Guide to the Human Genome
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Search of human proteins with 239741144

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo
sapiens]
         (347 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo ...   717   0.0  
gi|239752797 PREDICTED: hypothetical protein [Homo sapiens]           715   0.0  
gi|239747322 PREDICTED: hypothetical protein XP_002346421 [Homo ...   715   0.0  
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]                53   5e-07
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    50   4e-06
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    50   4e-06
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]            47   2e-05
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ...    47   2e-05
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ...    47   2e-05
gi|150170670 piccolo isoform 2 [Homo sapiens]                          45   1e-04
gi|150378539 piccolo isoform 1 [Homo sapiens]                          45   1e-04
gi|238859653 pleckstrin homology domain containing family A memb...    44   2e-04
gi|238859651 pleckstrin homology domain containing family A memb...    44   2e-04
gi|33286446 opioid growth factor receptor [Homo sapiens]               44   2e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         44   2e-04
gi|151301137 AT-hook transcription factor [Homo sapiens]               44   3e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     43   5e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     43   5e-04
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]            42   6e-04
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]            42   6e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                42   8e-04
gi|110815800 WD repeat domain 32 [Homo sapiens]                        41   0.001
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      40   0.002
gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo ...    40   0.003
gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo ...    40   0.003
gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo ...    40   0.003
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]                       40   0.003
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    39   0.007
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    39   0.007
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]            39   0.009

>gi|239741144 PREDICTED: hypothetical protein XP_002342119 [Homo
           sapiens]
          Length = 347

 Score =  717 bits (1852), Expect = 0.0
 Identities = 347/347 (100%), Positives = 347/347 (100%)

Query: 1   MRPTFDGSAAHQMRVGKVEGRIQAEVGLHDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60
           MRPTFDGSAAHQMRVGKVEGRIQAEVGLHDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM
Sbjct: 1   MRPTFDGSAAHQMRVGKVEGRIQAEVGLHDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60

Query: 61  VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120
           VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV
Sbjct: 61  VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120

Query: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180
           GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL
Sbjct: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180

Query: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240
           PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG
Sbjct: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240

Query: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300
           LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG
Sbjct: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300

Query: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347
           RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ
Sbjct: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347


>gi|239752797 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 347

 Score =  715 bits (1846), Expect = 0.0
 Identities = 346/347 (99%), Positives = 347/347 (100%)

Query: 1   MRPTFDGSAAHQMRVGKVEGRIQAEVGLHDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60
           MRPTFDGSAAHQMRVGKVEGRIQAEVGL+DAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM
Sbjct: 1   MRPTFDGSAAHQMRVGKVEGRIQAEVGLYDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60

Query: 61  VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120
           VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV
Sbjct: 61  VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120

Query: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180
           GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL
Sbjct: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180

Query: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240
           PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG
Sbjct: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240

Query: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300
           LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG
Sbjct: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300

Query: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347
           RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ
Sbjct: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347


>gi|239747322 PREDICTED: hypothetical protein XP_002346421 [Homo
           sapiens]
          Length = 347

 Score =  715 bits (1846), Expect = 0.0
 Identities = 346/347 (99%), Positives = 347/347 (100%)

Query: 1   MRPTFDGSAAHQMRVGKVEGRIQAEVGLHDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60
           MRPTFDGSAAHQMRVGKVEGRIQAEVGL+DAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM
Sbjct: 1   MRPTFDGSAAHQMRVGKVEGRIQAEVGLYDAPHLLRHVVVQVGTLQRNFAFLPQLPRRQM 60

Query: 61  VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120
           VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV
Sbjct: 61  VSCPQRLICRPPSLQTWFGNSLGSAAFPCAQDCPRRRCVLQQQLSPTCLHLEVGDLQVVV 120

Query: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180
           GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL
Sbjct: 121 GAPLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQL 180

Query: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240
           PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG
Sbjct: 181 PREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG 240

Query: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300
           LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG
Sbjct: 241 LDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG 300

Query: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347
           RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ
Sbjct: 301 RRMPTRLAPPLFLSVSPDPPTGPQRIPARQPEPRLRAQALLSRTDAQ 347


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 52/155 (33%), Positives = 55/155 (35%), Gaps = 21/155 (13%)

Query: 189 GAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLG-LDLGLGG 247
           GAA     + G PGA  P H   HP P P      P   +    HH P  LG    G  G
Sbjct: 269 GAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPG 328

Query: 248 SGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGR-----SPTFQAGRR 302
           SG      GQ           RP     HP P P   P R P  G       P    G R
Sbjct: 329 SG------GQP--------PPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMR 374

Query: 303 MPTRLAPPLFLSVSP-DPPTGPQRIPARQPEPRLR 336
            P  L PP   +  P  PP G QR P   P P  R
Sbjct: 375 GPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPR 409


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 27/199 (13%)

Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
           GG  PE ++ +      +  ++Q A  G A G  +A   +G  L +++G    AA+ A  
Sbjct: 376 GGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMG--LGKDMGAQYAAASPAWA 433

Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCG 256
           A        P  +   PGP   R    P+    ++R           G+G + H   Q  
Sbjct: 434 A--AQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQL-------YGMGSNPHSQPQ-- 482

Query: 257 QQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF--LS 314
                     S  P G  S+ PP P+ YP      GR+P   AG + P +  PP +    
Sbjct: 483 --------QSSPYPGG--SYGPPGPQRYPIG--IQGRTPGAMAGMQYPQQQMPPQYGQQG 530

Query: 315 VSPDPPTGPQRIPARQPEP 333
           VS     G Q   ++QP+P
Sbjct: 531 VSGYCQQGQQPYYSQQPQP 549



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGV-QLPREVGGTL------- 188
           GG      A AG+    A   A  A GGG  G G +    GV   PR+ GG +       
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGG 327

Query: 189 GAAAQAKGAEG--CPGAQRPFHAQDHP 213
           GAA+ +K A G    G QR      HP
Sbjct: 328 GAASLSKAAAGSAAGGFQRFAGQNQHP 354


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 27/199 (13%)

Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
           GG  PE ++ +      +  ++Q A  G A G  +A   +G  L +++G    AA+ A  
Sbjct: 376 GGSYPEYSSPSAPPPPPSQPQSQAAAAGAAAGGQQAAAGMG--LGKDMGAQYAAASPAWA 433

Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCG 256
           A        P  +   PGP   R    P+    ++R           G+G + H   Q  
Sbjct: 434 A--AQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQL-------YGMGSNPHSQPQ-- 482

Query: 257 QQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF--LS 314
                     S  P G  S+ PP P+ YP      GR+P   AG + P +  PP +    
Sbjct: 483 --------QSSPYPGG--SYGPPGPQRYPIG--IQGRTPGAMAGMQYPQQQMPPQYGQQG 530

Query: 315 VSPDPPTGPQRIPARQPEP 333
           VS     G Q   ++QP+P
Sbjct: 531 VSGYCQQGQQPYYSQQPQP 549



 Score = 35.8 bits (81), Expect = 0.058
 Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGV-QLPREVGGTL------- 188
           GG      A AG+    A   A  A GGG  G G +    GV   PR+ GG +       
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMGPGGG 327

Query: 189 GAAAQAKGAEG--CPGAQRPFHAQDHP 213
           GAA+ +K A G    G QR      HP
Sbjct: 328 GAASLSKAAAGSAAGGFQRFAGQNQHP 354


>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 281

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 71/221 (32%), Positives = 85/221 (38%), Gaps = 48/221 (21%)

Query: 110 HLEVGDLQVVVGAPLAELQLHLFAERVG----GRRPEAAAQAGSATQKAPEEAQVAQGGG 165
           HLE   +QV+VG    E+   L   RVG    G+RP AA QAG + Q A EE Q+A    
Sbjct: 69  HLEQRVVQVLVGQAALEVTQQL-PRRVGHLEGGQRPLAAPQAGGSLQDAAEEPQLA---- 123

Query: 166 ARGLGRAGGPVGVQLPREVGGTLGAAAQAKG-AEGCPGAQRPFHAQDHPGPVPARVGCGP 224
                   GP+       +G   G  A A G AEG   AQ P                 P
Sbjct: 124 --------GPLVCAAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQ---------------P 160

Query: 225 LGEEQIRRHHAPSCLGLDLGLGGS-----GHDSQQCGQQLQRAYRHRSLRPNGTASHP-- 277
               Q+ R  AP+   L L L  S     G   Q  G++   A     LRP      P  
Sbjct: 161 QRRLQVARALAPA---LSLVLLQSVPVRRGQRHQVLGREAPEAVL-LVLRPGAAQQQPQQ 216

Query: 278 PPRPESYPRRRPAPGRSPTFQAGRR----MPTRLAPPLFLS 314
           PPR  S+ RR            GR+     P R A PL LS
Sbjct: 217 PPRHPSHARRAAGSPELSWLPRGRKGTGPGPGRAARPLGLS 257


>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
           sapiens]
          Length = 346

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 71/221 (32%), Positives = 85/221 (38%), Gaps = 48/221 (21%)

Query: 110 HLEVGDLQVVVGAPLAELQLHLFAERVG----GRRPEAAAQAGSATQKAPEEAQVAQGGG 165
           HLE   +QV+VG    E+   L   RVG    G+RP AA QAG + Q A EE Q+A    
Sbjct: 134 HLEQRVVQVLVGQAALEVTQQL-PRRVGHLEGGQRPLAAPQAGGSLQDAAEEPQLA---- 188

Query: 166 ARGLGRAGGPVGVQLPREVGGTLGAAAQAKG-AEGCPGAQRPFHAQDHPGPVPARVGCGP 224
                   GP+       +G   G  A A G AEG   AQ P                 P
Sbjct: 189 --------GPLVCAAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQ---------------P 225

Query: 225 LGEEQIRRHHAPSCLGLDLGLGGS-----GHDSQQCGQQLQRAYRHRSLRPNGTASHP-- 277
               Q+ R  AP+   L L L  S     G   Q  G++   A     LRP      P  
Sbjct: 226 QRRLQVARALAPA---LSLVLLQSVPVRRGQRHQVLGREAPEAVL-LVLRPGAAQQQPQQ 281

Query: 278 PPRPESYPRRRPAPGRSPTFQAGRR----MPTRLAPPLFLS 314
           PPR  S+ RR            GR+     P R A PL LS
Sbjct: 282 PPRHPSHARRAAGSPELSWLPRGRKGTGPGPGRAARPLGLS 322


>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
           sapiens]
          Length = 346

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 71/221 (32%), Positives = 85/221 (38%), Gaps = 48/221 (21%)

Query: 110 HLEVGDLQVVVGAPLAELQLHLFAERVG----GRRPEAAAQAGSATQKAPEEAQVAQGGG 165
           HLE   +QV+VG    E+   L   RVG    G+RP AA QAG + Q A EE Q+A    
Sbjct: 134 HLEQRVVQVLVGQAALEVTQQL-PRRVGHLEGGQRPLAAPQAGGSLQDAAEEPQLA---- 188

Query: 166 ARGLGRAGGPVGVQLPREVGGTLGAAAQAKG-AEGCPGAQRPFHAQDHPGPVPARVGCGP 224
                   GP+       +G   G  A A G AEG   AQ P                 P
Sbjct: 189 --------GPLVCAAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQ---------------P 225

Query: 225 LGEEQIRRHHAPSCLGLDLGLGGS-----GHDSQQCGQQLQRAYRHRSLRPNGTASHP-- 277
               Q+ R  AP+   L L L  S     G   Q  G++   A     LRP      P  
Sbjct: 226 QRRLQVARALAPA---LSLVLLQSVPVRRGQRHQVLGREAPEAVL-LVLRPGAAQQQPQQ 281

Query: 278 PPRPESYPRRRPAPGRSPTFQAGRR----MPTRLAPPLFLS 314
           PPR  S+ RR            GR+     P R A PL LS
Sbjct: 282 PPRHPSHARRAAGSPELSWLPRGRKGTGPGPGRAARPLGLS 322


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 16/143 (11%)

Query: 199 GCPGAQRPFHAQDHPGPV--PARVG--CGPLGEE--QIRRHHAP--SCLGLDLGLGGSGH 250
           G P AQ+P H +  PGP   PA+      PL ++   ++    P  +       LG +  
Sbjct: 312 GKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKP 371

Query: 251 DSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPP 310
            +QQ G +     +  S +P   A   PP     P ++P P + PT Q G   P    P 
Sbjct: 372 PAQQTGSE-----KPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPG 426

