPGALSTGPV---LGPVHPTPPPSSPQ 4315
Query: 997 DPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQ 1049
+P +++P P + +P P PQ L+ P P ++Q
Sbjct: 4316 EPKRPSQLPS----PSSQLPTEAQLPPTHPGTPKPQGPTLEPPPGRVSPAAAQ 4364
>gi|18677720 WD repeat and SOCS box-containing 1 isoform 1 [Homo
sapiens]
Length = 421
Score = 58.5 bits (140), Expect = 4e-08
Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 18/202 (8%)
Query: 143 NESEIYIWDLNNFATPMTPGAKTQPPEDISC--IAWNR----QVQHILASASPSGRATVW 196
N+ +I D + + G+ P + C I W+R Q Q +LA+ +GR +W
Sbjct: 97 NKPREHIIDCGDIVWSLAFGSSV-PEKQSRCVNIEWHRFRFGQDQLLLATGLNNGRIKIW 155
Query: 197 DLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRVL 256
D+ + ++ + DH+ + L + PD + +V AS D L ++WDL+ + ++VL
Sbjct: 156 DVYTGKLLLNLVDHTEVVR--DLTFAPDGSLILVSASRDKTL---RVWDLKDDGNMMKVL 210
Query: 257 ENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYELPTNTQWCFDIQWCPRNP 316
H + + A+S D +L S G + N + ++ +L + D+ C +P
Sbjct: 211 RGHQNWVYSCAFS-PDSSMLCSVGASKAVFLWNMDKYTMIRKLEGHHH---DVVACDFSP 266
Query: 317 --AVLSAASFDGRISVYSIMGG 336
A+L+ AS+D R+ ++ G
Sbjct: 267 DGALLATASYDTRVYIWDPHNG 288
Score = 44.3 bits (103), Expect = 7e-04
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 137 LVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRATVW 196
L+A+G N I IWD+ + T+ D++ + IL SAS VW
Sbjct: 142 LLATGLNNGRIKIWDVYTGKLLLNLVDHTEVVRDLT---FAPDGSLILVSASRDKTLRVW 198
Query: 197 DLRKNEPIIKV-SDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRV 255
DL+ + ++KV H N ++ A+ PD + + + + +W++ + +R
Sbjct: 199 DLKDDGNMMKVLRGHQNWVY--SCAFSPDSSMLCSVGAS----KAVFLWNMD-KYTMIRK 251
Query: 256 LENHARGILAIAWSMADPELLLSCGKDAKILCSNPNTGEVLYE 298
LE H ++A +S D LL + D ++ +P+ G++L E
Sbjct: 252 LEGHHHDVVACDFS-PDGALLATASYDTRVYIWDPHNGDILME 293
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 58.5 bits (140), Expect = 4e-08
Identities = 88/338 (26%), Positives = 115/338 (34%), Gaps = 34/338 (10%)
Query: 793 PVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPN 852
P G +P P P P G P + P P P G + +P
Sbjct: 1159 PKGGLATPP-PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL--ATPSPK 1215
Query: 853 AAGQLP--TSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNT 910
A P T P P P+ P PA P GG A P+ PP + P+
Sbjct: 1216 GAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATP-PSL 1274
Query: 911 PYISSASSYTGQSQ--LYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYA 968
+ + G + P +SP P PP++ G PG PP A
Sbjct: 1275 KGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPT 1334
Query: 969 LP------PGTTGTLPAASELPASQRTGPQNGWN-DPPALNRVPKKKKMPENFMPPVPIT 1021
P P T TLPA + T P + PPA P K P PP P
Sbjct: 1335 PPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPA--ATPSHKGGPA-MTPPSPKR 1391
Query: 1022 SP-IMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFS 1080
P I +P GDP S A +PLS + + P P + G P PP+ +
Sbjct: 1392 GPAIPSPKGDPTS-------PAVIPLSPKKA---PATPVTR--EGAATPSKGDLTPPAVT 1439
Query: 1081 KPNIEGAP--GAPIGN-TFQHVQSLPTKKITKKPIPDE 1115
+++ AP AP G + PT P P E
Sbjct: 1440 PVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKE 1477
Score = 56.2 bits (134), Expect = 2e-07
Identities = 82/324 (25%), Positives = 104/324 (32%), Gaps = 44/324 (13%)
Query: 790 QGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNV 849
+G P +P P PK P P + P+ G P P ++
Sbjct: 862 KGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPK--------EGPATPAPKQAPALSM 913
Query: 850 NPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGG----SAMYRPQQPVA-PPTS 904
++ + +P P P+ P PA P GG S + P P A PP+
Sbjct: 914 TSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSP 973
Query: 905 NAYPNTPYISSASSYTGQSQLYAAQHQASSPTSSPAT----SFPPPPSSGASFQHGGPGA 960
P TP A + + SP PAT P PP+ G P A
