Guide to the Human Genome
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Name: CDY1 Sequence: fasta or formatted (540aa) NCBI GI: 25453481
Description:

Y chromosome chromodomain protein 1, telomeric isoform a

Referenced in:

Nonhistone Chromosomal Proteins
Y-linked Genes

Other entries for this name:
alt prot [554aa] Y chromosome chromodomain protein 1, telomeric isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         40           3
 C cysteine            1.9         10           2
 D aspartate           5.2         28           2
 E glutamate           6.1         33           2
 F phenylalanine       4.3         23           1
 G glycine             4.8         26           2
 H histidine           1.7          9           2
 I isoleucine          5.9         32           2
 K lysine              8.7         47           2
 L leucine             7.0         38           2
 M methionine          2.6         14           2
 N asparagine          5.7         31           2
 P proline             3.5         19           1
 Q glutamine           4.6         25           2
 R arginine            5.4         29           3
 S serine              7.8         42           2
 T threonine           8.1         44           3
 V valine              6.7         36           2
 W tryptophan          1.1          6           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Y chromosome chromodomain protein 1, telomeric isofo... 
CDY1B                 1.000   chromodomain protein, Y-linked, 1B isoform a 
CDY1                  0.982   Y chromosome chromodomain protein 1, telomeric isofor...
CDY1B                 0.982   chromodomain protein, Y-linked, 1B isoform b 
CDY2B                 0.976   Y chromosome chromodomain protein 2B 
CDY2A                 0.976   Y chromosome chromodomain protein 2A 
CDYL                  0.633   chromodomain protein, Y chromosome-like isoform a [...
CDYL                  0.473   chromodomain protein, Y chromosome-like isoform d [...
CDYL                  0.473   chromodomain protein, Y chromosome-like isoform d [...
CDYL2                 0.348   chromodomain protein, Y-like 2 
PECI                  0.157   peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom...
PECI                  0.133   peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Hom...
ECHS1                 0.061   mitochondrial short-chain enoyl-coenzyme A hydratas...
ECH1                  0.053   peroxisomal enoyl-coenzyme A hydratase-like protein ...
ECHDC3                0.047   enoyl Coenzyme A hydratase domain containing 3 [Homo...
MPHOSPH8              0.040   M-phase phosphoprotein 8 
AUH                   0.037   AU RNA binding protein/enoyl-Coenzyme A hydratase pre...
EHHADH                0.031   enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A...
HADHA                 0.031   mitochondrial trifunctional protein, alpha subunit p...
CBX3                  0.029   chromobox homolog 3 
CBX3                  0.029   chromobox homolog 3 
CBX5                  0.029   heterochromatin protein 1-alpha 
CBX5                  0.029   heterochromatin protein 1-alpha 
CBX5                  0.029   heterochromatin protein 1-alpha 
ECHDC1                0.027   enoyl Coenzyme A hydratase domain containing 1 isof...
ECHDC1                0.027   enoyl Coenzyme A hydratase domain containing 1 isof...
CBX1                  0.026   heterochromatin protein 1-beta 
CBX1                  0.026   heterochromatin protein 1-beta 
ECHDC1                0.024   enoyl Coenzyme A hydratase domain containing 1 isof...
HIBCH                 0.023   3-hydroxyisobutyryl-Coenzyme A hydrolase isoform 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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