Guide to the Human Genome
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Name: CDY1 Sequence: fasta or formatted (554aa) NCBI GI: 4757966
Description:

Y chromosome chromodomain protein 1, telomeric isoform b

Referenced in:

Nonhistone Chromosomal Proteins
Y-linked Genes

Other entries for this name:
alt prot [540aa] Y chromosome chromodomain protein 1, telomeric isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         42           3
 C cysteine            2.0         11           2
 D aspartate           5.1         28           2
 E glutamate           5.6         31           2
 F phenylalanine       4.2         23           1
 G glycine             4.9         27           2
 H histidine           1.6          9           2
 I isoleucine          5.8         32           2
 K lysine              8.7         48           2
 L leucine             7.2         40           2
 M methionine          2.5         14           2
 N asparagine          5.6         31           2
 P proline             4.2         23           2
 Q glutamine           4.9         27           2
 R arginine            5.6         31           3
 S serine              7.6         42           2
 T threonine           8.1         45           3
 V valine              6.3         35           2
 W tryptophan          1.3          7           1
 Y tyrosine            1.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Y chromosome chromodomain protein 1, telomeric isofor... 
CDY1B                 1.000   chromodomain protein, Y-linked, 1B isoform b 
CDY1                  0.952   Y chromosome chromodomain protein 1, telomeric isofo...
CDY1B                 0.952   chromodomain protein, Y-linked, 1B isoform a 
CDY2B                 0.929   Y chromosome chromodomain protein 2B 
CDY2A                 0.929   Y chromosome chromodomain protein 2A 
CDYL                  0.601   chromodomain protein, Y chromosome-like isoform a [...
CDYL                  0.446   chromodomain protein, Y chromosome-like isoform d [...
CDYL                  0.446   chromodomain protein, Y chromosome-like isoform d [...
CDYL2                 0.330   chromodomain protein, Y-like 2 
PECI                  0.150   peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom...
PECI                  0.126   peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Hom...
ECHS1                 0.055   mitochondrial short-chain enoyl-coenzyme A hydratas...
ECH1                  0.052   peroxisomal enoyl-coenzyme A hydratase-like protein ...
ECHDC3                0.045   enoyl Coenzyme A hydratase domain containing 3 [Homo...
MPHOSPH8              0.039   M-phase phosphoprotein 8 
AUH                   0.037   AU RNA binding protein/enoyl-Coenzyme A hydratase pre...
EHHADH                0.030   enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A...
HADHA                 0.030   mitochondrial trifunctional protein, alpha subunit p...
CBX3                  0.028   chromobox homolog 3 
CBX3                  0.028   chromobox homolog 3 
CBX5                  0.028   heterochromatin protein 1-alpha 
CBX5                  0.028   heterochromatin protein 1-alpha 
CBX5                  0.028   heterochromatin protein 1-alpha 
ECHDC1                0.026   enoyl Coenzyme A hydratase domain containing 1 isof...
ECHDC1                0.026   enoyl Coenzyme A hydratase domain containing 1 isof...
CBX1                  0.025   heterochromatin protein 1-beta 
CBX1                  0.025   heterochromatin protein 1-beta 
ECHDC1                0.023   enoyl Coenzyme A hydratase domain containing 1 isof...
HIBCH                 0.022   3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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