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Search of human proteins with 239741460
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741460 PREDICTED: hypothetical protein XP_002342225 [Homo
sapiens]
(98 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747595 PREDICTED: hypothetical protein XP_002347777 [Homo ... 211 1e-55
gi|239741460 PREDICTED: hypothetical protein XP_002342225 [Homo ... 211 1e-55
gi|239751818 PREDICTED: hypothetical protein XP_002348008 [Homo ... 40 5e-04
gi|239746309 PREDICTED: hypothetical protein XP_002343728 [Homo ... 40 5e-04
gi|169204928 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
gi|113423861 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ... 33 0.064
gi|113423437 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
gi|222080060 Smith-Magenis syndrome chromosome region, candidate... 32 0.083
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 32 0.11
gi|239753353 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens] 31 0.19
gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo ... 31 0.19
gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens] 31 0.19
gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo ... 31 0.19
gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransfer... 30 0.32
gi|150170699 kinesin family member 26A [Homo sapiens] 30 0.32
gi|239757144 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239751663 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239746169 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239750123 PREDICTED: hypothetical protein XP_002347295 [Homo ... 30 0.54
gi|5031887 LIM domain containing preferred translocation partner... 30 0.54
gi|146134388 YLP motif containing 1 [Homo sapiens] 30 0.54
gi|157415950 hypothetical protein LOC199800 [Homo sapiens] 30 0.54
gi|66932999 testis-specific protein kinase 1 [Homo sapiens] 29 0.70
gi|207452735 epiplakin 1 [Homo sapiens] 29 0.70
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 29 0.70
gi|91208420 bassoon protein [Homo sapiens] 29 0.92
gi|224548950 hypothetical protein LOC644844 [Homo sapiens] 29 0.92
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 29 0.92
>gi|239747595 PREDICTED: hypothetical protein XP_002347777 [Homo
sapiens]
Length = 98
Score = 211 bits (537), Expect = 1e-55
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MNRSFFLDGDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKC 60
MNRSFFLDGDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKC
Sbjct: 1 MNRSFFLDGDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKC 60
Query: 61 GPGPLGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSAEA 98
GPGPLGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSAEA
Sbjct: 61 GPGPLGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSAEA 98
>gi|239741460 PREDICTED: hypothetical protein XP_002342225 [Homo
sapiens]
Length = 98
Score = 211 bits (537), Expect = 1e-55
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 1 MNRSFFLDGDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKC 60
MNRSFFLDGDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKC
Sbjct: 1 MNRSFFLDGDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKC 60
Query: 61 GPGPLGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSAEA 98
GPGPLGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSAEA
Sbjct: 61 GPGPLGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSAEA 98
>gi|239751818 PREDICTED: hypothetical protein XP_002348008 [Homo
sapiens]
Length = 195
Score = 39.7 bits (91), Expect = 5e-04
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 9 GDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLW-------GTAPREWGKCG 61