Query: 311 LFLSVSPDPPTGPQRIPARQPEP 333
           L    SP    GP + P +QP P
Sbjct: 427 L---QSPAKAPGPTKTPVQQPGP 446



 Score = 35.4 bits (80), Expect = 0.076
 Identities = 50/206 (24%), Positives = 73/206 (35%), Gaps = 38/206 (18%)

Query: 140 RPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEG 199
           +P A       +Q  P +      G  + L +  G V  + P +  GT    AQ  G   
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTV--KPPVQPPGTTKPPAQPLGPAK 370

Query: 200 CP----GAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQC 255
            P    G+++P   Q  P  +    G G    +Q                G +   +QQ 
Sbjct: 371 PPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQP---------------GPAKPPTQQV 415

Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG-------RRMPTRLA 308
           G     A +     P   +    P P   P ++P PG+ P  QAG       +  PT+  
Sbjct: 416 GTPKPLAQQ-----PGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTK-- 468

Query: 309 PPLFLSVSPDPP---TGPQRIPARQP 331
           PP  L     PP    GP + P +QP
Sbjct: 469 PPSQLPGPAKPPPQQPGPAKPPPQQP 494



 Score = 29.6 bits (65), Expect = 4.2
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 273 TASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAP--------PLFLSVSPDPPTGPQ 324
           T   PP +   + + +P P + P   +G   P    P        P   +  P  P GP 
Sbjct: 310 TPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPA 369

Query: 325 RIPARQ 330
           + PA+Q
Sbjct: 370 KPPAQQ 375


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 16/143 (11%)

Query: 199 GCPGAQRPFHAQDHPGPV--PARVG--CGPLGEE--QIRRHHAP--SCLGLDLGLGGSGH 250
           G P AQ+P H +  PGP   PA+      PL ++   ++    P  +       LG +  
Sbjct: 312 GKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKP 371

Query: 251 DSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPP 310
            +QQ G +     +  S +P   A   PP     P ++P P + PT Q G   P    P 
Sbjct: 372 PAQQTGSE-----KPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPG 426

Query: 311 LFLSVSPDPPTGPQRIPARQPEP 333
           L    SP    GP + P +QP P
Sbjct: 427 L---QSPAKAPGPTKTPVQQPGP 446



 Score = 35.4 bits (80), Expect = 0.076
 Identities = 50/206 (24%), Positives = 73/206 (35%), Gaps = 38/206 (18%)

Query: 140 RPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEG 199
           +P A       +Q  P +      G  + L +  G V  + P +  GT    AQ  G   
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTV--KPPVQPPGTTKPPAQPLGPAK 370

Query: 200 CP----GAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQC 255
            P    G+++P   Q  P  +    G G    +Q                G +   +QQ 
Sbjct: 371 PPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQP---------------GPAKPPTQQV 415

Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAG-------RRMPTRLA 308
           G     A +     P   +    P P   P ++P PG+ P  QAG       +  PT+  
Sbjct: 416 GTPKPLAQQ-----PGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTK-- 468

Query: 309 PPLFLSVSPDPP---TGPQRIPARQP 331
           PP  L     PP    GP + P +QP
Sbjct: 469 PPSQLPGPAKPPPQQPGPAKPPPQQP 494



 Score = 29.6 bits (65), Expect = 4.2
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 273 TASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAP--------PLFLSVSPDPPTGPQ 324
           T   PP +   + + +P P + P   +G   P    P        P   +  P  P GP 
Sbjct: 310 TPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPA 369

Query: 325 RIPARQ 330
           + PA+Q
Sbjct: 370 KPPAQQ 375


>gi|238859653 pleckstrin homology domain containing family A member
           4 isoform 2 [Homo sapiens]
          Length = 583

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 54/164 (32%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 183 EVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGP---LGEEQIRRHHAPSCL 239
           ++ G L A  +A  AEG    Q    A+  PG  P   G  P    GEE  R   +P   
Sbjct: 140 DLRGWLRALGRASRAEGDDYGQPRSPARPQPGEGPGGPGGPPEVSRGEEG-RISESPEVT 198

Query: 240 GLDLGLGG------SGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGR 293
            L  G G       S       G Q++RA       P       PP P S PR R AP R
Sbjct: 199 RLSRGRGRPRLLTPSPTTDLHSGLQMRRARSPDLFTPLSR----PPSPLSLPRPRSAPAR 254

Query: 294 SPTFQAG-RRMPTRLAPPLF-LSVSPDPPTGPQR-IPARQPEPR 334
            P   +G    P R   PL  + V P    GPQR   +R P PR
Sbjct: 255 RPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQRQTLSRPPTPR 298


>gi|238859651 pleckstrin homology domain containing family A member
           4 isoform 1 [Homo sapiens]
          Length = 779

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 54/164 (32%), Positives = 64/164 (39%), Gaps = 17/164 (10%)

Query: 183 EVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGP---LGEEQIRRHHAPSCL 239
           ++ G L A  +A  AEG    Q    A+  PG  P   G  P    GEE  R   +P   
Sbjct: 140 DLRGWLRALGRASRAEGDDYGQPRSPARPQPGEGPGGPGGPPEVSRGEEG-RISESPEVT 198

Query: 240 GLDLGLGG------SGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGR 293
            L  G G       S       G Q++RA       P       PP P S PR R AP R
Sbjct: 199 RLSRGRGRPRLLTPSPTTDLHSGLQMRRARSPDLFTPLSR----PPSPLSLPRPRSAPAR 254

Query: 294 SPTFQAG-RRMPTRLAPPLF-LSVSPDPPTGPQR-IPARQPEPR 334
            P   +G    P R   PL  + V P    GPQR   +R P PR
Sbjct: 255 RPPAPSGDTAPPARPHTPLSRIDVRPPLDWGPQRQTLSRPPTPR 298


>gi|33286446 opioid growth factor receptor [Homo sapiens]
          Length = 677

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 62/235 (26%), Positives = 81/235 (34%), Gaps = 46/235 (19%)

Query: 121 GAPLAELQLHLFAERVGGRRPEAAAQ------AGSATQKAPEEAQVAQG---------GG 165
           G  L++  L    + VGG+ P  A Q            K  +  +V +G         GG
Sbjct: 416 GCALSQGSLRTGTQEVGGQDPGEAVQPCRQPLGARVADKVRKRRKVDEGAGDSAAVASGG 475

Query: 166 ARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPL 225
           A+ L  AG P     P+      G     +G  G P    P    + PGP PA    GP 
Sbjct: 476 AQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTG-PKEGTPGSPSETPGPSPA----GPA 530

