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Search of human proteins with 239741520
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741520 PREDICTED: hypothetical protein XP_002342220 [Homo
sapiens]
(96 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741520 PREDICTED: hypothetical protein XP_002342220 [Homo ... 199 4e-52
gi|239753089 PREDICTED: hypothetical protein [Homo sapiens] 192 5e-50
gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo ... 190 2e-49
gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Ho... 38 0.002
gi|169168296 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|169168044 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|169167512 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|13899269 SRY-box 7 [Homo sapiens] 34 0.029
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.038
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 33 0.038
gi|41352718 deltex homolog 1 [Homo sapiens] 33 0.064
gi|239757363 PREDICTED: hypothetical protein isoform 1 [Homo sap... 32 0.084
gi|239751921 PREDICTED: hypothetical protein isoform 1 [Homo sap... 32 0.084
gi|239746411 PREDICTED: hypothetical protein XP_002343707 isofor... 32 0.084
gi|59806357 submaxillary gland androgen regulated protein 3 homo... 32 0.084
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 32 0.14
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 32 0.14
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 32 0.14
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 32 0.14
gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo ... 32 0.14
gi|239752186 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo ... 32 0.14
gi|38194229 kelch-like 17 [Homo sapiens] 32 0.14
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.19
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 31 0.19
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 30 0.32
gi|169194607 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|169201944 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
gi|169192119 PREDICTED: hypothetical protein [Homo sapiens] 30 0.32
>gi|239741520 PREDICTED: hypothetical protein XP_002342220 [Homo
sapiens]
Length = 96
Score = 199 bits (506), Expect = 4e-52
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY 60
MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY
Sbjct: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY 60
Query: 61 LRNSQQPSPTTFKSVFVVVTVHTEKLAPHPQSARGL 96
LRNSQQPSPTTFKSVFVVVTVHTEKLAPHPQSARGL
Sbjct: 61 LRNSQQPSPTTFKSVFVVVTVHTEKLAPHPQSARGL 96
>gi|239753089 PREDICTED: hypothetical protein [Homo sapiens]
Length = 204
Score = 192 bits (488), Expect = 5e-50
Identities = 92/94 (97%), Positives = 92/94 (97%)
Query: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY 60
MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY
Sbjct: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY 60
Query: 61 LRNSQQPSPTTFKSVFVVVTVHTEKLAPHPQSAR 94
LRNSQQPSPTTFKSVFVVVTVHTEKLAPHPQ R
Sbjct: 61 LRNSQQPSPTTFKSVFVVVTVHTEKLAPHPQKGR 94
>gi|239747651 PREDICTED: hypothetical protein XP_002348127 [Homo
sapiens]
Length = 324
Score = 190 bits (483), Expect = 2e-49
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY 60
MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY
Sbjct: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGY 60
Query: 61 LRNSQQPSPTTFKSVFVVVTVHTEKLAPHPQ 91
LRNSQQPSPTTFKSVFVVVTVHTEKLAPHPQ
Sbjct: 61 LRNSQQPSPTTFKSVFVVVTVHTEKLAPHPQ 91
>gi|22091448 GDNF family receptor alpha 4 isoform b precursor [Homo
sapiens]
Length = 299
