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Search of human proteins with 239741790
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741790 PREDICTED: hypothetical protein XP_002342301 [Homo
sapiens]
(164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741790 PREDICTED: hypothetical protein XP_002342301 [Homo ... 364 e-101
gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo ... 40 0.001
gi|239754993 PREDICTED: hypothetical protein [Homo sapiens] 38 0.003
gi|12669915 E2F transcription factor 4 [Homo sapiens] 36 0.013
gi|239757093 PREDICTED: hypothetical protein [Homo sapiens] 33 0.11
gi|239751599 PREDICTED: hypothetical protein XP_002347926 [Homo ... 33 0.11
gi|239746114 PREDICTED: hypothetical protein XP_002344193 [Homo ... 33 0.11
gi|154800453 tastin isoform 1 [Homo sapiens] 33 0.14
gi|239742763 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|239740974 PREDICTED: hypothetical protein [Homo sapiens] 32 0.25
gi|13375642 kringle-containing transmembrane protein 2 isoform b... 32 0.25
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 32 0.32
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 32 0.32
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 32 0.32
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 31 0.42
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 31 0.42
gi|169209171 PREDICTED: hypothetical protein [Homo sapiens] 31 0.55
gi|239508696 PREDICTED: hypothetical protein [Homo sapiens] 31 0.55
gi|94681038 phospholipase D4 [Homo sapiens] 31 0.55
gi|194272180 plexin B1 [Homo sapiens] 31 0.55
gi|40254442 plexin B1 [Homo sapiens] 31 0.55
gi|116235456 ring finger protein 214 [Homo sapiens] 31 0.55
gi|116235451 ring finger protein 214 [Homo sapiens] 31 0.55
gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Hom... 30 0.72
gi|41350201 epsin 1 isoform c [Homo sapiens] 30 0.72
gi|194248095 epsin 1 isoform b [Homo sapiens] 30 0.72
gi|194272148 epsin 1 isoform a [Homo sapiens] 30 0.72
gi|41352718 deltex homolog 1 [Homo sapiens] 30 0.72
gi|153792764 hypothetical protein LOC57624 [Homo sapiens] 30 0.94
gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens] 30 0.94
>gi|239741790 PREDICTED: hypothetical protein XP_002342301 [Homo
sapiens]
Length = 164
Score = 364 bits (935), Expect = e-101
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MWAWGEPGPPEGAGHCGTRGSLAWNLHLPPYSINETPEEPTQQTSILDHMCSGPPELPWG 60
MWAWGEPGPPEGAGHCGTRGSLAWNLHLPPYSINETPEEPTQQTSILDHMCSGPPELPWG
Sbjct: 1 MWAWGEPGPPEGAGHCGTRGSLAWNLHLPPYSINETPEEPTQQTSILDHMCSGPPELPWG 60
Query: 61 RTLGSGQCFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPW 120
RTLGSGQCFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPW
Sbjct: 61 RTLGSGQCFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPW 120
Query: 121 AKPWLGLSLLSDPRGAPSFPVSLPHGTPGLWERVEGVIHSAGTA 164
AKPWLGLSLLSDPRGAPSFPVSLPHGTPGLWERVEGVIHSAGTA
Sbjct: 121 AKPWLGLSLLSDPRGAPSFPVSLPHGTPGLWERVEGVIHSAGTA 164
>gi|48476182 roundabout, axon guidance receptor, homolog 3 [Homo
sapiens]
Length = 1386
Score = 39.7 bits (91), Expect = 0.001
