Guide to the Human Genome
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Name: LOC100290107 Sequence: fasta or formatted (192aa) NCBI GI: 239751599
Description:

PREDICTED: hypothetical protein XP_002347926

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         23           2
 C cysteine            3.6          7           2
 D aspartate           1.0          2           1
 E glutamate           4.2          8           2
 F phenylalanine       1.0          2           1
 G glycine             9.9         19           2
 H histidine           4.7          9           1
 I isoleucine          2.1          4           1
 K lysine              3.6          7           1
 L leucine             8.9         17           2
 M methionine          2.6          5           1
 N asparagine          2.1          4           1
 P proline            13.5         26           3
 Q glutamine           3.1          6           1
 R arginine            5.2         10           1
 S serine              9.4         18           1
 T threonine           7.8         15           2
 V valine              3.6          7           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347926 
LOC100292544          1.000   PREDICTED: hypothetical protein 
LOC100287367          1.000   PREDICTED: hypothetical protein XP_002344193 
CLCN1                 0.037   chloride channel 1, skeletal muscle 
GRIN2D                0.029   N-methyl-D-aspartate receptor subunit 2D precursor ...
DPH2                  0.029   diphthamide biosynthesis protein 2 isoform a 
SCARF2                0.026   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.026   scavenger receptor class F, member 2 isoform 2 [Homo...
BAHCC1                0.024   BAH domain and coiled-coil containing 1 
SNAPC4                0.024   small nuclear RNA activating complex, polypeptide 4,...
GRID2IP               0.024   glutamate receptor, ionotropic, delta 2 (Grid2) int...
LOC100288568          0.021   PREDICTED: hypothetical protein XP_002343338 
SHANK3                0.021   SH3 and multiple ankyrin repeat domains 3 
ARRDC1                0.021   arrestin domain containing 1 
HOXA5                 0.021   homeobox A5 
LOC100289256          0.021   PREDICTED: hypothetical protein XP_002342301 
HIVEP3                0.021   human immunodeficiency virus type I enhancer bindin...
DLGAP2                0.021   discs large-associated protein 2 
LMTK3                 0.021   lemur tyrosine kinase 3 
SYT3                  0.018   synaptotagmin III 
SYT3                  0.018   synaptotagmin III 
SYT3                  0.018   synaptotagmin III 
C15orf39              0.018   hypothetical protein LOC56905 
SBF1                  0.018   SET binding factor 1 
LOC100293319          0.018   PREDICTED: hypothetical protein 
LOC100291551          0.018   PREDICTED: hypothetical protein XP_002346445 
ZNF521                0.018   zinc finger protein 521 
SASH1                 0.018   SAM and SH3 domain containing 1 
DMRTA2                0.018   DMRT-like family A2 
RERE                  0.018   atrophin-1 like protein isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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