Query: 226 GEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYP 285
           G+E      +PS        G +G +  +               P+ T   P PRP    
Sbjct: 531 GDEPAE---SPSETPGPRPAGPAGDEPAES--------------PSET---PGPRPAGPA 570

Query: 286 RRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDP-PTG-----PQRIPARQPEPR 334
              PA   S T       PTR  P    S +P P P G     P   P+  P PR
Sbjct: 571 GDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPR 625


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 39/118 (33%), Positives = 49/118 (41%), Gaps = 16/118 (13%)

Query: 226 GEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYP 285
           GE   RR H+PS          S    ++  +   R  R RS  P  T     P P   P
Sbjct: 515 GEVGRRRRHSPS-------RSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPP 567

Query: 286 RRRPAP-----GRSPTFQAGRRMPT--RLAPPLFLSVSPDPPTGPQRIPARQPEPRLR 336
           RRR  P      R+P+    RR P+  R +PP+    SP PP  P+R  A  P P  R
Sbjct: 568 RRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPP--PKRRTASPPPPPKR 623



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 19/86 (22%)

Query: 264 RHRSLRPNGTASHPPPR------PESY-PRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVS 316
           + RS   + + SH  PR        SY PRRRP+P R P+    RR P R  P       
Sbjct: 283 KSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPS--PRRRTPPRRMP------- 333

Query: 317 PDPPTGPQRIPARQPEPRLRAQALLS 342
           P P     R P R+   R R+ A LS
Sbjct: 334 PPPRHRRSRSPVRR---RRRSSASLS 356



 Score = 28.5 bits (62), Expect = 9.3
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 266 RSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDPPTGPQR 325
           RS +PN   S P PRP + P+   +P   P  +     P R         SP P T P R
Sbjct: 674 RSPQPNKRHS-PSPRPRA-PQTSSSP--PPVRRGASSSPQRRQ-------SPSPSTRPIR 722

Query: 326 IPARQPEPR 334
             +R PEP+
Sbjct: 723 RVSRTPEPK 731


>gi|151301137 AT-hook transcription factor [Homo sapiens]
          Length = 1439

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 53/206 (25%), Positives = 68/206 (33%), Gaps = 24/206 (11%)

Query: 149  SATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGG------TLGAAAQAKGAEGCPG 202
            S   K  +++  A   G RG+G AG P  V    +  G      +  A  +  G   CP 
Sbjct: 1184 SEKSKTTKDSPQAARDGKRGVGSAGWPDRVTFRGQYTGHEYHVLSPKAVPKGNGTVSCPH 1243

Query: 203  AQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRA 262
              RP   QD  G V       PLG         P C  +       G  S   G +    
Sbjct: 1244 C-RPIRTQDAGGAVTG----DPLGPPPADTLQCPLCGQVGSPPEADGPGSATSGAEKATT 1298

Query: 263  YRHRSLRPN--------GTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLS 314
             R  S  P+        G++  PPP         PAP   P F     +P    PP  + 
Sbjct: 1299 RRKASSTPSPKQRSKQAGSSPRPPPGLWYLATAPPAPA-PPAFAYISSVPIMPYPPAAVY 1357

Query: 315  VSPDPPTGPQRI----PARQPEPRLR 336
             +P  PT  Q      P   P P  R
Sbjct: 1358 YAPAGPTSAQPAAKWPPTASPPPARR 1383


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 25/202 (12%)

Query: 143 AAAQAGSATQKAPEEAQV--AQGGGARGLGRAGGP------VGVQLPREVGGTLGAAAQA 194
           AAA +G A Q++        + GGG + L R   P      +G   P+  GGT   + Q 
Sbjct: 346 AAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQ- 404

Query: 195 KGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ- 253
              +G P   +  H   +PG         P G +  +R+           +GG  +  Q 
Sbjct: 405 ---QGPPSGPQQGHG--YPGQ--------PYGSQTPQRYPMTMQGRAQSAMGGLSYTQQI 451

Query: 254 -QCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF 312
              GQQ    Y  +   P      P P+ +  P  +  P ++P  Q   +   +  PP  
Sbjct: 452 PPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQL 511

Query: 313 LSVSPDPPTGPQRIPARQ-PEP 333
            S  P     P + P +Q P P
Sbjct: 512 QSSQPPYSQQPSQPPHQQSPAP 533



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 46/185 (24%), Positives = 65/185 (35%), Gaps = 24/185 (12%)

Query: 141 PEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGC 200
           P ++A A S++    ++   A GGG       G P     P  +   L + + A+G +G 
Sbjct: 253 PSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPT-LNQLLTSPSSARGYQGY 311

Query: 201 PGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQ 260
           PG           GP     G GP          A  C G       +   S   G   Q
Sbjct: 312 PGGDY------SGGPQDGGAGKGP-------ADMASQCWGAAAAAAAAAAAS---GGAQQ 355

Query: 261 RAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDPP 320
           R++ H  + P  +     P       R P P  SP  Q G+  P         S    PP
Sbjct: 356 RSH-HAPMSPGSSGGGGQPL-----ARTPQPS-SPMDQMGKMRPQPYGGTNPYSQQQGPP 408

Query: 321 TGPQR 325
           +GPQ+
Sbjct: 409 SGPQQ 413


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 25/202 (12%)

Query: 143 AAAQAGSATQKAPEEAQV--AQGGGARGLGRAGGP------VGVQLPREVGGTLGAAAQA 194
           AAA +G A Q++        + GGG + L R   P      +G   P+  GGT   + Q 
Sbjct: 346 AAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQ- 404

Query: 195 KGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ- 253
              +G P   +  H   +PG         P G +  +R+           +GG  +  Q 
Sbjct: 405 ---QGPPSGPQQGHG--YPGQ--------PYGSQTPQRYPMTMQGRAQSAMGGLSYTQQI 451

Query: 254 -QCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF 312
              GQQ    Y  +   P      P P+ +  P  +  P ++P  Q   +   +  PP  
Sbjct: 452 PPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQL 511

Query: 313 LSVSPDPPTGPQRIPARQ-PEP 333
            S  P     P + P +Q P P
Sbjct: 512 QSSQPPYSQQPSQPPHQQSPAP 533



 Score = 38.9 bits (89), Expect = 0.007
 Identities = 46/185 (24%), Positives = 65/185 (35%), Gaps = 24/185 (12%)

