Guide to the Human Genome
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Name: LOC100130097 Sequence: fasta or formatted (372aa) NCBI GI: 239741525
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {609aa} PREDICTED: similar to Kinesin-Like Protein family member (klp-6)
alt prot {383aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         25           2
 C cysteine            1.6          6           1
 D aspartate           4.0         15           1
 E glutamate           7.0         26           2
 F phenylalanine       3.0         11           1
 G glycine             5.4         20           1
 H histidine           1.6          6           1
 I isoleucine          4.3         16           1
 K lysine              4.8         18           2
 L leucine            13.4         50           3
 M methionine          3.0         11           1
 N asparagine          3.0         11           1
 P proline             6.7         25           2
 Q glutamine           6.7         25           2
 R arginine            5.1         19           2
 S serine              8.1         30           2
 T threonine           7.0         26           2
 V valine              5.4         20           2
 W tryptophan          1.1          4           1
 Y tyrosine            2.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130097          0.983   PREDICTED: hypothetical protein 
LOC100130097          0.968   PREDICTED: similar to Kinesin-Like Protein family m...
LOC100134663          0.014   PREDICTED: hypothetical protein, partial 
WNK2                  0.011   WNK lysine deficient protein kinase 2 
ELL2                  0.011   elongation factor, RNA polymerase II, 2 
FMNL1                 0.011   formin-like 1 
UACA                  0.010   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.010   uveal autoantigen with coiled-coil domains and ankyr...
TLN2                  0.010   talin 2 
TRRAP                 0.010   transformation/transcription domain-associated protei...
BRPF3                 0.010   bromodomain and PHD finger containing, 3 
TRIM75                0.010   tripartite motif-containing 75 
MUC2                  0.010   mucin 2 precursor 
GPC1                  0.010   glypican 1 precursor 
CCDC88C               0.010   DVL-binding protein DAPLE 
KIAA0090              0.010   hypothetical protein LOC23065 
IGF2BP1               0.008   insulin-like growth factor 2 mRNA binding protein 1...
LOC388780             0.008   PREDICTED: hypothetical protein 
LOC100292909          0.008   PREDICTED: hypothetical protein 
IGF2BP1               0.008   insulin-like growth factor 2 mRNA binding protein 1 ...
SIX5                  0.008   sine oculis homeobox homolog 5 
SORBS1                0.008   sorbin and SH3 domain containing 1 isoform 3 
LAMA3                 0.008   laminin alpha 3 subunit isoform 1 
LAMA3                 0.008   laminin alpha 3 subunit isoform 4 
LAMA3                 0.008   laminin alpha 3 subunit isoform 3 
LAMA3                 0.008   laminin alpha 3 subunit isoform 2 
C19orf54              0.008   hypothetical protein LOC284325 
PDCD6IP               0.007   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.007   programmed cell death 6 interacting protein isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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