G PGL G VL G GV L +LG G L G +P WG+CG
Sbjct: 54 GSPGLIPHKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECG 113
Query: 62 PGPLGPP 68
PG G P
Sbjct: 114 PGRGGSP 120
>gi|239746309 PREDICTED: hypothetical protein XP_002343728 [Homo
sapiens]
Length = 195
Score = 39.7 bits (91), Expect = 5e-04
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 9 GDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLW-------GTAPREWGKCG 61
G PGL G VL G GV L +LG G L G +P WG+CG
Sbjct: 54 GSPGLIPHKSPGPVLPGEGVQGVVLPLLRALQLGPPKGANLGVGGDLEEGESPASWGECG 113
Query: 62 PGPLGPP 68
PG G P
Sbjct: 114 PGRGGSP 120
>gi|169204928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.064
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
Query: 12 GLSGESQRGRVLEGSLAAG----------VRCGLKSEQELGAALGDRLWGTA---PREWG 58
G+S QRG + ++G VR G+ +E GAA WG A PR+
Sbjct: 9 GVSSLPQRGSEPRSTFSSGACVTARDRRRVRFGVGAETRRGAAQMSADWGFALICPRQ-- 66
Query: 59 KCGPGPLGPPRQQSAGPWEGRCPPAVKGG 87
+ P P R + GPW G P AV+ G
Sbjct: 67 ERSPSP---SRWLAPGPWRGMGPGAVREG 92
>gi|113423861 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.064
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
Query: 12 GLSGESQRGRVLEGSLAAG----------VRCGLKSEQELGAALGDRLWGTA---PREWG 58
G+S QRG + ++G VR G+ +E GAA WG A PR+
Sbjct: 9 GVSSLPQRGSEPRSTFSSGACVTARDRRRVRFGVGAETRRGAAQMSADWGFALICPRQ-- 66
Query: 59 KCGPGPLGPPRQQSAGPWEGRCPPAVKGG 87
+ P P R + GPW G P AV+ G
Sbjct: 67 ERSPSP---SRWLAPGPWRGMGPGAVREG 92
>gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo
sapiens]
Length = 230
Score = 32.7 bits (73), Expect = 0.064
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 48 RLWGTAPREWGKCGPGPLGPPRQQSAGPWEGRCPPAVK----GGGPSRVRPSAEA 98
R WG+ G GP PP SAGP PP ++ GGG RV P+ A
Sbjct: 51 RRWGSLGTNGSLTGRGPGSPPLPPSAGP---APPPGLREAWVGGGGGRVSPAPGA 102
>gi|113423437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.064
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
Query: 12 GLSGESQRGRVLEGSLAAG----------VRCGLKSEQELGAALGDRLWGTA---PREWG 58
G+S QRG + ++G VR G+ +E GAA WG A PR+
Sbjct: 9 GVSSLPQRGSEPRSTFSSGACVTARDRRRVRFGVGAETRRGAAQMSADWGFALICPRQ-- 66
Query: 59 KCGPGPLGPPRQQSAGPWEGRCPPAVKGG 87
+ P P R + GPW G P AV+ G
Sbjct: 67 ERSPSP---SRWLAPGPWRGMGPGAVREG 92
>gi|222080060 Smith-Magenis syndrome chromosome region, candidate 7
isoform 3 [Homo sapiens]
Length = 205
Score = 32.3 bits (72), Expect = 0.083
Identities = 27/68 (39%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 34 GLKSEQELGAAL-GDRLWGTAPRE--WGKCGPGPLGPPRQQSAGPWEGRCPPAVKGGGPS 90
GL SEQ G AL G R WG A R G CGP AGP E G GPS
Sbjct: 137 GLLSEQVPGTALWGIRAWGAALRRAAGGGCGPCASPGATGAGAGPVEPGAGRGHCGEGPS 196
Query: 91 RVRPSAEA 98
+ + +A
Sbjct: 197 LLGRAQDA 204
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 32.0 bits (71), Expect = 0.11
Identities = 29/87 (33%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 8 DGDPGLSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKCGPGPLGP 67
DG+PGL G L G L CG E A G + G PG G
Sbjct: 986 DGEPGLRGSPG----LPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRGD 1041
Query: 68 PRQQSAGPWEGRCPPAVKGGGPSRVRP 94
P AGP PP KG SR P
Sbjct: 1042 PGIGVAGPPGPSGPPGDKGSPGSRGLP 1068
>gi|239753353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 448
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 12 GLSGESQRGRVLEGSLAA-----------GVRCGLKSEQELGAALGDRLWGTAPREWGKC 60
GLSG QR R L+ L A +RCG QE GA G G G C
Sbjct: 160 GLSGVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAETGGEAQGGEALAPGCC 219
Query: 61 GPG 63
G
Sbjct: 220 SEG 222