Query: 141 PEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGC 200
           P ++A A S++    ++   A GGG       G P     P  +   L + + A+G +G 
Sbjct: 253 PSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPT-LNQLLTSPSSARGYQGY 311

Query: 201 PGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQ 260
           PG           GP     G GP          A  C G       +   S   G   Q
Sbjct: 312 PGGDY------SGGPQDGGAGKGP-------ADMASQCWGAAAAAAAAAAAS---GGAQQ 355

Query: 261 RAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDPP 320
           R++ H  + P  +     P       R P P  SP  Q G+  P         S    PP
Sbjct: 356 RSH-HAPMSPGSSGGGGQPL-----ARTPQPS-SPMDQMGKMRPQPYGGTNPYSQQQGPP 408

Query: 321 TGPQR 325
           +GPQ+
Sbjct: 409 SGPQQ 413


>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 59/225 (26%), Positives = 81/225 (36%), Gaps = 47/225 (20%)

Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREV-----GGTLGAA 191
           GGR   A A+  +     P + +       +GLG + G  G   P        GG  GA 
Sbjct: 170 GGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGAR 229

Query: 192 AQAKGAE--GCPGAQRPFHAQDHPGPVPARVGCGPL-----GEEQIRRHHAPSCLGLDLG 244
           AQ +G+E   CPG+  P        P     GC        G  Q +R  AP        
Sbjct: 230 AQVRGSEKRACPGSTLP--------PSSVLAGCVGTRARGHGGVQRQRFSAP-------- 273

Query: 245 LGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQA----- 299
              S H +       +R+ R   L P+  A     R  + P  R A    P+  A     
Sbjct: 274 ---SSHSTSGGRPTGERSSREPLLDPSKAA-----RASALPTARVAHASPPSLAAAQWRL 325

Query: 300 --GRRMPTRLAPPLFLSVS----PDPPTGPQRIPARQPEPRLRAQ 338
             G+R PT L   +   +S     DP +G    PA+  E   RA+
Sbjct: 326 GGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAE 370


>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 564

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 59/225 (26%), Positives = 81/225 (36%), Gaps = 47/225 (20%)

Query: 137 GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREV-----GGTLGAA 191
           GGR   A A+  +     P + +       +GLG + G  G   P        GG  GA 
Sbjct: 170 GGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHGGAAGAR 229

Query: 192 AQAKGAE--GCPGAQRPFHAQDHPGPVPARVGCGPL-----GEEQIRRHHAPSCLGLDLG 244
           AQ +G+E   CPG+  P        P     GC        G  Q +R  AP        
Sbjct: 230 AQVRGSEKRACPGSTLP--------PSSVLAGCVGTRARGHGGVQRQRFSAP-------- 273

Query: 245 LGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQA----- 299
              S H +       +R+ R   L P+  A     R  + P  R A    P+  A     
Sbjct: 274 ---SSHSTSGGRPTGERSSREPLLDPSKAA-----RASALPTARVAHASPPSLAAAQWRL 325

Query: 300 --GRRMPTRLAPPLFLSVS----PDPPTGPQRIPARQPEPRLRAQ 338
             G+R PT L   +   +S     DP +G    PA+  E   RA+
Sbjct: 326 GGGKRKPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAE 370


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 54/188 (28%), Positives = 63/188 (33%), Gaps = 32/188 (17%)

Query: 152 QKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRPFHAQD 211
           Q  P  + VA   G +G     GP GV          G+  Q +G +G  GA  P   Q 
Sbjct: 619 QGRPGPSGVAGPQGEKGDVGPAGPPGVP---------GSVVQQEGLKGEQGAPGPRGHQG 669

Query: 212 HPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYRHRSLRPN 271
            PGP  AR   GP+G E   R   P   GL    G  G                    P 
Sbjct: 670 APGPPGAR---GPIGPE--GRDGPPGLQGLRGKKGDMGPPG----------------IPG 708

Query: 272 GTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLS-VSPDPPTGPQRIPARQ 330
                 PP P   P   P PG SP        P +  PP        D P GP   P  +
Sbjct: 709 LLGLQGPPGPPGVP-GPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTK 767

Query: 331 PEPRLRAQ 338
            EP  R +
Sbjct: 768 GEPGERGE 775



 Score = 28.5 bits (62), Expect = 9.3
 Identities = 35/131 (26%), Positives = 44/131 (33%), Gaps = 4/131 (3%)

Query: 165  GARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGP--VPARVG- 221
            GA G+  A GP G+Q      G  G    + G  G PG +        PGP   P + G 
Sbjct: 1204 GADGIAGAAGPPGIQGSPGKEGPPGPQGPS-GLPGIPGEEGKEGRDGKPGPPGEPGKAGE 1262

Query: 222  CGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYRHRSLRPNGTASHPPPRP 281
             G  G E  R          D G  G   +S   G   Q     +      T    P  P
Sbjct: 1263 PGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGP 1322

Query: 282  ESYPRRRPAPG 292
               P +  +PG
Sbjct: 1323 RGPPGKNGSPG 1333


>gi|110815800 WD repeat domain 32 [Homo sapiens]
          Length = 559

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 268 LRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSVSPDPPTGPQRIP 327
           L P   A+HPPP P   PRR  AP  SP  ++G  +    AP    + +P  P+ P   P
Sbjct: 38  LHPGADATHPPP-PARSPRRPGAPSLSPAPRSG-ELGLPGAPESSTASAPGEPSPPSP-P 94

Query: 328 ARQPEPRLRAQA 339
            R+P P  RA++
Sbjct: 95  CRRPGPDCRAKS 106



 Score = 33.5 bits (75), Expect = 0.29
 Identities = 36/121 (29%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 137 GGRRPEAAAQAGS-ATQKAPEEAQVAQGGGAR----GLGRAGGPVGVQLPREVGGTLGAA 191
           G   P     AG+ A +  P E Q A  G       G      P   + PR  G    + 
Sbjct: 5   GPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPRRPGAPSLSP 64

Query: 192 AQAKGAEGCPGAQRPFHAQDHPGPVPARVGC---GPLGEEQIRRHHAPSCLGLDLGLGGS 248
           A   G  G PGA     A     P P    C   GP    + R  H     GL  GLGG 
Sbjct: 65  APRSGELGLPGAPESSTASAPGEPSPPSPPCRRPGPDCRAKSRGRH-----GLGAGLGGP 119