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/58 (39%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 1 MCTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASP 58
+C AR AAG R SPAH P +AS P G + RPR R+P P P
Sbjct: 129 VCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLVHPSAQRPR--RLPAGPGRP 184
>gi|169168296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 5 ARDAAGRSESAPRSRSPAH--GPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLR 62
AR+A+ PRS+ P GPAR R S P A PR +R P P
Sbjct: 270 AREASTSPALTPRSQYPKRPQGPARNRGSCSPPLSVTLAVTEGPR-LRKPSAPE-----E 323
Query: 63 NSQQPSPT 70
N+ PSPT
Sbjct: 324 NTSAPSPT 331
>gi|169168044 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 5 ARDAAGRSESAPRSRSPAH--GPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLR 62
AR+A+ PRS+ P GPAR R S P A PR +R P P
Sbjct: 270 AREASTSPALTPRSQYPKRPQGPARNRGSCSPPLSVTLAVTEGPR-LRKPSAPE-----E 323
Query: 63 NSQQPSPT 70
N+ PSPT
Sbjct: 324 NTSAPSPT 331
>gi|169167512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 442
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 5 ARDAAGRSESAPRSRSPAH--GPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLR 62
AR+A+ PRS+ P GPAR R S P A PR +R P P
Sbjct: 353 AREASTSPALTPRSQYPKRPQGPARNRGSCSPPLSVTLAVTEGPR-LRKPSAPE-----E 406
Query: 63 NSQQPSPT 70
N+ PSPT
Sbjct: 407 NTSAPSPT 414
>gi|13899269 SRY-box 7 [Homo sapiens]
Length = 388
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 20 SPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSPTTFKSVFVVV 79
SP + P+ S P A + + VPGCP SP Y SP T+ + +
Sbjct: 243 SPEYAPSPLHCSHPLGSLALGQSPGVSMMSPVPGCPPSPAYY------SPATYHPLHSNL 296
Query: 80 TVHTEKLAPHPQ 91
H +L+P P+
Sbjct: 297 QAHLGQLSPPPE 308
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 TWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPAS 57
T A ++ S S+ S S A + + +SSPP A S PRV+ +PG PA+
Sbjct: 82 TAASSSSSSSSSSSSSSSSASSSSSSSSSSPPP--ASPPASSPPRVLELPGVPAA 134
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 3 TWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPAS 57
T A ++ S S+ S S A + + +SSPP A S PRV+ +PG PA+
Sbjct: 82 TAASSSSSSSSSSSSSSSSASSSSSSSSSSPPP--ASPPASSPPRVLELPGVPAA 134
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 32.7 bits (73), Expect = 0.064
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 4 WARDAAGRSESAPRSRSPAHGPARTRASSPP------QEGAERATRSRPRVIRVPGCPAS 57
WA AAG +E AP +P P + P + G +R T R PG PA
Sbjct: 259 WAAPAAGPAEPAPPPGAPPRSPGAPGGARTPGQNNLNRPGPQRTTSVSARASIPPGVPAL 318
Query: 58 P 58
P
Sbjct: 319 P 319
>gi|239757363 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 169
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 2 CTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGC 54
C+ R ++ S S+P+ PA GP T+++ P G RA RS+ GC
Sbjct: 5 CSLGRISSRLSRSSPKVTEPAPGPVHTKSALP---GCARARRSKASTKVSGGC 54
>gi|239751921 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 169
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 2 CTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGC 54
C+ R ++ S S+P+ PA GP T+++ P G RA RS+ GC
Sbjct: 5 CSLGRISSRLSRSSPKVTEPAPGPVHTKSALP---GCARARRSKASTKVSGGC 54
>gi|239746411 PREDICTED: hypothetical protein XP_002343707 isoform
1 [Homo sapiens]
Length = 169
Score = 32.3 bits (72), Expect = 0.084
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 2 CTWARDAAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGC 54
C+ R ++ S S+P+ PA GP T+++ P G RA RS+ GC
Sbjct: 5 CSLGRISSRLSRSSPKVTEPAPGPVHTKSALP---GCARARRSKASTKVSGGC 54
>gi|59806357 submaxillary gland androgen regulated protein 3 homolog
A precursor [Homo sapiens]
Length = 134
Score = 32.3 bits (72), Expect = 0.084
