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Search of human proteins with 116235487
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
(506 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 1021 0.0
gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 488 e-138
gi|221136756 chromodomain protein, Y chromosome-like isoform d [... 399 e-111
gi|221136753 chromodomain protein, Y chromosome-like isoform d [... 399 e-111
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 394 e-109
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 394 e-109
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 390 e-108
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 390 e-108
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 382 e-106
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 382 e-106
gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom... 175 8e-44
gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Hom... 160 3e-39
gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratas... 84 2e-16
gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo... 83 7e-16
gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein ... 79 1e-14
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 69 1e-11
gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre... 68 2e-11
gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 63 7e-10
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 57 4e-08
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 57 4e-08
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 57 4e-08
gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 55 1e-07
gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 55 1e-07
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 51 3e-06
gi|15082258 chromobox homolog 3 [Homo sapiens] 51 3e-06
gi|20544151 chromobox homolog 3 [Homo sapiens] 51 3e-06
gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Hom... 47 4e-05
gi|28372505 chromobox homolog 7 [Homo sapiens] 46 7e-05
gi|28559039 mediator complex subunit 1 [Homo sapiens] 45 1e-04
gi|10190682 chromobox homolog 8 [Homo sapiens] 45 2e-04
>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
Length = 506
Score = 1021 bits (2640), Expect = 0.0
Identities = 506/506 (100%), Positives = 506/506 (100%)
Query: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM
Sbjct: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
Query: 61 SKDKRIKSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGY 120
SKDKRIKSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGY
Sbjct: 61 SKDKRIKSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGY 120
Query: 121 SGKPSSGGDRATKTVSYRTTPSGLQIMPLKKSQNGMENGDAGSEKDERHFGNGSHQPGLD 180
SGKPSSGGDRATKTVSYRTTPSGLQIMPLKKSQNGMENGDAGSEKDERHFGNGSHQPGLD
Sbjct: 121 SGKPSSGGDRATKTVSYRTTPSGLQIMPLKKSQNGMENGDAGSEKDERHFGNGSHQPGLD 180
Query: 181 LNDHVGEQDMGECDVNHATLAENGLGSALTNGGLNLHSPVKRKLEAEKDYVFDKRLRYSV 240
LNDHVGEQDMGECDVNHATLAENGLGSALTNGGLNLHSPVKRKLEAEKDYVFDKRLRYSV
Sbjct: 181 LNDHVGEQDMGECDVNHATLAENGLGSALTNGGLNLHSPVKRKLEAEKDYVFDKRLRYSV 240
Query: 241 RQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLL 300
RQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLL
Sbjct: 241 RQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLL 300
Query: 301 SAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGL 360
SAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGL
Sbjct: 301 SAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGL 360
Query: 361 GASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQ 420
GASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQ
Sbjct: 361 GASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQ 420
Query: 421 EACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECL 480
EACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECL
Sbjct: 421 EACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECL 480
Query: 481 MLKQLWSSSKGLDSLFSYLQDKIYEV 506
MLKQLWSSSKGLDSLFSYLQDKIYEV
Sbjct: 481 MLKQLWSSSKGLDSLFSYLQDKIYEV 506
>gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
Length = 544
Score = 488 bits (1257), Expect = e-138
Identities = 279/543 (51%), Positives = 354/543 (65%), Gaps = 38/543 (6%)
Query: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
MAS +LYEVERIVDKRKNKKGK EYL+RWKGY S +DTWEPE HL++CEE+I +FN H