Sbjct: 974 KGGPATPSPKGAPTPPAAT--------PPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAA 1025
Query: 961 PP-----SSSAYALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKK--KMPEN 1013
P S+ A PP G+ PAA+ LP T P P P K P
Sbjct: 1026 TPFPKGASTPPAATPPSPKGS-PAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPA 1084
Query: 1014 FMPPVPITSPIM-NPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHLPGG--QPFHGVQQPL 1070
PP P P +P G P P A P S + P G P P
Sbjct: 1085 ATPPSPKGGPATPSPKGAP-------MPPAATPPSPKGGLATPPHKGAPTTPAATPPSPK 1137
Query: 1071 GQTGMPPSFSKPNIEGA-PGAPIG 1093
G PP P A P +P G
Sbjct: 1138 GGLATPPPKGAPTTPAATPPSPKG 1161
Score = 53.5 bits (127), Expect = 1e-06
Identities = 73/290 (25%), Positives = 94/290 (32%), Gaps = 35/290 (12%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHGENPPP---PGFIMHGNVNPNAAGQLPTSPGHMHT 866
PKG P P A P+ P PP P G P+ G PT P
Sbjct: 936 PKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGA-PTPPA---- 990
Query: 867 QVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLY 926
PP P+ P A P P G P P P + +P A++
Sbjct: 991 ATPPSPKGGP---ATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSP 1047
Query: 927 AAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPAS 986
AA ++PA + P P GGP A PS PP T P S
Sbjct: 1048 AATPLPKGAPTTPAATLPSP--------KGGP-ATPSLKGAPTPPAATPPSPKGGPATPS 1098
Query: 987 QRTGPQNGWNDPPALNRVPKKKKM---PENFMPPVPITSPIMNPLGDPQSQMLQQQPSAP 1043
+ P PPA K + P P P +P +P G + + P+ P
Sbjct: 1099 PKGAPM-----PPAATPPSPKGGLATPPHKGAPTTPAATP-PSPKGGLATPPPKGAPTTP 1152
Query: 1044 --VPLSSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAP 1091
P S + P P G P P G + P+ +GAP P
Sbjct: 1153 AATPPSPKGGLATPP-PKGAPTTPAATPPSPKG---GLATPSPKGAPTTP 1198
Score = 53.5 bits (127), Expect = 1e-06
Identities = 78/324 (24%), Positives = 108/324 (33%), Gaps = 54/324 (16%)
Query: 810 PKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVP 869
PKG P P A P+ P G PP P P+S G T
Sbjct: 1306 PKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTT--- 1362
Query: 870 PYPQPQPYQPAQPYPFGTGGSAMYRPQ--------QPVAPPTSNAY-PNTPYISSASSYT 920
P + P PA P GG AM P P PTS A P +P + A+ T
Sbjct: 1363 PSSKEGPTPPAAT-PSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVT 1421
Query: 921 GQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALP---------- 970
+ ++ + P +P + P +S GGP P S LP
Sbjct: 1422 REGAATPSKGDLTPPAVTPVSLKKAPATSAPK---GGPATPSSKGDPTLPAVTPPSPKEP 1478
Query: 971 --------------------PGTTGTLPAASELPASQRTGPQ--NGWNDPPALNRVPKKK 1008
P TLPA +P+S + P + DP A K
Sbjct: 1479 PAPKQVATSSSPKKAPATPAPMGAPTLPAV--IPSSPKEVPATPSSRRDPIAPTATLLSK 1536
Query: 1009 KMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAP-VPLSSQSSFPQPHLPGGQPFHGVQ 1067
K P P + P M ++ + AP P S ++S P P + G
Sbjct: 1537 KTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTP--STYKGAP 1594
Query: 1068 QPLGQTGMPPSFSKPNIEGAPGAP 1091
P + +PP+ + P+ + AP P
Sbjct: 1595 SP-KELLIPPAVTSPSPKEAPTPP 1617
Score = 52.8 bits (125), Expect = 2e-06
Identities = 86/324 (26%), Positives = 110/324 (33%), Gaps = 49/324 (15%)
Query: 789 AQGEPVAGHESPKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGN 848
A P A SPK LPKG P A P+ P P + G
Sbjct: 1032 ASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPK----------GGPATPS--LKGA 1079
Query: 849 VNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNAYP 908
P AA T P P P+ P PA P GG A P AP T A P
Sbjct: 1080 PTPPAA----TPPSPKGGPATPSPKGAPMPPAATPPSPKGGLAT--PPHKGAPTTPAATP 1133
Query: 909 NTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYA 968
+P A+ A A++P S PPP + P +P A
Sbjct: 1134 PSPKGGLATP----PPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATP 1189
Query: 969 LPPGTTGTLPAASELPASQRTG-----PQNGWNDPPALNRVPK---KKKMPENFMPPVPI 1020
P G T PAA+ P S + G P+ P A PK P+ P P