Identities = 50/176 (28%), Positives = 64/176 (36%), Gaps = 36/176 (20%)
Query: 4 WGEPGPPEGA-GHCGTRG-------------SLAWNLHLPP------YSINETPEEPTQQ 43
W + PPE + G G +G SL W LPP S E PEE +
Sbjct: 1047 WSQYAPPEWSQGDSGAKGGKVKLLGKPVQMPSLNWPEALPPPPPSCELSCLEGPEEELEG 1106
Query: 44 TSILDHMCSGPPELPW-GRTLGSGQCFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPP 102
+S + C PE SG C +P R P S L P PP
Sbjct: 1107 SSEPEEWCPPMPERSHLTEPSSSGGCLV--TPSRRETPS--PTPSYGQQSTATLTPSPPD 1162
Query: 103 PGQEKKTQPQTH--------GESSPW--AKPWLGLSLLSDPRGAPSFPVSLPHGTP 148
P Q P H G SSP ++P LG+ + P G + P + PH +P
Sbjct: 1163 PPQPPTDMPHLHQMPRRVPLGPSSPLSVSQPMLGIR-EARPAGLGAGPAASPHLSP 1217
>gi|239754993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 38.1 bits (87), Expect = 0.003
Identities = 43/150 (28%), Positives = 56/150 (37%), Gaps = 27/150 (18%)
Query: 13 AGHCGTRGSLAWNLHLPPYSINETPEEPTQQTSILDHMCSGPPELPWGRTLGSGQCFPNN 72
A H R AW+ L P P + H S PP W RT GS Q
Sbjct: 43 ASHRAPRTQRAWSSPLTP--------SPAGTHAGSTHT-SAPPPNFWERTPGSAQPLAFQ 93
Query: 73 SPMHRCLVDIL--PLTLLS----WSSAPILVPLP---PPPGQEKKTQPQTHGESSPWAKP 123
P++ L+ ++ +LLS +P+ +P P PPP P H P
Sbjct: 94 KPLYAYLIFVIGDEPSLLSPFPHTHQSPLAIPSPSASPPP----SCAPAPHSHPPP---- 145
Query: 124 WLGLSLLSDPRGAPSFPVSLPHGTPGLWER 153
+GL+L R P S P LWER
Sbjct: 146 -IGLALACKSRRWPRAQPSRMSPGPPLWER 174
>gi|12669915 E2F transcription factor 4 [Homo sapiens]
Length = 413
Score = 36.2 bits (82), Expect = 0.013
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 80 VDILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPWAKPWLGLSLLSDPRGAPSF 139
+++L + +WSS P+ VP+PPP ++ P P KP L S P+
Sbjct: 190 IEVLLVNKEAWSSPPVAVPVPPP--EDLLQSPSAVSTPPPLPKPALA---QSQEASRPNS 244
Query: 140 PVSLPHGTPGLWERVEGV 157
P P PG E V+G+
Sbjct: 245 PQLTPTAVPGSAE-VQGM 261
>gi|239757093 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 33.1 bits (74), Expect = 0.11
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 35 ETPEEPTQQTSILDHMCSG-PPEL--PWGR-TLGSGQCFPNNSPMHRCLVDILPLT---- 86
E+P P T H +G PPE+ P GR + G CF + H+ L+ P
Sbjct: 73 ESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLG 132
Query: 87 ----LLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPWAK 122
+W S + P P P + +T TH E+S A+
Sbjct: 133 GTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQ 172
>gi|239751599 PREDICTED: hypothetical protein XP_002347926 [Homo
sapiens]
Length = 192
Score = 33.1 bits (74), Expect = 0.11
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 35 ETPEEPTQQTSILDHMCSG-PPEL--PWGR-TLGSGQCFPNNSPMHRCLVDILPLT---- 86
E+P P T H +G PPE+ P GR + G CF + H+ L+ P
Sbjct: 73 ESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLG 132
Query: 87 ----LLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPWAK 122
+W S + P P P + +T TH E+S A+
Sbjct: 133 GTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQ 172
>gi|239746114 PREDICTED: hypothetical protein XP_002344193 [Homo
sapiens]
Length = 192
Score = 33.1 bits (74), Expect = 0.11
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 35 ETPEEPTQQTSILDHMCSG-PPEL--PWGR-TLGSGQCFPNNSPMHRCLVDILPLT---- 86
E+P P T H +G PPE+ P GR + G CF + H+ L+ P