Sbjct: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
Query: 61 SKDKRIKSGKQSSTS-----KLLRDSRGPSVEKLSHRPSDPGKSKGTSHK---------R 106
K K + + TS K + S + K S + GK + + R
Sbjct: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
Query: 107 KRINPPLAKPKKGYSGKPSSGGDRATKTVSYRTTPSGLQ------IMPLKKSQNGMENGD 160
K P L+ K K V RT G Q + P+++ Q +
Sbjct: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
Query: 161 AGSEKDERHF-GNGSHQPGLDLNDHVGE---QDMGECDVNHAT-LAENGLGS-----ALT 210
+EK G G+ + + + Q G AT LA NG G+ ALT
Sbjct: 181 VAAEKPVGALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALT 240
Query: 211 -NGGLNLHSPV------KRK-LEAEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTH 262
NG N+ + V KRK ++ +D FDKRLR+SVRQ ES R+RDIVVRK++GFTH
Sbjct: 241 ANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTH 300
Query: 263 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSS 322
ILLS+++S+NN+L PE+M+EV+ AL AA DDSKL+LLSAVGSVFC GLD+ Y I RL+
Sbjct: 301 ILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTD 360
Query: 323 DRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTP 382
DR++EST++AEAIR+FV FIQFKKPI+VA+NGPA+GLGASILPLCD+VWA+EKAWFQTP
Sbjct: 361 DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTP 420
Query: 383 YATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVM 442
Y T +P GCS+ FP+I+G A ANEML GRKLTAQEAC +GLVSQVFWP TF+QEVM
Sbjct: 421 YTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVM 480
Query: 443 LRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDK 502
+R+KE+ASC+ VVLEESK LVR +K LE NE+EC +LK++W S++G+DS+ YLQ K
Sbjct: 481 VRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRK 540
Query: 503 IYE 505
I E
Sbjct: 541 IDE 543
>gi|221136756 chromodomain protein, Y chromosome-like isoform d
[Homo sapiens]
Length = 412
Score = 399 bits (1026), Expect = e-111
Identities = 204/319 (63%), Positives = 254/319 (79%), Gaps = 13/319 (4%)
Query: 200 LAENGLGS-----ALT-NGGLNLHSPV------KRK-LEAEKDYVFDKRLRYSVRQNESN 246
LA NG G+ ALT NG N+ + V KRK ++ +D FDKRLR+SVRQ ES
Sbjct: 93 LAVNGKGTSPFMDALTANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESA 152
Query: 247 CRFRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSV 306
R+RDIVVRK++GFTHILLS+++S+NN+L PE+M+EV+ AL AA DDSKL+LLSAVGSV
Sbjct: 153 YRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSV 212
Query: 307 FCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILP 366
FC GLD+ Y I RL+ DR++EST++AEAIR+FV FIQFKKPI+VA+NGPA+GLGASILP
Sbjct: 213 FCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILP 272
Query: 367 LCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRG 426
LCD+VWA+EKAWFQTPY T +P GCS+ FP+I+G A ANEML GRKLTAQEAC +G
Sbjct: 273 LCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKG 332
Query: 427 LVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLW 486
LVSQVFWP TF+QEVM+R+KE+ASC+ VVLEESK LVR +K LE NE+EC +LK++W
Sbjct: 333 LVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIW 392
Query: 487 SSSKGLDSLFSYLQDKIYE 505
S++G+DS+ YLQ KI E
Sbjct: 393 GSAQGMDSMLKYLQRKIDE 411
>gi|221136753 chromodomain protein, Y chromosome-like isoform d
[Homo sapiens]
Length = 412
Score = 399 bits (1026), Expect = e-111
Identities = 204/319 (63%), Positives = 254/319 (79%), Gaps = 13/319 (4%)
Query: 200 LAENGLGS-----ALT-NGGLNLHSPV------KRK-LEAEKDYVFDKRLRYSVRQNESN 246
LA NG G+ ALT NG N+ + V KRK ++ +D FDKRLR+SVRQ ES
Sbjct: 93 LAVNGKGTSPFMDALTANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESA 152
Query: 247 CRFRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSV 306
R+RDIVVRK++GFTHILLS+++S+NN+L PE+M+EV+ AL AA DDSKL+LLSAVGSV
Sbjct: 153 YRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSV 212
Query: 307 FCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILP 366
FC GLD+ Y I RL+ DR++EST++AEAIR+FV FIQFKKPI+VA+NGPA+GLGASILP
Sbjct: 213 FCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILP 272
Query: 367 LCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRG 426
LCD+VWA+EKAWFQTPY T +P GCS+ FP+I+G A ANEML GRKLTAQEAC +G
Sbjct: 273 LCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKG 332
Query: 427 LVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLW 486
LVSQVFWP TF+QEVM+R+KE+ASC+ VVLEESK LVR +K LE NE+EC +LK++W
Sbjct: 333 LVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIW 392