Sbjct: 1190 SPKGAP-TTPAAT--PPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKG-APTTPA 1245
Query: 1021 TSPIMNPLGDPQSQMLQQQPSAP--VPLSSQSSFPQPHLPGGQPFHGVQQPLGQTG---- 1074
+P +P G P + + P+ P P S + P G P V P G
Sbjct: 1246 ATP-PSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGA-PNPAVVTPPSPKGGPAT 1303
Query: 1075 -------MPPSFSKPNIEGAPGAP 1091
PP+ + P+ +G+PG P
Sbjct: 1304 SPPKGAPTPPAATPPSPKGSPGTP 1327
Score = 46.6 bits (109), Expect = 1e-04
Identities = 61/232 (26%), Positives = 82/232 (35%), Gaps = 25/232 (10%)
Query: 877 YQPAQPYPFGTGGSAMYRPQQPVAPPTS--NAYPNTPYISSASSYTGQSQLYAAQHQASS 934
Y P P G S Q PPT +A P+TP + +S + + ++ S
Sbjct: 789 YLADSPSPLGVSVSP-----QTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSF 843
Query: 935 PTS--SPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGT-----LPAASELPAS- 986
S SPAT+ P P S P S LPP T T LP E PA+
Sbjct: 844 QGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATP 903
Query: 987 ---QRTGPQNGWNDPPALNRVPKKKKMPENFMP---PVPITSPIMNPLGDPQSQMLQQQP 1040
Q + P P K +P + P P P + +P G P + + P
Sbjct: 904 APKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAP 963
Query: 1041 SAPVPL-SSQSSFPQPHLPGGQPFHGVQQPLGQTGMPPSFSKPNIEGAPGAP 1091
+ P S P P G P P G P + P+ +GAP P
Sbjct: 964 TPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGP---ATPSPKGAPTPP 1012
Score = 44.3 bits (103), Expect = 7e-04
Identities = 65/295 (22%), Positives = 102/295 (34%), Gaps = 39/295 (13%)
Query: 800 PKIPYEKQQLPKGRPGPVAGHHQMPRVQTQQYYPHGENPPPPGFIMHGNVNPNAAGQLPT 859
P +P PK P P Q+ + + P P P G V P++ ++P
Sbjct: 1465 PTLPAVTPPSPKEPPAP----KQVATSSSPKKAP--ATPAPMGAPTLPAVIPSSPKEVPA 1518
Query: 860 SPGHMHTQVPPY-------------PQPQPYQPAQPYPFGTGGSAMYRPQQPVAPPTSNA 906
+P + P P+ PA P A+ P++ A P+S
Sbjct: 1519 TPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKE 1578
Query: 907 YPNTPYISSASSYTGQSQLYAAQHQASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSA 966
+ P ++ S+Y G + + SP P PP+ GP P
Sbjct: 1579 ASSPPAVTP-STYKGAPSPKELLIPPAVTSPSPK-EAPTPPAVTPPSPEKGPATPAPKGT 1636
Query: 967 YALPPGTTGTLPAASELPASQRTGPQNGWNDPPALNRVPKKK---KMPENFMPPVPITSP 1023
PP T +L + PAS + G P A +P KK + E + P P ++P
Sbjct: 1637 PTSPPVTPSSLKDSPTSPASVTC--KMGATVPQASKGLPAKKGPTALKEVLVAPAPESTP 1694
Query: 1024 IMNPLGDPQSQMLQQQPSAPVPLSSQSSFPQPHL-PGGQPFHGVQQPLGQTGMPP 1077
I+ P+ P + +SS P + P +G + PL P
Sbjct: 1695 IIT------------APTRKGPQTKKSSATSPPICPDPSAKNGSKGPLSTVAPAP 1737
Score = 35.0 bits (79), Expect = 0.44
Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 30/179 (16%)
Query: 874 PQPYQPAQPYPFGT--GGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQ 931
P P P Q T G A + P+ P+APP S A +TP ++ A +
Sbjct: 1735 PAPLLPVQKDSSKTAKGKDASHSPKGPLAPPESKA--STPLTAA-----------AFEKV 1781
Query: 932 ASSPTSSPATSFPPPPSSGASFQHGGPGAPPSSSAYALPPGTTGTLPAASELPASQRTGP 991
P S+ ++ P PP S P PP PG P+ PA
Sbjct: 1782 LPKPESASVSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVLESPSKPLAPA------ 1835
Query: 992 QNGWNDPPALNRVPKKKKMPENFMPPVPITSPIMNPLGDPQSQMLQQQPSAPVPLSSQS 1050
++ L +P PE VP S ++N + + PSA P++ +
Sbjct: 1836 ----DEDELLPLIP-----PEPISGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPVTKNN 1885
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,634,602
Number of Sequences: 37866
Number of extensions: 3191316
Number of successful extensions: 20964
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 1506
Number of HSP's that attempted gapping in prelim test: 11912
Number of HSP's gapped (non-prelim): 6328
length of query: 1220
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1106
effective length of database: 13,930,794
effective search space: 15407458164
effective search space used: 15407458164
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.