Guide to the Human Genome
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Name: PLD4 Sequence: fasta or formatted (506aa) NCBI GI: 94681038
Description:

phospholipase D4

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         49           3
 C cysteine            1.4          7           1
 D aspartate           4.0         20           1
 E glutamate           3.4         17           1
 F phenylalanine       3.6         18           1
 G glycine             7.1         36           1
 H histidine           2.2         11           1
 I isoleucine          2.0         10           1
 K lysine              2.6         13           1
 L leucine            10.7         54           2
 M methionine          1.8          9           1
 N asparagine          2.8         14           1
 P proline             7.9         40           2
 Q glutamine           6.7         34           2
 R arginine            5.5         28           2
 S serine              8.7         44           3
 T threonine           5.1         26           2
 V valine              8.9         45           2
 W tryptophan          3.6         18           1
 Y tyrosine            2.6         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipase D4 
PLD3                  0.370   phospholipase D3 
PLD3                  0.370   phospholipase D3 
PLD5                  0.225   phospholipase D5 
PLD6                  0.011   phospholipase D6 
KTN1                  0.008   kinectin 1 isoform b 
KTN1                  0.008   kinectin 1 isoform a 
KTN1                  0.008   kinectin 1 isoform c 
KTN1                  0.008   kinectin 1 isoform a 
ZNF496                0.008   zinc finger protein 496 
LOC100134663          0.007   PREDICTED: hypothetical protein, partial 
LOC100293408          0.007   PREDICTED: hypothetical protein 
LOC100289362          0.007   PREDICTED: hypothetical protein 
LOC100289362          0.007   PREDICTED: hypothetical protein XP_002343719 
FAM83F                0.007   hypothetical protein LOC113828 
LOC100293225          0.006   PREDICTED: hypothetical protein 
LOC100289718          0.006   PREDICTED: hypothetical protein XP_002346986 
LOC100288700          0.006   PREDICTED: hypothetical protein XP_002342828 
LOC100289256          0.006   PREDICTED: hypothetical protein XP_002342301 
LOC100288700          0.006   PREDICTED: hypothetical protein 
LOC100294448          0.005   PREDICTED: hypothetical protein 
PELI3                 0.005   pellino 3 alpha isoform 2 
PELI3                 0.005   pellino 3 alpha isoform 1 
GPR37L1               0.005   G-protein coupled receptor 37 like 1 
LOC728477             0.005   PREDICTED: similar to hCG27445 
TRPM5                 0.005   transient receptor potential cation channel, subfami...
LOC730032             0.004   PREDICTED: similar to Rho guanine nucleotide exchan...
SIM2                  0.004   single-minded homolog 2 long isoform 
BIRC6                 0.004   baculoviral IAP repeat-containing 6 
PTPRN                 0.004   protein tyrosine phosphatase, receptor type, N precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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