Query: 487 SSSKGLDSLFSYLQDKIYE 505
S++G+DS+ YLQ KI E
Sbjct: 393 GSAQGMDSMLKYLQRKIDE 411
>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
Length = 541
Score = 394 bits (1012), Expect = e-109
Identities = 225/544 (41%), Positives = 323/544 (59%), Gaps = 43/544 (7%)
Query: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
MAS + +EVE IVDKR++K G +YL+RWKGY +DTWEPE HL++CE+ + +FN
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 SKDKRIK---SGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPK 117
K K++ + + S + R SR + P P K H R + A K
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK---HHRSKNCKLFAASK 116
Query: 118 KGYSGKPSSGGDRATKTVSYRTTPSGLQIMPL--KKSQNGMENGD-----AGSEKDERHF 170
S+ D + T + P KK+ +G + + A ++D F
Sbjct: 117 NVRRKAASTLSDTKNMEIINSTIETLAPDSPFDHKKTVSGFQKLEKLDPIAADQQDTVVF 176
Query: 171 GNGSHQPGLDLNDHVGEQDMG----------ECDVNHATLAENGLGSAL----------- 209
+ D H G + G ++ + A GSA
Sbjct: 177 KVTEGKLLRDPLSHPGAEQTGIQNKTQMHPLMSQMSGSVTASMATGSATRKGIVVLIDPL 236
Query: 210 -TNGGLNLHSPVKRKLEAEKDYVFD-------KRLRYSVRQNESNCRFRDIVVRKEEGFT 261
NG ++H+ V R +++ D K++ +++R ES +RDIVV+KE+GFT
Sbjct: 237 AANGTTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTESAITYRDIVVKKEDGFT 296
Query: 262 HILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLS 321
I+LS+++++ NAL E++KE+ AL +AA DDSKL+L SA GSVFC GLD+ Y + L
Sbjct: 297 QIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLR 356
Query: 322 SDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQT 381
+DR S + + I++FV FIQFKKPIVV++NGPA+GLGASILPLCD+VWA+EKAWFQT
Sbjct: 357 NDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQT 416
Query: 382 PYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEV 441
PY T +P GCSS TFP+++G A ANEML GRKLTA+EAC++GLVSQVF TF+QEV
Sbjct: 417 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 476
Query: 442 MLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQD 501
M+++KE+AS +A+VLEE K LVR +K LE NE+EC +L+++WSS++G++S+ Y+++
Sbjct: 477 MIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVEN 536
Query: 502 KIYE 505
KI E
Sbjct: 537 KIDE 540
>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
Length = 541
Score = 394 bits (1012), Expect = e-109
Identities = 225/544 (41%), Positives = 323/544 (59%), Gaps = 43/544 (7%)
Query: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
MAS + +EVE IVDKR++K G +YL+RWKGY +DTWEPE HL++CE+ + +FN
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 SKDKRIK---SGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPK 117
K K++ + + S + R SR + P P K H R + A K
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK---HHRSKNCKLFAASK 116
Query: 118 KGYSGKPSSGGDRATKTVSYRTTPSGLQIMPL--KKSQNGMENGD-----AGSEKDERHF 170
S+ D + T + P KK+ +G + + A ++D F
Sbjct: 117 NVRRKAASTLSDTKNMEIINSTIETLAPDSPFDHKKTVSGFQKLEKLDPIAADQQDTVVF 176
Query: 171 GNGSHQPGLDLNDHVGEQDMG----------ECDVNHATLAENGLGSAL----------- 209
+ D H G + G ++ + A GSA
Sbjct: 177 KVTEGKLLRDPLSHPGAEQTGIQNKTQMHPLMSQMSGSVTASMATGSATRKGIVVLIDPL 236
Query: 210 -TNGGLNLHSPVKRKLEAEKDYVFD-------KRLRYSVRQNESNCRFRDIVVRKEEGFT 261
NG ++H+ V R +++ D K++ +++R ES +RDIVV+KE+GFT
Sbjct: 237 AANGTTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTESAITYRDIVVKKEDGFT 296
Query: 262 HILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLS 321
I+LS+++++ NAL E++KE+ AL +AA DDSKL+L SA GSVFC GLD+ Y + L
Sbjct: 297 QIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLR 356
Query: 322 SDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQT 381
+DR S + + I++FV FIQFKKPIVV++NGPA+GLGASILPLCD+VWA+EKAWFQT
Sbjct: 357 NDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQT 416
Query: 382 PYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEV 441
PY T +P GCSS TFP+++G A ANEML GRKLTA+EAC++GLVSQVF TF+QEV
Sbjct: 417 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 476
Query: 442 MLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQD 501
M+++KE+AS +A+VLEE K LVR +K LE NE+EC +L+++WSS++G++S+ Y+++
Sbjct: 477 MIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVEN 536
Query: 502 KIYE 505
KI E
Sbjct: 537 KIDE 540
>gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform
a [Homo sapiens]
Length = 540
Score = 390 bits (1002), Expect = e-108
Identities = 223/543 (41%), Positives = 321/543 (59%), Gaps = 42/543 (7%)
Query: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