>gi|239751558 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 10 DPGLSG-----ESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKCGPGP 64
DP LS + + R+L S AAGVR L++ A L + G AP +
Sbjct: 117 DPSLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGF------- 169
Query: 65 LGPPRQQSAGPWEGRCPPAVKGGG---PSRVRPSAEA 98
+ P E R P + G PS RP A
Sbjct: 170 ------KGTAPAEARGPGGRRFSGLLTPSAARPDPPA 200
>gi|239747921 PREDICTED: hypothetical protein XP_002346480 [Homo
sapiens]
Length = 448
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 12 GLSGESQRGRVLEGSLAA-----------GVRCGLKSEQELGAALGDRLWGTAPREWGKC 60
GLSG QR R L+ L A +RCG QE GA G G G C
Sbjct: 160 GLSGVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAETGGEAQGGEALAPGCC 219
Query: 61 GPG 63
G
Sbjct: 220 SEG 222
>gi|169212818 PREDICTED: similar to hCG1790759 [Homo sapiens]
Length = 771
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 21/97 (21%)
Query: 10 DPGLSG-----ESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKCGPGP 64
DP LS + + R+L S AAGVR L++ A L + G AP +
Sbjct: 117 DPSLSSSFSNFQEKTARILASSFAAGVRRSLRARASPAAPLSESRGGAAPAGF------- 169
Query: 65 LGPPRQQSAGPWEGRCPPAVKGGG---PSRVRPSAEA 98
+ P E R P + G PS RP A
Sbjct: 170 ------KGTAPAEARGPGGRRFSGLLTPSAARPDPPA 200
>gi|239741815 PREDICTED: hypothetical protein XP_002342320 [Homo
sapiens]
Length = 448
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/63 (34%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 12 GLSGESQRGRVLEGSLAA-----------GVRCGLKSEQELGAALGDRLWGTAPREWGKC 60
GLSG QR R L+ L A +RCG QE GA G G G C
Sbjct: 160 GLSGVQQRRRGLQPELPAPLPPLPGPPPPAIRCGTPKSQEAGAETGGEAQGGEALAPGCC 219
Query: 61 GPG 63
G
Sbjct: 220 SEG 222
>gi|27369497 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase
2 [Homo sapiens]
Length = 530
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 41 LGAALGDRLWGTAPREWGKCGPGPLGPPRQQS----AGPWEGRCPPAVKGGGPS 90
LGAA G A WG+ GP P GPPR + P+ R P A G P+
Sbjct: 92 LGAAAG-----AAGGSWGRPGPPPAGPPRAHARLDLRTPY--RPPAAAVGAAPA 138
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 58 GKCGPGPLGPPRQQSAGPWEGRCPPAVKGGGPSR 91
G G LGP R S GP G CP V PSR
Sbjct: 1154 GDGSSGFLGPDRPDSPGPTWGPCPGEVAAVAPSR 1187
>gi|239757144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 57 WGKCGPGP---LGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSA 96
W PGP G P +A W GRC P GG R R S+
Sbjct: 71 WLSVEPGPPFLFGSPGPAAAADWSGRCGPG--GGSSCRCRCSS 111
>gi|239751663 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 57 WGKCGPGP---LGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSA 96
W PGP G P +A W GRC P GG R R S+
Sbjct: 71 WLSVEPGPPFLFGSPGPAAAADWSGRCGPG--GGSSCRCRCSS 111
>gi|239746169 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 57 WGKCGPGP---LGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSA 96
W PGP G P +A W GRC P GG R R S+
Sbjct: 71 WLSVEPGPPFLFGSPGPAAAADWSGRCGPG--GGSSCRCRCSS 111
>gi|239750123 PREDICTED: hypothetical protein XP_002347295 [Homo
sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 0.54
Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 14/75 (18%)
Query: 28 AAGVRCGLKSEQELGAALGDRLWGTAPREWGKCGPGPLGPPRQQSAGPWE-----GRCPP 82
AAG+R G + G +LG G G CG GP P PW G PP
Sbjct: 61 AAGLRSGAPRRRRRGLSLGGGARG------GACGAGPGLPAPTWVRRPWSSRLSAGTAPP 114
Query: 83 AVKG---GGPSRVRP 94
V P VRP
Sbjct: 115 RVLSMTFSTPVSVRP 129
>gi|5031887 LIM domain containing preferred translocation partner in
lipoma [Homo sapiens]
Length = 612
Score = 29.6 bits (65), Expect = 0.54
Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 7 LDGDPGLSGESQRGRVLEGSLAAGVRCGLKSEQE--LGAALGDRLW----GTAPREWGKC 60
L +PG +GR EG AAG G +++ + G W G P G
Sbjct: 281 LQPEPGYGYAPNQGRYYEGYYAAGPGYGGRNDSDPTYGQQGHPNTWKREPGYTPPGAGNQ 340