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 16 PRSRSPAHGPARTRASSPPQEGAER-ATRSRPRVIRVPGCPASPGYLRNSQQPSPTTFKS 74
P SP +GP R S PP G R + S P P PGY + QP P
Sbjct: 64 PPPLSPPYGPGRIPPSPPPPYGPGRIQSHSLPP-------PYGPGYPQPPSQPRPYPPGP 116
Query: 75 VFVVVTVHTEKLAPHP 90
F V T+ P P
Sbjct: 117 PFFPVNSPTDPALPTP 132
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 13 ESAPRS-RSPAHGPARTRASSP--PQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSP 69
E AP + + PA P T+ SP P+E A T+S P + P + ++PSP
Sbjct: 363 EPAPTTPKEPA--PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSP 420
Query: 70 TTFK 73
TT K
Sbjct: 421 TTTK 424
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 3 TWARDAAGRSE----SAPRSRSPAHGPARTR------------ASSPPQEGAERATRSRP 46
T A+D A S+ P++ + GPA T AS+ P+E +S P
Sbjct: 182 TSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAP 241
Query: 47 RVIRVPGCPASPGYLRNSQQPSPTTFK 73
+ P + ++P+PTT K
Sbjct: 242 TTPKEPAPTTTKSAPTTPKEPAPTTTK 268
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 13 ESAPRS-RSPAHGPARTRASSP--PQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSP 69
E AP + + PA P T+ SP P+E A T+S P + P + ++PSP
Sbjct: 404 EPAPTTPKEPA--PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSP 461
Query: 70 TTFK 73
TT K
Sbjct: 462 TTTK 465
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 3 TWARDAAGRSE----SAPRSRSPAHGPARTR------------ASSPPQEGAERATRSRP 46
T A+D A S+ P++ + GPA T AS+ P+E +S P
Sbjct: 223 TSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAP 282
Query: 47 RVIRVPGCPASPGYLRNSQQPSPTTFK 73
+ P + ++P+PTT K
Sbjct: 283 TTPKEPAPTTTKSAPTTPKEPAPTTTK 309
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 13 ESAPRS-RSPAHGPARTRASSP--PQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSP 69
E AP + + PA P T+ SP P+E A T+S P + P + ++PSP
Sbjct: 456 EPAPTTPKEPA--PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSP 513
Query: 70 TTFK 73
TT K
Sbjct: 514 TTTK 517
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 3 TWARDAAGRSE----SAPRSRSPAHGPARTR------------ASSPPQEGAERATRSRP 46
T A+D A S+ P++ + GPA T AS+ P+E +S P
Sbjct: 275 TSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAP 334
Query: 47 RVIRVPGCPASPGYLRNSQQPSPTTFK 73
+ P + ++P+PTT K
Sbjct: 335 TTPKEPAPTTTKSAPTTPKEPAPTTTK 361
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 13 ESAPRS-RSPAHGPARTRASSP--PQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSP 69
E AP + + PA P T+ SP P+E A T+S P + P + ++PSP
Sbjct: 497 EPAPTTPKEPA--PTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSP 554
Query: 70 TTFK 73
TT K
Sbjct: 555 TTTK 558
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Query: 3 TWARDAAGRSE----SAPRSRSPAHGPARTR------------ASSPPQEGAERATRSRP 46
T A+D A S+ P++ + GPA T AS+ P+E +S P
Sbjct: 316 TSAKDLAPTSKVLAKPTPKAETTTKGPALTTPKEPTPTTPKEPASTTPKEPTPTTIKSAP 375
Query: 47 RVIRVPGCPASPGYLRNSQQPSPTTFK 73
+ P + ++P+PTT K
Sbjct: 376 TTPKEPAPTTTKSAPTTPKEPAPTTTK 402
>gi|239757701 PREDICTED: hypothetical protein XP_002345525 [Homo
sapiens]
Length = 180
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 21 PAHGPARTRASSPPQEGAERATRSR----PRVIRVPGCPASPGYLRNSQQPSP 69
PA G AR R SP G+ R S+ P ++ GCPA PG R Q+ P
Sbjct: 37 PAGGWARAREVSP---GSGRTACSQCGPTPPALQAAGCPAPPGTGRGPQRSPP 86
>gi|239752186 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 21 PAHGPARTRASSPPQEGAERATRSR----PRVIRVPGCPASPGYLRNSQQPSP 69
PA G AR R SP G+ R S+ P ++ GCPA PG R Q+ P
Sbjct: 37 PAGGWARAREVSP---GSGRTACSQCGPTPPALQAAGCPAPPGTGRGPQRSPP 86
>gi|239746709 PREDICTED: hypothetical protein XP_002343816 [Homo
sapiens]
Length = 180
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 21 PAHGPARTRASSPPQEGAERATRSR----PRVIRVPGCPASPGYLRNSQQPSP 69