Sbjct: 73 ESPSPPPLPTEKQSHRVAGSPPEVAGPAGRHRVMPGSCFHVSCSKHQALLGNTPSASGLG 132
Query: 87 ----LLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPWAK 122
+W S + P P P + +T TH E+S A+
Sbjct: 133 GTCPASAWPSVRVKGPNPGPLEELARTAFPTHSETSETAQ 172
>gi|154800453 tastin isoform 1 [Homo sapiens]
Length = 778
Score = 32.7 bits (73), Expect = 0.14
Identities = 37/124 (29%), Positives = 45/124 (36%), Gaps = 20/124 (16%)
Query: 6 EPGPPEGAGHCGTRG-----SLAWNLHLP-PYSINETPEEPTQQTSILDHMCSGPPELPW 59
EPGPPE C + SL L +P PY P EP L+ C PE+P
Sbjct: 519 EPGPPEA--FCRSEPEIPEPSLQEQLEVPEPYP----PAEPRP----LESCCRSEPEIPE 568
Query: 60 GRTLGSGQ----CFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHG 115
+ C P I P S + VP P PP + QP T G
Sbjct: 569 SSRQEQLEVPEPCPPAEPRPLESYCRIEPEIPESSRQEQLEVPEPCPPAEPGPLQPSTQG 628
Query: 116 ESSP 119
+S P
Sbjct: 629 QSGP 632
>gi|239742763 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 32.0 bits (71), Expect = 0.25
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 21/115 (18%)
Query: 52 SGPPELPWGRTLGSGQCFPNNSP------MHRCLVDILPLTLLSWSSAPILVPLPPPPGQ 105
S P P GR+L + F SP LP++ WS+ L P P PGQ
Sbjct: 164 SPDPLAPSGRSLRAQLFFLVGSPGPIPASQQPLWTQCLPISWRPWSAHSFLKPSSPGPGQ 223
Query: 106 EKKTQPQ-----THGESSP------WAKPWLGLSLLSDPRGAPSFPVSLPHGTPG 149
+ Q + G S P WA P G + R P V L G+PG
Sbjct: 224 ASRWPLQDELLPSDGISRPQMVSGRWAPPRQGWA----SRRPPQAQVVLKSGSPG 274
>gi|239740974 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 32.0 bits (71), Expect = 0.25
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 21/115 (18%)
Query: 52 SGPPELPWGRTLGSGQCFPNNSP------MHRCLVDILPLTLLSWSSAPILVPLPPPPGQ 105
S P P GR+L + F SP LP++ WS+ L P P PGQ
Sbjct: 164 SPDPLAPSGRSLRAQLFFLVGSPGPIPASQQPLWTQCLPISWRPWSAHSFLKPSSPGPGQ 223
Query: 106 EKKTQPQ-----THGESSP------WAKPWLGLSLLSDPRGAPSFPVSLPHGTPG 149
+ Q + G S P WA P G + R P V L G+PG
Sbjct: 224 ASRWPLQDELLPSDGISRPQMVSGRWAPPRQGWA----SRRPPQAQVVLKSGSPG 274
>gi|13375642 kringle-containing transmembrane protein 2 isoform b
precursor [Homo sapiens]
Length = 420
Score = 32.0 bits (71), Expect = 0.25
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 4 WGEPGPPEGAGHCGTRGSLAWNLHLPP 30
WG PG P AG CGT W PP
Sbjct: 380 WGLPGAPGEAGLCGTNSPEGWPCPAPP 406
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 31.6 bits (70), Expect = 0.32
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 99 LPPPPGQEKKTQPQTHGESSPWAKPWLGLSLLSDPRGAPSFPVSLPHGTPGLWE 152
LP PPG+ + +P T G + P P G ++ P G P P P G PG ++
Sbjct: 488 LPGPPGEGRAGEPGTAGPTGPPGVP--GSPGITGPPGPPGPPG--PPGAPGAFD 537
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sapiens]
Length = 2603
Score = 31.6 bits (70), Expect = 0.32
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 22/115 (19%)
Query: 9 PPEGAGHCGTRGSLAWNLHLPPYSINETPEEPTQQTSILDHMCSGPPE----LPWGRTLG 64
PP + G+ + + N PP S+++ P P QQ+ + PPE +P T
Sbjct: 2092 PPNSSSSSGSSSAHS-NQQQPPGSVSQEPRPPLQQSQV------PPPEVRMTVPPLATSS 2144
Query: 65 SGQCFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHGESSP 119
+ P+ +P+ P+ P P P + +P HG ++P
Sbjct: 2145 APVAVPSTAPV-----------TYPMPQTPMGCPQPTPKMETPAIRPPPHGTTAP 2188