Query: 61 GPGPL----GPPRQQSAGPWEGRCPPAV--KGG-----GPSRVRPS 95
P + GP + P C P + KGG GPS V PS
Sbjct: 341 NPPGMYPVTGPKKTYITDPVSAPCAPPLQPKGGHSGQLGPSSVAPS 386
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 29.6 bits (65), Expect = 0.54
Identities = 34/86 (39%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 15 GESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTAPREWGKCGPGPLGPPRQQSAG 74
G RG V GS V GL+ Q+ GAA G R G PR G GPL + AG
Sbjct: 1077 GSRDRGLVRPGSSREKVPGGLQGSQDRGAA-GSRERG-PPRRAGSQERGPL-----RRAG 1129
Query: 75 PWEGRCPPAVKGG---GPSRVRPSAE 97
E R PP G GP R S E
Sbjct: 1130 SRE-RIPPRRAGSRERGPPRGPGSRE 1154
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 62 PGPLGPPRQQSAGPWEGRCPPAVKGGGPSRVRP 94
P P PP SAGP PP++ GP V P
Sbjct: 574 PPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLP 606
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 54 PREWGKCGPGP-LGPPRQQSAGPWEGRCPPAVKGGGPSRVRP 94
P GP P L PP SAGP PP++ P V P
Sbjct: 579 PPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMP 620
>gi|157415950 hypothetical protein LOC199800 [Homo sapiens]
Length = 153
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 57 WGKC-GPGPLGPPRQQSAGPWEGRCPPAVKGGGPSR---VRPSA 96
W +C G LG + ++ GP + PP +GG P+R RP+A
Sbjct: 55 WIRCLHQGALGEGQPRAPGPLQLWAPPVARGGSPARFPGFRPAA 98
>gi|66932999 testis-specific protein kinase 1 [Homo sapiens]
Length = 626
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 61 GPGPLGPPRQQSAGPWEGRCPPAVKGGGPSRVRPSA 96
GPGP GP P EG P GGGP R RPS+
Sbjct: 10 GPGP-GPGEV----PGEGPPGPGGTGGGPGRGRPSS 40
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 13 LSGESQRGRVLEGSLAAGVRCGLKSEQELGAALGDRLWGTA--PREWGKCGPGPLGPP 68
L ++QR GS + G GL+ EQ L + D G A P G G P GPP
Sbjct: 424 LDEDTQRQLSQAGSFSDGTHGGLRYEQLLALCVTDPETGLAFLPLSGGPRGGEPQGPP 481
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 26 SLAAGVRCGLKSEQELGAALGDRLWGTAPRE-WGKCGPGPLGPPRQQSAGP---WE 77
+LA G R L S +G + G PR+ + + PGPLG P S GP WE
Sbjct: 1387 TLAGGQRRKLSSRFPVGRSSESFSPGDTPRQRFRQRHPGPLGAPVSHSKGPGVGWE 1442
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 61 GPGPLGPPRQQ--------SAGPWEGRCPPA--VKGGGPSRVRPSA 96
GP P GPPR + + P +GR P A G GP+ V+ A
Sbjct: 3830 GPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGA 3875
Score = 27.7 bits (60), Expect = 2.1
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 51 GTAPREWGKCGPGPLGPPRQQSAGPWEGRCPPAVKGGG 88
G P G GPGP GP GP G+ P A GGG
Sbjct: 12 GDGPLPPGGAGPGP-GP----GPGPGAGKPPSAPAGGG 44
>gi|224548950 hypothetical protein LOC644844 [Homo sapiens]
Length = 82
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 61 GPGPLGPPRQQSAGPWEGRCPPAVKGGGP 89
GPGP GPP GP PP G GP
Sbjct: 28 GPGPCGPPPHHGPGPCG---PPPGHGPGP 53
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 61 GPGPLGPPRQQSAGPWEGRCPPAVKGGGPSRVRP 94
GPGP GPP GP C P G GP P
Sbjct: 50 GPGPCGPPPHHGPGP----CGPP-PGHGPGHPPP 78
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 28.9 bits (63), Expect = 0.92
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 60 CGPGPLGPPRQQSAGPWEGRCPPAVK 85
C P P P +S PW CP AV+
Sbjct: 801 CSPPPEQPTATESLPPWSHSCPSAVR 826
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,551,889
Number of Sequences: 37866
Number of extensions: 317157
Number of successful extensions: 1344
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 1217
Number of HSP's gapped (non-prelim): 240
length of query: 98
length of database: 18,247,518
effective HSP length: 69
effective length of query: 29
effective length of database: 15,634,764
effective search space: 453408156
effective search space used: 453408156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.