PA G AR R SP G+ R S+ P ++ GCPA PG R Q+ P
Sbjct: 37 PAGGWARAREVSP---GSGRTACSQCGPTPPALQAAGCPAPPGTGRGPQRSPP 86
>gi|38194229 kelch-like 17 [Homo sapiens]
Length = 642
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 9 AGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASP 58
AGR++S P SP GP PPQ A A R+RPR R PA+P
Sbjct: 9 AGRTQS-PEHGSPGPGP-EAPPPPPPQPPAPEAERTRPRQAR----PAAP 52
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 13 ESAPRS--RSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSP 69
ESAPR+ A +R AS PP G R R+ P PG +SPG + +P P
Sbjct: 72 ESAPRAGPTRSAGTSSRNPASRPPASG--RGERAPPAKNTSPGPVSSPGRASGTTRPGP 128
Score = 25.8 bits (55), Expect = 7.8
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 8 AAGRSESAPRSRSPAHGPART--RASSPPQEG---------AERATRSRPRVIRVPGCPA 56
A+GR E AP +++ + GP + RAS + G + T +R + P A
Sbjct: 96 ASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSA 155
Query: 57 -SPGYLRNSQQPSPTT 71
S G R++ P+P T
Sbjct: 156 LSAGARRDTSGPTPGT 171
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 13 ESAPRS--RSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSP 69
ESAPR+ A +R AS PP G R R+ P PG +SPG + +P P
Sbjct: 72 ESAPRAGPTRSAGTSSRNPASRPPASG--RGERAPPAKNTSPGPVSSPGRASGTTRPGP 128
Score = 25.8 bits (55), Expect = 7.8
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 8 AAGRSESAPRSRSPAHGPART--RASSPPQEG---------AERATRSRPRVIRVPGCPA 56
A+GR E AP +++ + GP + RAS + G + T +R + P A
Sbjct: 96 ASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSA 155
Query: 57 -SPGYLRNSQQPSPTT 71
S G R++ P+P T
Sbjct: 156 LSAGARRDTSGPTPGT 171
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 15 APRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLRNSQQP 67
APR + A AS + A A RSRPR++R P P R S P
Sbjct: 160 APRQAAQAADTGPRHASPGARRPAPGARRSRPRLLRPASPPPRPAPRRRSTAP 212
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 8 AAGRSESAPRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLRNS 64
++GRS PR GPAR+ + + G R S P V P P GY R S
Sbjct: 2360 SSGRS---PRMERRVPGPARSESPRACRHGGARWPASGPHVSEGPPGPRHHGYYRGS 2413
>gi|169194607 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 15 APRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSPTTFKS 74
+PR+++ AH P + S P + +RSR C SPG R +++P ++
Sbjct: 121 SPRAKAHAHAPTHSLLSIP----GAKTSRSR--------CSPSPGRSRLARRPLAHLIQA 168
Query: 75 VFVVVTVH----TEKLAPHPQSARG 95
V + +H T L H + +RG
Sbjct: 169 VDFLGGIHDFSATGALGVHDRGSRG 193
>gi|169201944 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 15 APRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSPTTFKS 74
+PR+++ AH P + S P + +RSR C SPG R +++P ++
Sbjct: 121 SPRAKAHAHAPTHSLLSIP----GAKTSRSR--------CSPSPGRSRLARRPLAHLIQA 168
Query: 75 VFVVVTVH----TEKLAPHPQSARG 95
V + +H T L H + +RG
Sbjct: 169 VDFLGGIHDFSATGALGVHDRGSRG 193
>gi|169192119 PREDICTED: hypothetical protein [Homo sapiens]
Length = 436
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 15 APRSRSPAHGPARTRASSPPQEGAERATRSRPRVIRVPGCPASPGYLRNSQQPSPTTFKS 74
+PR+++ AH P + S P + +RSR C SPG R +++P ++
Sbjct: 121 SPRAKAHAHAPTHSLLSIP----GAKTSRSR--------CSPSPGRSRLARRPLAHLIQA 168
Query: 75 VFVVVTVH----TEKLAPHPQSARG 95
V + +H T L H + +RG
Sbjct: 169 VDFLGGIHDFSATGALGVHDRGSRG 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.126 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,718,434
Number of Sequences: 37866
Number of extensions: 248449
Number of successful extensions: 2393
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 188
Number of HSP's that attempted gapping in prelim test: 2128
Number of HSP's gapped (non-prelim): 457
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.