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sapiens]
Length = 2352
Score = 31.6 bits (70), Expect = 0.32
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 22/115 (19%)
Query: 9 PPEGAGHCGTRGSLAWNLHLPPYSINETPEEPTQQTSILDHMCSGPPE----LPWGRTLG 64
PP + G+ + + N PP S+++ P P QQ+ + PPE +P T
Sbjct: 1841 PPNSSSSSGSSSAHS-NQQQPPGSVSQEPRPPLQQSQV------PPPEVRMTVPPLATSS 1893
Query: 65 SGQCFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHGESSP 119
+ P+ +P+ P+ P P P + +P HG ++P
Sbjct: 1894 APVAVPSTAPV-----------TYPMPQTPMGCPQPTPKMETPAIRPPPHGTTAP 1937
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 31.2 bits (69), Expect = 0.42
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 97 VPLPPPPGQEKKTQPQTHGESSPWAKPWLGLSLLSDPRGAPSFPVSLPHG 146
VP+ PPPG E QP T G P P L + + P G P P S P G
Sbjct: 1022 VPVRPPPGPELSAQP-TPG-PVPQVLP-ASLMVSASPAGPPLIPASRPPG 1068
Score = 27.7 bits (60), Expect = 4.6
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 36 TPEEPTQQTSILDHMCSGPPELPWGRTLGSGQCFPNNSPMHRCLVDILPLTLLSWSSAPI 95
T P S L S P +P L S + P+ L +P TL + +SAP+
Sbjct: 1396 TISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPL 1455
Query: 96 LVPLPPP 102
+P+ P
Sbjct: 1456 TIPISAP 1462
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 31.2 bits (69), Expect = 0.42
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 53 GPPELPWGRTLGSGQCFPNNSPMHR---CLVDILPLTLLSWSSAPILVPLPPPPGQEKKT 109
G P+ WG + ++SP+ CL I P P P PG +
Sbjct: 364 GVPQPSWGPEAQAASA--SSSPLEALEACLKGIPPNGSSPSQLPPTSCSQNPQPGDSRSQ 421
Query: 110 QPQ-----THGESSPWAKPWLGLSLLSDPRGAPSFPVSLPHGTP 148
+P+ +H E + +P L L L S R PS P++ P GTP
Sbjct: 422 KPELQPHRSHSEEAT-REPVLPLGLQSCVRDGPSRPLA-PRGTP 463
>gi|169209171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 30.8 bits (68), Expect = 0.55
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 94 PILVPLPPPPGQEKKTQPQTHGESSPWAKPWLGLSLLSDPRGAPSFPVSLPHGTPGL 150
P L PL PPP P H S+P P +L+ G+P P GTP L
Sbjct: 83 PPLHPLLPPP---LAFNPTRHPHSAPQPGPERAPRVLARAEGSPGSKGRSPEGTPSL 136
>gi|239508696 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 30.8 bits (68), Expect = 0.55
Identities = 34/115 (29%), Positives = 42/115 (36%), Gaps = 21/115 (18%)
Query: 52 SGPPELPWGRTLGSGQCFPNNSP------MHRCLVDILPLTLLSWSSAPILVPLPPPPGQ 105
S P P GR+L + F SP LP++ WS L P P PGQ
Sbjct: 164 SPDPLAPSGRSLRAQLFFLVGSPGPIPASQQPLWTQCLPISWWPWSVHSFLKPSSPGPGQ 223
Query: 106 EKKTQPQ-----THGESSP------WAKPWLGLSLLSDPRGAPSFPVSLPHGTPG 149
+ Q + G S P WA P G + R P V L G+PG
Sbjct: 224 ASRWPLQDELLPSDGISRPQMVSGRWAPPRQGWA----SRRPPQAQVVLKSGSPG 274
>gi|94681038 phospholipase D4 [Homo sapiens]
Length = 506
Score = 30.8 bits (68), Expect = 0.55
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 51 CSGPPELPWGRTLGSGQCFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPPPGQ-EKKT 109
CS PP PW R G+ Q + + + L L W VP PP GQ + K
Sbjct: 16 CSMPPRRPWDREAGTLQVL---GALAVLWLGSVALICLLWQ-----VPRPPTWGQVQPKD 67
Query: 110 QPQT--HGESSPW 120
P++ HG S W
Sbjct: 68 VPRSWEHGSSPAW 80
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 30.8 bits (68), Expect = 0.55