Query: 249 G 249
           G
Sbjct: 120 G 120


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 32/86 (37%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 144 AAQAGSATQKAPEEAQVAQG-GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPG 202
           A   G+  Q   + A  A G  GA G   A GP G Q P   GG  G    + G  G PG
Sbjct: 385 AGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGP---GGPPGPKGNS-GEPGAPG 440

Query: 203 AQRPFHAQDHPGPVPARVGCGPLGEE 228
           ++    A+  PGPV  +   GP GEE
Sbjct: 441 SKGDTGAKGEPGPVGVQGPPGPAGEE 466



 Score = 36.6 bits (83), Expect = 0.034
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%)

Query: 154 APEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRPFHAQDHP 213
           AP  A      GA G     GP G   P    G +GA  +A G +G  G++ P   +  P
Sbjct: 315 APGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA-GPQGPRGSEGPQGVRGEP 373

Query: 214 GPVPARVGCGPLG 226
           GP       GP G
Sbjct: 374 GPPGPAGAAGPAG 386



 Score = 33.1 bits (74), Expect = 0.38
 Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 2/88 (2%)

Query: 141 PEAAAQAGS-ATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEG 199
           P A  Q G+     AP  A      GARG     GP G   P+   G  GA   +KG  G
Sbjct: 388 PGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG-SKGDTG 446

Query: 200 CPGAQRPFHAQDHPGPVPARVGCGPLGE 227
             G   P   Q  PGP       G  GE
Sbjct: 447 AKGEPGPVGVQGPPGPAGEEGKRGARGE 474



 Score = 32.3 bits (72), Expect = 0.64
 Identities = 53/180 (29%), Positives = 61/180 (33%), Gaps = 38/180 (21%)

Query: 174 GPVGVQLPREVGGTLGAAAQA-----KGAEGCPGAQRPFHAQDHPGP-----------VP 217
           GP+G   PR + G  GA          G  G PGA  P   +  PGP            P
Sbjct: 179 GPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKP 238

Query: 218 ARVG-CGPLGEEQIRRHHAPSCLGLD--------LGLGGSGHDSQQCGQQLQRAYRHRSL 268
            R G  GP G +  R    P   GL          GL G+  D+   G + +      S 
Sbjct: 239 GRPGERGPPGPQGAR--GLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPG----SP 292

Query: 269 RPNGTASHPPPRPESYPRRRP-APGRSPTFQAGRRMPTRLAPPLFLSVSPDPPTGPQRIP 327
             NG      PR     R RP APG  P    G    T  A P      P  P GP   P
Sbjct: 293 GENGAPGQMGPRGLPGERGRPGAPG--PAGARGNDGATGAAGP----PGPTGPAGPPGFP 346



 Score = 31.6 bits (70), Expect = 1.1
 Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 122 APLAELQLHLFAERVGGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLP 181
           A L  ++ H     + G + +A          +P E       G RGL    G  G   P
Sbjct: 259 AGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGP 318

Query: 182 REVGGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLG 226
               G  GA     GA G PG   P      PG V A+   GP G
Sbjct: 319 AGARGNDGAT----GAAGPPGPTGPAGPPGFPGAVGAKGEAGPQG 359



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 2/89 (2%)

Query: 140 RPEAAAQAGSATQKAPEEAQVAQG-GGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAE 198
           +P      G      P  A+  +G  G RG+    GP G +      G  GA   A GA 
Sbjct: 657 KPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDA-GAP 715

Query: 199 GCPGAQRPFHAQDHPGPVPARVGCGPLGE 227
           G PG+Q     Q  PG   A    GP G+
Sbjct: 716 GAPGSQGAPGLQGMPGERGAAGLPGPKGD 744



 Score = 30.4 bits (67), Expect = 2.4
 Identities = 53/199 (26%), Positives = 62/199 (31%), Gaps = 37/199 (18%)

Query: 147  AGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGCPGAQRP 206
            AG   +   E A  A+G      GR G P G +  R   G  G    A GA G PG   P
Sbjct: 1006 AGPPGESGREGAPGAEGSP----GRDGSP-GAKGDRGETGPAGPPG-APGAPGAPGPVGP 1059

Query: 207  FHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQRAYR-H 265
                   G        GP+G    R    P          G   D  + G+Q  R  + H
Sbjct: 1060 AGKSGDRGETGPAGPAGPVGPVGARGPAGPQ---------GPRGDKGETGEQGDRGIKGH 1110

Query: 266  RSLR----PNGTASHP----------PPRPESYPRRRPAPGR-------SPTFQAGRRMP 304
            R       P G    P          P  P   P    APG+        P    G R  
Sbjct: 1111 RGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGR 1170

Query: 305  TRLAPPLFLSVSPDPPTGP 323
            T  A P+     P PP  P
Sbjct: 1171 TGDAGPVGPPGPPGPPGPP 1189



 Score = 29.6 bits (65), Expect = 4.2
 Identities = 33/86 (38%), Positives = 37/86 (43%), Gaps = 17/86 (19%)

Query: 133 AERVGGRRPEAAAQAGSATQKAPEEAQVAQGG-GARGLGRAGGPVGVQLPREVG--GTLG 189
           A RVG   P     +G+A    P      +GG G RG     GP G   P EVG  G  G
Sbjct: 880 AGRVGPPGP-----SGNAGPPGPPGPAGKEGGKGPRG---ETGPAG--RPGEVGPPGPPG 929

Query: 190 AAAQAKGAEGCPGAQRPFHAQDHPGP 215
            A    G +G PGA  P  A   PGP
Sbjct: 930 PA----GEKGSPGADGPAGAPGTPGP 951



 Score = 28.9 bits (63), Expect = 7.1
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 163 GGGARGLGRAGGPVGVQLPREVGGTLGAA--------AQAKGAEGCPGAQRPFHAQDHPG 214
           G G+RG   A G  G + P    G+ G A        A   G  G PGA+    +   PG
Sbjct: 489 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPG 548

Query: 215 PVPARVGCGPLGEE 228
           P       GP G++
Sbjct: 549 PDGKTGPPGPAGQD 562



 Score = 28.5 bits (62), Expect = 9.3
 Identities = 30/117 (25%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 141 PEAAAQAGSATQKAPEEAQVAQGG----GARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
           P +    G+  +  P   Q   G     G RG     GP G+  P    G  G+     G
Sbjct: 439 PGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRG-FPG 497

Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ 253
           A+G  G + P   +  PGP   +   G  G         P   GL    G  G D +
Sbjct: 498 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRP--GEAGLPGAKGLTGSPGSPGPDGK 552



 Score = 28.5 bits (62), Expect = 9.3
 Identities = 43/171 (25%), Positives = 53/171 (30%), Gaps = 33/171 (19%)

Query: 141 PEAAAQAGSATQKA-PEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEG 199
           P  A   GS  +   P EA +    G  G   + GP G   P    G  G      G  G
Sbjct: 514 PGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP----GPPG 569

Query: 200 CPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQL 259
            PGA+        PGP  A    G  GE  +         G    +G +G D +      
Sbjct: 570 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVP--------GPPGAVGPAGKDGEA----- 616

Query: 260 QRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPP 310
                       G    P P   +  R    P  SP FQ    +P    PP
Sbjct: 617 ------------GAQGPPGPAGPAGERGEQGPAGSPGFQG---LPGPAGPP 652



 Score = 28.5 bits (62), Expect = 9.3
 Identities = 28/92 (30%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 140 RPEAAAQAGSATQK--APEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAA--QAK 195
           +P A  + G A  K  A         G    +G  G P G +  R   G  GA     A 
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP-GAKGARGSAGPPGATGFPGAA 880

Query: 196 GAEGCPGAQRPFHAQDHPGPVPARVGCGPLGE 227
           G  G PG          PGP     G GP GE
Sbjct: 881 GRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912


>gi|239753435 PREDICTED: hypothetical protein XP_002345651 [Homo
           sapiens]
          Length = 218

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSV 315
           G+Q  R+Y +    P G  S PPP P   P R P P R          P    PPL    
Sbjct: 4   GKQRDRSYSNFVFFPCGLWSPPPPLPPRKPPRPPKPPRP-------LPPNPPRPPLPPPR 56

Query: 316 SPDPPTGPQRIPARQPEPRLRAQA 339
            P PP  P R P + P P   AQ+
Sbjct: 57  PPKPPLPPPR-PPKPPSPLGLAQS 79


>gi|239747993 PREDICTED: hypothetical protein XP_002346504 [Homo
           sapiens]
          Length = 218

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSV 315
           G+Q  R+Y +    P G  S PPP P   P R P P R          P    PPL    
Sbjct: 4   GKQRDRSYSNFVFFPCGLWSPPPPLPPRKPPRPPKPPRP-------LPPNPPRPPLPPPR 56

Query: 316 SPDPPTGPQRIPARQPEPRLRAQA 339
            P PP  P R P + P P   AQ+
Sbjct: 57  PPKPPLPPPR-PPKPPSPLGLAQS 79


>gi|239741891 PREDICTED: hypothetical protein XP_002342316 [Homo
           sapiens]
          Length = 218

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 30/84 (35%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 256 GQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLFLSV 315
           G+Q  R+Y +    P G  S PPP P   P R P P R          P    PPL    
Sbjct: 4   GKQRDRSYSNFVFFPCGLWSPPPPLPPRKPPRPPKPPRP-------LPPNPPRPPLPPPR 56

Query: 316 SPDPPTGPQRIPARQPEPRLRAQA 339
            P PP  P R P + P P   AQ+
Sbjct: 57  PPKPPLPPPR-PPKPPSPLGLAQS 79


>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
          Length = 1426

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 253 QQCGQQLQRAYRHRSLRPNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPTRLAPPLF 312
           QQC  Q    ++H    P G    PPP  +  P    APG +  F  G  MP  L PP  
Sbjct: 493 QQCSLQDMMVHQHG---PRGVVRGPPPPYQMTPSEGWAPGGTEPFSDGINMPHSL-PPRG 548

Query: 313 LSVSPDPPTGPQRIP 327
           ++  P+ P    R+P
Sbjct: 549 MAPHPNMPGSQMRLP 563


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 53/185 (28%), Positives = 63/185 (34%), Gaps = 31/185 (16%)

Query: 165 GARGLGRAGGPVGVQLPREVGGTLGAAAQA-----------KGAEGCPGAQRPFHAQDHP 213
           G  G   A GP G Q PR   GT G+   A            GA+G  GA     A   P
Sbjct: 375 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 434

Query: 214 GP--VPARVGC-GPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ--------QCGQQLQRA 262
           GP   P   G  GPLG +   +   P   G     G  G              G++ +R 
Sbjct: 435 GPRGPPGPQGATGPLGPK--GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG 492

Query: 263 YRHRSLRPNGTASHPPPRPESYPRRRPAPGR----SPTFQAGRRMPTRLAPPLFLSVSPD 318
            R     P G     PP     P  R  PG+     P    G R P+ LA P   +  P 
Sbjct: 493 ARG---EPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG 549

Query: 319 PPTGP 323
            P  P
Sbjct: 550 RPGEP 554



 Score = 36.2 bits (82), Expect = 0.045
 Identities = 47/185 (25%), Positives = 58/185 (31%), Gaps = 22/185 (11%)

Query: 137  GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
            G R P         T  A E  +    G     GR G   GV+  R   G +GA   A G
Sbjct: 1014 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA-AGVKGDRGETGAVGAPG-APG 1071

Query: 197  AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCG 256
              G PG   P   Q   G   A+   GP G    R    P          G   D  + G
Sbjct: 1072 PPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ---------GPRGDKGEAG 1122

Query: 257  QQLQRAYR-HRSLR----------PNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPT 305
            +  +R  + HR             P+G      P   S PR  P P           +P 
Sbjct: 1123 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPG 1182

Query: 306  RLAPP 310
             + PP
Sbjct: 1183 PIGPP 1187



 Score = 34.3 bits (77), Expect = 0.17
 Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 165 GARGL-GRAGGP--VGVQLPREVGGTLGAAAQ--AKGAEGCPGAQRPFHAQDHPGPVPAR 219
           G RG  G  G P   G+Q PR + GT G      A G  G PGAQ P   Q  PG   A 
Sbjct: 699 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA 758

Query: 220 VGCGPLGE 227
              GP G+
Sbjct: 759 GIAGPKGD 766



 Score = 33.1 bits (74), Expect = 0.38
 Identities = 52/210 (24%), Positives = 66/210 (31%), Gaps = 25/210 (11%)