MAS + +EVE IVDKR++K G +YL+RWKGY +DTWEPE HL++CE+ + +FN
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 SKDKRIK---SGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPK 117
K K++ + + S + R SR + P P K H R + A K
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK---HHRSKNRKLFAASK 116
Query: 118 KGYSGKPSSGGDRATKTVSYRTTPSGLQIMPLK-KSQNGMENGD-----AGSEKDERHFG 171
S D + T + P K+ +G + + A ++D F
Sbjct: 117 NVRRKAASILSDTKNMEIINSTIETLAPDSPFDHKTVSGFQKLEKLDPIAADQQDTVVFK 176
Query: 172 -------------NGSHQPGLDLNDHVG---EQDMGECDVNHATLAENGLGSAL------ 209
G+ Q G+ + Q G + AT + G +
Sbjct: 177 VTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQMSGSVTASMATGSATRKGIVVLIDPLA 236
Query: 210 TNGGLNLHSPVKRK-------LEAEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTH 262
NG ++H+ V R + +D F K++ +++R ES +RDIVV+KE+GFT
Sbjct: 237 ANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFTQ 296
Query: 263 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSS 322
I+LS+++++ NAL E++KE+ AL +AA DDSKL+L SA GSVFC GLD+ Y + L +
Sbjct: 297 IVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRN 356
Query: 323 DRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTP 382
+R S + + I++FV FIQFKKPIVV++NGPA+GLGASILPLCD+VWA+EKAWFQTP
Sbjct: 357 NRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTP 416
Query: 383 YATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVM 442
Y T +P GCSS TFP+++G A ANEML GRKLTA+EAC++GLVSQVF TF+QEVM
Sbjct: 417 YTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVM 476
Query: 443 LRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDK 502
+++KE+AS + +VLEE K LVR +K LE NE+EC +L+++WSS++G++S+ Y+++K
Sbjct: 477 IQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENK 536
Query: 503 IYE 505
I E
Sbjct: 537 IDE 539
>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
sapiens]
Length = 540
Score = 390 bits (1002), Expect = e-108
Identities = 223/543 (41%), Positives = 321/543 (59%), Gaps = 42/543 (7%)
Query: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
MAS + +EVE IVDKR++K G +YL+RWKGY +DTWEPE HL++CE+ + +FN
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 SKDKRIK---SGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPK 117
K K++ + + S + R SR + P P K H R + A K
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK---HHRSKNRKLFAASK 116
Query: 118 KGYSGKPSSGGDRATKTVSYRTTPSGLQIMPLK-KSQNGMENGD-----AGSEKDERHFG 171
S D + T + P K+ +G + + A ++D F
Sbjct: 117 NVRRKAASILSDTKNMEIINSTIETLAPDSPFDHKTVSGFQKLEKLDPIAADQQDTVVFK 176
Query: 172 -------------NGSHQPGLDLNDHVG---EQDMGECDVNHATLAENGLGSAL------ 209
G+ Q G+ + Q G + AT + G +
Sbjct: 177 VTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQMSGSVTASMATGSATRKGIVVLIDPLA 236
Query: 210 TNGGLNLHSPVKRK-------LEAEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTH 262
NG ++H+ V R + +D F K++ +++R ES +RDIVV+KE+GFT
Sbjct: 237 ANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFTQ 296
Query: 263 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSS 322
I+LS+++++ NAL E++KE+ AL +AA DDSKL+L SA GSVFC GLD+ Y + L +
Sbjct: 297 IVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRN 356
Query: 323 DRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTP 382
+R S + + I++FV FIQFKKPIVV++NGPA+GLGASILPLCD+VWA+EKAWFQTP
Sbjct: 357 NRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTP 416
Query: 383 YATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVM 442
Y T +P GCSS TFP+++G A ANEML GRKLTA+EAC++GLVSQVF TF+QEVM
Sbjct: 417 YTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVM 476
Query: 443 LRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDK 502
+++KE+AS + +VLEE K LVR +K LE NE+EC +L+++WSS++G++S+ Y+++K
Sbjct: 477 IQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENK 536
Query: 503 IYE 505
I E
Sbjct: 537 IDE 539
>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b
[Homo sapiens]
Length = 554
Score = 382 bits (980), Expect = e-106
Identities = 219/533 (41%), Positives = 314/533 (58%), Gaps = 42/533 (7%)
Query: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
MAS + +EVE IVDKR++K G +YL+RWKGY +DTWEPE HL++CE+ + +FN
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 SKDKRIK---SGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPK 117
K K++ + + S + R SR + P P K H R + A K
