Guide to the Human Genome
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Name: CDYL2 Sequence: fasta or formatted (506aa) NCBI GI: 116235487
Description:

chromodomain protein, Y-like 2

Referenced in:

Nonhistone Chromosomal Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         29           2
 C cysteine            2.4         12           1
 D aspartate           5.3         27           2
 E glutamate           7.1         36           2
 F phenylalanine       3.4         17           1
 G glycine             7.5         38           2
 H histidine           2.4         12           2
 I isoleucine          4.0         20           1
 K lysine              8.7         44           2
 L leucine            10.3         52           4
 M methionine          2.0         10           1
 N asparagine          3.8         19           2
 P proline             4.0         20           2
 Q glutamine           3.0         15           1
 R arginine            6.1         31           2
 S serine             10.5         53           3
 T threonine           4.3         22           2
 V valine              5.7         29           2
 W tryptophan          1.4          7           1
 Y tyrosine            2.6         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromodomain protein, Y-like 2 
CDYL                  0.465   chromodomain protein, Y chromosome-like isoform a [...
CDYL                  0.376   chromodomain protein, Y chromosome-like isoform d [...
CDYL                  0.376   chromodomain protein, Y chromosome-like isoform d [...
CDY2B                 0.370   Y chromosome chromodomain protein 2B 
CDY2A                 0.370   Y chromosome chromodomain protein 2A 
CDY1                  0.366   Y chromosome chromodomain protein 1, telomeric isofo...
CDY1B                 0.366   chromodomain protein, Y-linked, 1B isoform a 
CDY1                  0.358   Y chromosome chromodomain protein 1, telomeric isofor...
CDY1B                 0.358   chromodomain protein, Y-linked, 1B isoform b 
PECI                  0.151   peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom...
PECI                  0.136   peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Hom...
ECHS1                 0.059   mitochondrial short-chain enoyl-coenzyme A hydratas...
ECHDC3                0.058   enoyl Coenzyme A hydratase domain containing 3 [Homo...
ECH1                  0.054   peroxisomal enoyl-coenzyme A hydratase-like protein ...
MPHOSPH8              0.044   M-phase phosphoprotein 8 
AUH                   0.043   AU RNA binding protein/enoyl-Coenzyme A hydratase pre...
HADHA                 0.038   mitochondrial trifunctional protein, alpha subunit p...
CBX5                  0.032   heterochromatin protein 1-alpha 
CBX5                  0.032   heterochromatin protein 1-alpha 
CBX5                  0.032   heterochromatin protein 1-alpha 
CBX1                  0.030   heterochromatin protein 1-beta 
CBX1                  0.030   heterochromatin protein 1-beta 
CBX2                  0.026   chromobox homolog 2 isoform 1 
CBX3                  0.026   chromobox homolog 3 
CBX3                  0.026   chromobox homolog 3 
ECHDC2                0.022   enoyl Coenzyme A hydratase domain containing 2 [Hom...
CBX7                  0.021   chromobox homolog 7 
MED1                  0.020   mediator complex subunit 1 
CBX8                  0.020   chromobox homolog 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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