Guide to the Human Genome
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Name: C19orf54 Sequence: fasta or formatted (351aa) NCBI GI: 167234405
Description:

hypothetical protein LOC284325

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         23           2
 C cysteine            2.3          8           1
 D aspartate           4.6         16           1
 E glutamate           4.3         15           2
 F phenylalanine       2.6          9           1
 G glycine             9.1         32           2
 H histidine           2.8         10           1
 I isoleucine          1.7          6           1
 K lysine              4.0         14           1
 L leucine            13.7         48           3
 M methionine          1.1          4           1
 N asparagine          0.9          3           1
 P proline            14.8         52           4
 Q glutamine           5.1         18           2
 R arginine            4.8         17           1
 S serine              7.4         26           2
 T threonine           3.7         13           1
 V valine              6.8         24           2
 W tryptophan          1.7          6           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC284325 
PRR12                 0.055   proline rich 12 
WASF2                 0.052   WAS protein family, member 2 
FMN2                  0.043   formin 2 
FMN1                  0.043   formin 1 
RAPH1                 0.042   Ras association and pleckstrin homology domains 1 is...
C6orf132              0.042   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.042   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.042   PREDICTED: hypothetical protein LOC647024 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
LOC645529             0.041   PREDICTED: similar to Putative acrosin-like proteas...
ENAH                  0.039   enabled homolog isoform a 
ENAH                  0.039   enabled homolog isoform b 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.038   PREDICTED: hypothetical protein LOC80164 
FMNL2                 0.038   formin-like 2 
FMNL1                 0.038   formin-like 1 
MLL4                  0.038   myeloid/lymphoid or mixed-lineage leukemia 4 
WAS                   0.036   Wiskott-Aldrich syndrome protein 
ESX1                  0.036   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
CPSF6                 0.035   cleavage and polyadenylation specific factor 6, 68 ...
ZFHX4                 0.035   zinc finger homeodomain 4 
WIPF3                 0.035   WAS/WASL interacting protein family, member 3 [Homo...
SAMD1                 0.035   sterile alpha motif domain containing 1 
LOC100291797          0.035   PREDICTED: hypothetical protein XP_002345651 
LOC100291443          0.035   PREDICTED: hypothetical protein XP_002346504 
LOC100289394          0.035   PREDICTED: hypothetical protein XP_002342316 
MLL2                  0.035   myeloid/lymphoid or mixed-lineage leukemia 2 
DIAPH2                0.035   diaphanous 2 isoform 12C 
DIAPH2                0.035   diaphanous 2 isoform 156 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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