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK---HHRSKNRKLFAASK 116
Query: 118 KGYSGKPSSGGDRATKTVSYRTTPSGLQIMPLK-KSQNGMENGD-----AGSEKDERHFG 171
S D + T + P K+ +G + + A ++D F
Sbjct: 117 NVRRKAASILSDTKNMEIINSTIETLAPDSPFDHKTVSGFQKLEKLDPIAADQQDTVVFK 176
Query: 172 -------------NGSHQPGLDLNDHVG---EQDMGECDVNHATLAENGLGSAL------ 209
G+ Q G+ + Q G + AT + G +
Sbjct: 177 VTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQMSGSVTASMATGSATRKGIVVLIDPLA 236
Query: 210 TNGGLNLHSPVKRK-------LEAEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTH 262
NG ++H+ V R + +D F K++ +++R ES +RDIVV+KE+GFT
Sbjct: 237 ANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFTQ 296
Query: 263 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSS 322
I+LS+++++ NAL E++KE+ AL +AA DDSKL+L SA GSVFC GLD+ Y + L +
Sbjct: 297 IVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRN 356
Query: 323 DRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTP 382
+R S + + I++FV FIQFKKPIVV++NGPA+GLGASILPLCD+VWA+EKAWFQTP
Sbjct: 357 NRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTP 416
Query: 383 YATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVM 442
Y T +P GCSS TFP+++G A ANEML GRKLTA+EAC++GLVSQVF TF+QEVM
Sbjct: 417 YTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVM 476
Query: 443 LRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSL 495
+++KE+AS + +VLEE K LVR +K LE NE+EC +L+++WSS++G++S+
Sbjct: 477 IQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESM 529
>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
sapiens]
Length = 554
Score = 382 bits (980), Expect = e-106
Identities = 219/533 (41%), Positives = 314/533 (58%), Gaps = 42/533 (7%)
Query: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
MAS + +EVE IVDKR++K G +YL+RWKGY +DTWEPE HL++CE+ + +FN
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 SKDKRIK---SGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPK 117
K K++ + + S + R SR + P P K H R + A K
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK---HHRSKNRKLFAASK 116
Query: 118 KGYSGKPSSGGDRATKTVSYRTTPSGLQIMPLK-KSQNGMENGD-----AGSEKDERHFG 171
S D + T + P K+ +G + + A ++D F
Sbjct: 117 NVRRKAASILSDTKNMEIINSTIETLAPDSPFDHKTVSGFQKLEKLDPIAADQQDTVVFK 176
Query: 172 -------------NGSHQPGLDLNDHVG---EQDMGECDVNHATLAENGLGSAL------ 209
G+ Q G+ + Q G + AT + G +
Sbjct: 177 VTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQMSGSVTASMATGSATRKGIVVLIDPLA 236
Query: 210 TNGGLNLHSPVKRK-------LEAEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTH 262
NG ++H+ V R + +D F K++ +++R ES +RDIVV+KE+GFT
Sbjct: 237 ANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFTQ 296
Query: 263 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSS 322
I+LS+++++ NAL E++KE+ AL +AA DDSKL+L SA GSVFC GLD+ Y + L +
Sbjct: 297 IVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRN 356
Query: 323 DRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTP 382
+R S + + I++FV FIQFKKPIVV++NGPA+GLGASILPLCD+VWA+EKAWFQTP
Sbjct: 357 NRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTP 416
Query: 383 YATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVM 442
Y T +P GCSS TFP+++G A ANEML GRKLTA+EAC++GLVSQVF TF+QEVM
Sbjct: 417 YTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVM 476
Query: 443 LRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSL 495
+++KE+AS + +VLEE K LVR +K LE NE+EC +L+++WSS++G++S+
Sbjct: 477 IQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESM 529
>gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Homo
sapiens]
Length = 364
Score = 175 bits (444), Expect = 8e-44
Identities = 96/254 (37%), Positives = 151/254 (59%), Gaps = 1/254 (0%)
Query: 249 FRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFC 308
F +VV E+G T I+ + + NA+ E+ E+ RAL A+ DDS + +L+ G +
Sbjct: 109 FETLVVTSEDGITKIMFN-RPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYS 167
Query: 309 SGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLC 368
SG D + +++ A +R+FV FI F KP++ +NGPA+G+ ++L L
Sbjct: 168 SGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLF 227
Query: 369 DIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLV 428
D V+AS++A F TP++ + +P GCSSYTFP+I+ A A EML G+KLTA EAC++GLV
Sbjct: 228 DAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLV 287
Query: 429 SQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSS 488