Identities = 46/177 (25%), Positives = 58/177 (32%), Gaps = 31/177 (17%)
Query: 8 GPPEGAGHCGTRGSLAWNLHLPPYSINETPEEPTQQTSILDHMCSGPPELPWGRTLGSGQ 67
GP G+G + GS LH P + T + D S PE L +
Sbjct: 737 GPWAGSGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATPEDLLASPLSPSE 796
Query: 68 --CFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPPPGQEKKTQPQT-----HGESSPW 120
P P L +PL L P VP PG +P G P
Sbjct: 797 VAAVPPADPGPEALHPTVPLDL-----PPATVPATTFPGAMGSVKPALDWLTREGGELPE 851
Query: 121 AKPWLG--------LSLLSDPRGA-----PSFPVSLP------HGTPGLWERVEGVI 158
A W G +LLS + P P+ LP + TPGLWE E +
Sbjct: 852 ADEWTGGDAPAFSTSTLLSGDGDSAELEGPPAPLILPSSLDYQYDTPGLWELEEATL 908
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 30.8 bits (68), Expect = 0.55
Identities = 46/177 (25%), Positives = 58/177 (32%), Gaps = 31/177 (17%)
Query: 8 GPPEGAGHCGTRGSLAWNLHLPPYSINETPEEPTQQTSILDHMCSGPPELPWGRTLGSGQ 67
GP G+G + GS LH P + T + D S PE L +
Sbjct: 737 GPWAGSGSISSPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATPEDLLASPLSPSE 796
Query: 68 --CFPNNSPMHRCLVDILPLTLLSWSSAPILVPLPPPPGQEKKTQPQT-----HGESSPW 120
P P L +PL L P VP PG +P G P
Sbjct: 797 VAAVPPADPGPEALHPTVPLDL-----PPATVPATTFPGAMGSVKPALDWLTREGGELPE 851
Query: 121 AKPWLG--------LSLLSDPRGA-----PSFPVSLP------HGTPGLWERVEGVI 158
A W G +LLS + P P+ LP + TPGLWE E +
Sbjct: 852 ADEWTGGDAPAFSTSTLLSGDGDSAELEGPPAPLILPSSLDYQYDTPGLWELEEATL 908
>gi|116235456 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 30.8 bits (68), Expect = 0.55
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 92 SAPILVPLPPPPGQEKKTQPQTHGESSPWAKPWLGLSLLSDPRGAPSFPVSLPHGTPGL 150
S PIL P P Q P +HG +SP GL L P G P + PGL
Sbjct: 485 SFPILNPALSQPSQPSSPLPGSHGRNSP------GLGSLVSPHGPHMPPAASIPPPPGL 537
>gi|116235451 ring finger protein 214 [Homo sapiens]
Length = 703
Score = 30.8 bits (68), Expect = 0.55
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 92 SAPILVPLPPPPGQEKKTQPQTHGESSPWAKPWLGLSLLSDPRGAPSFPVSLPHGTPGL 150
S PIL P P Q P +HG +SP GL L P G P + PGL
Sbjct: 485 SFPILNPALSQPSQPSSPLPGSHGRNSP------GLGSLVSPHGPHMPPAASIPPPPGL 537
>gi|20070193 nuclear receptor subfamily 5, group A, member 1 [Homo
sapiens]
Length = 461
Score = 30.4 bits (67), Expect = 0.72
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 94 PILVPLPPPPGQEKKTQPQTHGESSPWAKPWLGLSLLSDPRGAPSFPVSLP--HG 146
P+ VP PPPP + P HG L D GAP+ P+++P HG
Sbjct: 125 PMGVPPPPPPAPDYVLPPSLHGPEPKGLAAGPPAGPLGD-FGAPALPMAVPGAHG 178
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 30.4 bits (67), Expect = 0.72
Identities = 40/147 (27%), Positives = 51/147 (34%), Gaps = 37/147 (25%)
Query: 17 GTRGSLAWNLHLPPYSINETPEEPTQQTS-----------ILDHMCSGPPELPWGRTLGS 65
G RGSLA + PP + TP PT++T LD + S P P G S
Sbjct: 417 GVRGSLAEAVGSPPPAATPTPTPPTRKTPESFLGPNAALVDLDSLVSRPGPTPPG-AKAS 475
Query: 66 GQCFPNNSPMHRCLV----DILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPWA 121
P P V P L+ + L P+PP PG P T+
Sbjct: 476 NPFLPGGGPATGPSVTNPFQPAPPATLTLNQLR-LSPVPPVPG-----APPTY------- 522
Query: 122 KPWLGLSLLSDPRGAPSFPVSLPHGTP 148
+S G P P +P G P
Sbjct: 523 --------ISPLGGGPGLPPMMPPGPP 541
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 30.4 bits (67), Expect = 0.72