++VF +TF +EV R+K A L SK ++R + L VN +EC +L+ W S
Sbjct: 288 TEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLS 347
Query: 489 SKGLDSLFSYLQDK 502
+ +++ ++L K
Sbjct: 348 DECTNAVVNFLSRK 361
>gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Homo
sapiens]
Length = 227
Score = 160 bits (404), Expect = 3e-39
Identities = 86/221 (38%), Positives = 134/221 (60%)
Query: 282 EVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKA 341
E+ RAL A+ DDS + +L+ G + SG D + +++ A +R+FV
Sbjct: 4 EIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGC 63
Query: 342 FIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQI 401
FI F KP++ +NGPA+G+ ++L L D V+AS++A F TP++ + +P GCSSYTFP+I
Sbjct: 64 FIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKI 123
Query: 402 LGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKC 461
+ A A EML G+KLTA EAC++GLV++VF +TF +EV R+K A L SK
Sbjct: 124 MSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKE 183
Query: 462 LVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDK 502
++R + L VN +EC +L+ W S + +++ ++L K
Sbjct: 184 VIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRK 224
>gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratase 1
precursor [Homo sapiens]
Length = 290
Score = 84.3 bits (207), Expect = 2e-16
Identities = 60/233 (25%), Positives = 118/233 (50%), Gaps = 11/233 (4%)
Query: 273 NALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIA 332
NAL ++ E+ +AL D AVG++ +G D ++ G + + S +
Sbjct: 59 NALCDGLIDELNQALKTFEEDP-------AVGAIVLTGGDKAFAAGADIKEMQNLSFQDC 111
Query: 333 EAIRDFVKAF---IQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLT 389
+ + F+K + Q KKP++ A+NG A G G + +CDI++A EKA F P I
Sbjct: 112 YSSK-FLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTI 170
Query: 390 PAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMA 449
P + + +G +LA EM+ G +++AQ+A GLVS++ T +E + +++A
Sbjct: 171 PGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIA 230
Query: 450 SCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDK 502
S S +V+ +K V + + L + ++ E + +++ + + ++++ +
Sbjct: 231 SNSKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKR 283
>gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo
sapiens]
Length = 303
Score = 82.8 bits (203), Expect = 7e-16
Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 15/229 (6%)
Query: 250 RDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRR-ALCNAATDDSKLLLLSAVGSVFC 308
R R+ +G +I+LS+ N L+ ++K ++ L +A ++D K++++SA G VF
Sbjct: 46 RPTSARQLDGIRNIVLSNPKK-RNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
Query: 309 SGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLC 368
SG D L D E + + ++ P++ +NG A G ++ C
Sbjct: 105 SGHDLKELTEEQGRDYHAEVFQTCSKVMMHIR---NHPVPVIAMVNGLATAAGCQLVASC 161
Query: 369 DIVWASEKAWFQTPYATIRL---TPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSR 425
DI AS+K+ F TP + L TP + P+ +A EMLF G ++AQEA
Sbjct: 162 DIAVASDKSSFATPGVNVGLFCSTPGVALARAVPR----KVALEMLFTGEPISAQEALLH 217
Query: 426 GLVSQVFWPTTFSQEVMLRVKEMASCSAVVLEESKCLVRSFLKSVLEDV 474
GL+S+V +E M +++AS S V+ K +F K + +D+
Sbjct: 218 GLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKA---TFYKQLPQDL 263
>gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein
[Homo sapiens]
Length = 328
Score = 79.0 bits (193), Expect = 1e-14
Identities = 62/238 (26%), Positives = 116/238 (48%), Gaps = 20/238 (8%)
Query: 253 VVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATD-DSKLLLLSAVGSVFCSGL 311
V ++ H+ L+ + + NA+ +E+ + D D + +++S G +F +G+
Sbjct: 60 VTSAQKHVLHVQLN-RPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGI 118
Query: 312 DYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQF-------KKPIVVAINGPALGLGASI 364
D + + + + RI+ +RD + + + KP++ A++G +G G +
Sbjct: 119 DLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDL 178
Query: 365 LPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILG-VALANEMLFCGRKLTAQEAC 423
+ CDI + ++ A+FQ + L + P+++G +L NE+ F RK+ A EA
Sbjct: 179 VTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEAL 238
Query: 424 SRGLVSQVFWPTTFSQEVML-----RVKEMASCSAVVLEESKC-LVRSFLKSVLEDVN 475
GLVS+VF +EVML E++S S V ++ +K L+ S SV E +N
Sbjct: 239 GSGLVSRVF----PDKEVMLDAALALAAEISSKSPVAVQSTKVNLLYSRDHSVAESLN 292
>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
Length = 860
Score = 68.9 bits (167), Expect = 1e-11
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 5 DLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEF-NGLHMSKD 63
D++EVE+I+D K + GK Y +RWKGY S +DTWEPE HL C+E + EF + +K
Sbjct: 57 DVFEVEKILDM-KTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENKA 115
Query: 64 KRIKSGKQ--SSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGYS 121
K ++ Q S + + + + + + P K K +R+ +P K KK +
Sbjct: 116 KAVRKDIQRLSLNNDIFEANSDSDQQSETKEDTSPKKKKKKLRQREEKSPDDLKKKKAKA 175
Query: 122 GK 123
GK
Sbjct: 176 GK 177
>gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase
precursor [Homo sapiens]
Length = 339
Score = 68.2 bits (165), Expect = 2e-11
Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 12/202 (5%)
Query: 234 KRLRYSVRQNESNCRFRDIVVRKEEGFTHILLS-SQTSDNNALTPEIMKEVRRALCNAAT 292
KR S + E R R + +EE ++L ++ N+L+ ++K + +A+ +A
Sbjct: 64 KRGYSSEMKTEDELRVRHL---EEENRGIVVLGINRAYGKNSLSKNLIKMLSKAV-DALK 119
Query: 293 DDSK---LLLLSAVGSVFCSGLDYSYLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPI 349
D K +++ S V +FC+G D SS+ ++I I D + P
Sbjct: 120 SDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPV----PT 175
Query: 350 VVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANE 409
+ AI+G ALG G + CDI A+ A + + P G + P+ +G++LA E
Sbjct: 176 IAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKE 235
Query: 410 MLFCGRKLTAQEACSRGLVSQV 431
++F R L +EA + GL+S V
Sbjct: 236 LIFSARVLDGKEAKAVGLISHV 257
>gi|20127408 mitochondrial trifunctional protein, alpha subunit
precursor [Homo sapiens]
Length = 763
Score = 62.8 bits (151), Expect = 7e-10
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 263 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDS--KLLLLSAVGSVFCSGLDYSYLIGRL 320
+ ++S S N L+ E+ E + D +L+S+ F +G D + L
Sbjct: 52 VRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLA--- 108
Query: 321 SSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCD--IVWASEKAW 378
+ +E T++++ + V+ + KPIV AING LG G + C I K
Sbjct: 109 ACKTLQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTV 168
Query: 379 FQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWP 434
TP + P + P+++GV A +M+ GR + A A GLV Q+ P
Sbjct: 169 LGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVEP 224
>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 57.0 bits (136), Expect = 4e-08
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 7 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66
Y VE+++D+R KG+ EYL++WKG+ +TWEPE + L C E I EF M K K++
Sbjct: 20 YVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKN-LDCPELISEF----MKKYKKM 73
Query: 67 KSGKQS 72
K G+ +
Sbjct: 74 KEGENN 79
>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 57.0 bits (136), Expect = 4e-08
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 7 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66
Y VE+++D+R KG+ EYL++WKG+ +TWEPE + L C E I EF M K K++
Sbjct: 20 YVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKN-LDCPELISEF----MKKYKKM 73
Query: 67 KSGKQS 72
K G+ +
Sbjct: 74 KEGENN 79
>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 57.0 bits (136), Expect = 4e-08
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 7 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66
Y VE+++D+R KG+ EYL++WKG+ +TWEPE + L C E I EF M K K++
Sbjct: 20 YVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKN-LDCPELISEF----MKKYKKM 73
Query: 67 KSGKQS 72
K G+ +
Sbjct: 74 KEGENN 79
>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 55.1 bits (131), Expect = 1e-07
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 7 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66
Y VE+++D+R KGK EYL++WKG+ ++TWEPE + L C + I EF L K
Sbjct: 21 YVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEEN-LDCPDLIAEF--LQSQKTAHE 76
Query: 67 KSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGYSGKPSS 126
+ K DS E S P K K S K + L +P++ SS
Sbjct: 77 TDKSEGGKRKADSDSEDKGEE------SKPKKKKEESEKPRGFARGL-EPERIIGATDSS 129
Query: 127 G 127
G
Sbjct: 130 G 130
>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 55.1 bits (131), Expect = 1e-07
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 7 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66
Y VE+++D+R KGK EYL++WKG+ ++TWEPE + L C + I EF L K