Identities = 40/147 (27%), Positives = 51/147 (34%), Gaps = 37/147 (25%)
Query: 17 GTRGSLAWNLHLPPYSINETPEEPTQQTS-----------ILDHMCSGPPELPWGRTLGS 65
G RGSLA + PP + TP PT++T LD + S P P G S
Sbjct: 443 GVRGSLAEAVGSPPPAATPTPTPPTRKTPESFLGPNAALVDLDSLVSRPGPTPPG-AKAS 501
Query: 66 GQCFPNNSPMHRCLV----DILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPWA 121
P P V P L+ + L P+PP PG P T+
Sbjct: 502 NPFLPGGGPATGPSVTNPFQPAPPATLTLNQLR-LSPVPPVPG-----APPTY------- 548
Query: 122 KPWLGLSLLSDPRGAPSFPVSLPHGTP 148
+S G P P +P G P
Sbjct: 549 --------ISPLGGGPGLPPMMPPGPP 567
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 30.4 bits (67), Expect = 0.72
Identities = 40/147 (27%), Positives = 51/147 (34%), Gaps = 37/147 (25%)
Query: 17 GTRGSLAWNLHLPPYSINETPEEPTQQTS-----------ILDHMCSGPPELPWGRTLGS 65
G RGSLA + PP + TP PT++T LD + S P P G S
Sbjct: 529 GVRGSLAEAVGSPPPAATPTPTPPTRKTPESFLGPNAALVDLDSLVSRPGPTPPG-AKAS 587
Query: 66 GQCFPNNSPMHRCLV----DILPLTLLSWSSAPILVPLPPPPGQEKKTQPQTHGESSPWA 121
P P V P L+ + L P+PP PG P T+
Sbjct: 588 NPFLPGGGPATGPSVTNPFQPAPPATLTLNQLR-LSPVPPVPG-----APPTY------- 634
Query: 122 KPWLGLSLLSDPRGAPSFPVSLPHGTP 148
+S G P P +P G P
Sbjct: 635 --------ISPLGGGPGLPPMMPPGPP 653
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 30.4 bits (67), Expect = 0.72
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 93 APILVPLPPP---PGQEKKTQPQTHGESSPWAKPWLGLSLLSDPRGAPSFPVSLPHG--T 147
AP L P PPP PG T ++ WA P G + + P GAP P G T
Sbjct: 229 APPLPPPPPPGGPPGALAVRPSATFTGAALWAAPAAGPAEPAPPPGAPPRSPGAPGGART 288
Query: 148 PG 149
PG
Sbjct: 289 PG 290
>gi|153792764 hypothetical protein LOC57624 [Homo sapiens]
Length = 653
Score = 30.0 bits (66), Expect = 0.94
Identities = 38/138 (27%), Positives = 52/138 (37%), Gaps = 19/138 (13%)
Query: 26 LHLPPYSINETPEEPTQQTSILDHMCSGPPELPWGRTLGSGQCFPNNSPMHRCLVDILPL 85
+H P S +E+P P + T + + P G S P++ P H L
Sbjct: 344 VHCSPNS-DESPLTPLEVTKLPVLENVSYMKQPAG---ASPSTLPSHVPGHAKLEKEQAA 399
Query: 86 TLLSWSSAPILVPLPPPPGQEKKTQ-----PQTHGESSPWAKPWLGLSLLSDPRGAPSFP 140
L S+ P L PPPP +TQ P++H S L+ LS R P
Sbjct: 400 ALGPASATPALSSSPPPPSTLYRTQSPHGYPKSHSTSPSPVSMGRSLTPLSLKRPPPYDA 459
Query: 141 V----------SLPHGTP 148
V S+PH TP
Sbjct: 460 VHSGSLSRSSPSVPHSTP 477
>gi|169201827 PREDICTED: similar to hCG1798126 [Homo sapiens]
Length = 269
Score = 30.0 bits (66), Expect = 0.94
Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 16 CGTRGSLAWNLHLPPYSINETPEEPTQQTSILDHMCSGPPELPWGRTLGSGQCFPNNSPM 75
C RG+L NL P Y + EP++ + H+ P+ TL CFP
Sbjct: 51 CPQRGALGINLSHPGYCWLVSKREPSRHLPV--HVTPSCARYPFLCTL--PHCFP----- 101
Query: 76 HRCLVDILPLTLLSWSSAPILVPLP---PPPG 104
LP T LS + P L LP P PG
Sbjct: 102 -------LPATSLSCARYPFLCTLPHCFPLPG 126
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.137 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,758,809
Number of Sequences: 37866
Number of extensions: 668168
Number of successful extensions: 3014
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 2771
Number of HSP's gapped (non-prelim): 391
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.