Sbjct: 21 YVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEEN-LDCPDLIAEF--LQSQKTAHE 76
Query: 67 KSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGYSGKPSS 126
+ K DS E S P K K S K + L +P++ SS
Sbjct: 77 TDKSEGGKRKADSDSEDKGEE------SKPKKKKEESEKPRGFARGL-EPERIIGATDSS 129
Query: 127 G 127
G
Sbjct: 130 G 130
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 50.8 bits (120), Expect = 3e-06
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 6 LYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKR 65
++ E I+ KR +KGK EYL++W+G+ S ++WEPE ++L + H + +
Sbjct: 11 VFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQN 69
Query: 66 IKSGK--QSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGYSGK 123
K GK + KL S KL P P KSK +S + + ++ S
Sbjct: 70 RKRGKRPRGRPRKLTAMSSCSRRSKLK-EPDAPSKSKSSSSSSSSTSSSSSSDEEDDSDL 128
Query: 124 PSSGGDRATKT 134
+ G R +T
Sbjct: 129 DAKRGPRGRET 139
>gi|15082258 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 50.8 bits (120), Expect = 3e-06
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 2 ASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMS 61
A + + VE+++D+R GK EY ++WKG+ ++TWEPE + L C E I+ F
Sbjct: 25 AEPEEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEEN-LDCPELIEAFLNSQ-- 80
Query: 62 KDKRIKSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSK 100
K+GK+ G + LS SD KSK
Sbjct: 81 -----KAGKEKD---------GTKRKSLSDSESDDSKSK 105
>gi|20544151 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 50.8 bits (120), Expect = 3e-06
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 2 ASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMS 61
A + + VE+++D+R GK EY ++WKG+ ++TWEPE + L C E I+ F
Sbjct: 25 AEPEEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEEN-LDCPELIEAFLNSQ-- 80
Query: 62 KDKRIKSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSK 100
K+GK+ G + LS SD KSK
Sbjct: 81 -----KAGKEKD---------GTKRKSLSDSESDDSKSK 105
>gi|150378541 enoyl Coenzyme A hydratase domain containing 2 [Homo
sapiens]
Length = 261
Score = 47.0 bits (110), Expect = 4e-05
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 38/175 (21%)
Query: 257 EEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLL--SAVGSVFCSGLDYS 314
++G T IL++ + S NAL + E+ L D +LL S V VFC+G D
Sbjct: 39 DQGITEILMN-RPSARNALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADL- 96
Query: 315 YLIGRLSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWAS 374
KE +++EA V F+Q + + + DI ++
Sbjct: 97 -----------KEREQMSEAE---VGVFVQRLRGL-----------------MNDIASSA 125
Query: 375 EKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVS 429
+T T L P + P+ LGVALA E++F GR+L+ EA GLV+
Sbjct: 126 VMGLIET---TRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVN 177
>gi|28372505 chromobox homolog 7 [Homo sapiens]
Length = 251
Score = 46.2 bits (108), Expect = 7e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 13 VDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL 46
+ K++ +KGK EYL++WKG+ TWEPE H+L
Sbjct: 16 IRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL 49
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Query: 64 KRIKSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGYSGK 123
KR+K G +S S L K S PS+ GKSK KRK+ + P S +
Sbjct: 970 KRVKEGNGTSNSTLSGPGLDSKPGKRSRTPSNDGKSKDKPPKRKKADTEGKSPSHSSSNR 1029
Query: 124 P-----SSGGDRATKTVSYRTTPSGLQIMPLKKSQNGMENGDAGSEKDERH 169
P S+GG ++ + TP G+ P+ K + G K H
Sbjct: 1030 PFTPPTSTGGSKSPGSAGRSQTPPGVATPPIPKITIQIPKGTVMVGKPSSH 1080
>gi|10190682 chromobox homolog 8 [Homo sapiens]
Length = 389
Score = 45.1 bits (105), Expect = 2e-04
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 15 KRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL 46
KR+ +KG+ EYL++WKG+ TWEPE ++L
Sbjct: 18 KRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL 49
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,931,869
Number of Sequences: 37866
Number of extensions: 941226
Number of successful extensions: 3114
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 3000
Number of HSP's gapped (non-prelim): 169
length of query: 506
length of database: 18,247,518
effective HSP length: 107
effective length of query: 399
effective length of database: 14,195,856
effective search space: 5664146544
effective search space used: 5664146544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.