Query: 141  PEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGC 200
            P A  Q G+  ++  E  Q    G     G +G P G Q P  V G  GA    +GA+G 
Sbjct: 839  PGADGQPGAKGEQG-EAGQKGDAGAPGPQGPSGAP-GPQGPTGVTGPKGA----RGAQGP 892

Query: 201  PGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQ 260
            PGA     A    GP  +    GP G         P     D G  G   +    G    
Sbjct: 893  PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 952

Query: 261  RAYRHRSLRPNGTASHPPPRPESYPRRR-----------------PAPGRSPTFQAGRRM 303
               +        + +  PP P+    +R                 P P   P  Q     
Sbjct: 953  PGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 1012

Query: 304  PTRLAPPLFLSVSPDPPTGPQRIPARQPEP 333
                 PP    V P   TGP   P R+  P
Sbjct: 1013 SGDRGPP--GPVGPPGLTGPAGEPGREGSP 1040



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 143 AAAQAGSATQKAPEEAQVAQGG-GARGLGRAGGPVGVQLPREVGGTLGAAAQA-----KG 196
           A  + G      P  +  A+G  G RG     GP G   P    G  GA  +      KG
Sbjct: 799 ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 858

Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLG 226
             G PG Q P  A   PGP       GP G
Sbjct: 859 DAGAPGPQGPSGA---PGPQGPTGVTGPKG 885



 Score = 28.5 bits (62), Expect = 9.3
 Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 161 AQGGGARGLGRAGGPVGVQLPREVGGTLG--AAAQAKGAEGCPGAQRPFHAQDHPGPVPA 218
           A   GARG     GP G   P    G  G   A  AKG  G  GA+ P  AQ   G    
Sbjct: 338 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 397

Query: 219 RVGCGPLG 226
               GP G
Sbjct: 398 PGSPGPAG 405


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 53/185 (28%), Positives = 63/185 (34%), Gaps = 31/185 (16%)

Query: 165 GARGLGRAGGPVGVQLPREVGGTLGAAAQA-----------KGAEGCPGAQRPFHAQDHP 213
           G  G   A GP G Q PR   GT G+   A            GA+G  GA     A   P
Sbjct: 306 GEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFP 365

Query: 214 GP--VPARVGC-GPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQ--------QCGQQLQRA 262
           GP   P   G  GPLG +   +   P   G     G  G              G++ +R 
Sbjct: 366 GPRGPPGPQGATGPLGPK--GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRG 423

Query: 263 YRHRSLRPNGTASHPPPRPESYPRRRPAPGR----SPTFQAGRRMPTRLAPPLFLSVSPD 318
            R     P G     PP     P  R  PG+     P    G R P+ LA P   +  P 
Sbjct: 424 ARG---EPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPG 480

Query: 319 PPTGP 323
            P  P
Sbjct: 481 RPGEP 485



 Score = 36.2 bits (82), Expect = 0.045
 Identities = 47/185 (25%), Positives = 58/185 (31%), Gaps = 22/185 (11%)

Query: 137  GGRRPEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKG 196
            G R P         T  A E  +    G     GR G   GV+  R   G +GA   A G
Sbjct: 945  GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGA-AGVKGDRGETGAVGAPG-APG 1002

Query: 197  AEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCG 256
              G PG   P   Q   G   A+   GP G    R    P          G   D  + G
Sbjct: 1003 PPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQ---------GPRGDKGEAG 1053

Query: 257  QQLQRAYR-HRSLR----------PNGTASHPPPRPESYPRRRPAPGRSPTFQAGRRMPT 305
            +  +R  + HR             P+G      P   S PR  P P           +P 
Sbjct: 1054 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPG 1113

Query: 306  RLAPP 310
             + PP
Sbjct: 1114 PIGPP 1118



 Score = 34.3 bits (77), Expect = 0.17
 Identities = 28/68 (41%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 165 GARGL-GRAGGP--VGVQLPREVGGTLGAAAQ--AKGAEGCPGAQRPFHAQDHPGPVPAR 219
           G RG  G  G P   G+Q PR + GT G      A G  G PGAQ P   Q  PG   A 
Sbjct: 630 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA 689

Query: 220 VGCGPLGE 227
              GP G+
Sbjct: 690 GIAGPKGD 697



 Score = 33.1 bits (74), Expect = 0.38
 Identities = 52/210 (24%), Positives = 66/210 (31%), Gaps = 25/210 (11%)

Query: 141 PEAAAQAGSATQKAPEEAQVAQGGGARGLGRAGGPVGVQLPREVGGTLGAAAQAKGAEGC 200
           P A  Q G+  ++  E  Q    G     G +G P G Q P  V G  GA    +GA+G 
Sbjct: 770 PGADGQPGAKGEQG-EAGQKGDAGAPGPQGPSGAP-GPQGPTGVTGPKGA----RGAQGP 823

Query: 201 PGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLGLGGSGHDSQQCGQQLQ 260
           PGA     A    GP  +    GP G         P     D G  G   +    G    
Sbjct: 824 PGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGP 883

Query: 261 RAYRHRSLRPNGTASHPPPRPESYPRRR-----------------PAPGRSPTFQAGRRM 303
              +        + +  PP P+    +R                 P P   P  Q     
Sbjct: 884 PGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGA 943

Query: 304 PTRLAPPLFLSVSPDPPTGPQRIPARQPEP 333
                PP    V P   TGP   P R+  P
Sbjct: 944 SGDRGPP--GPVGPPGLTGPAGEPGREGSP 971



 Score = 30.8 bits (68), Expect = 1.9
 Identities = 29/90 (32%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 143 AAAQAGSATQKAPEEAQVAQGG-GARGLGRAGGPVGVQLPREVGGTLGAAAQA-----KG 196
           A  + G      P  +  A+G  G RG     GP G   P    G  GA  +      KG
Sbjct: 730 ANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKG 789

Query: 197 AEGCPGAQRPFHAQDHPGPVPARVGCGPLG 226
             G PG Q P  A   PGP       GP G
Sbjct: 790 DAGAPGPQGPSGA---PGPQGPTGVTGPKG 816



 Score = 28.5 bits (62), Expect = 9.3
 Identities = 25/68 (36%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 161 AQGGGARGLGRAGGPVGVQLPREVGGTLG--AAAQAKGAEGCPGAQRPFHAQDHPGPVPA 218
           A   GARG     GP G   P    G  G   A  AKG  G  GA+ P  AQ   G    
Sbjct: 269 AGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGT 328

Query: 219 RVGCGPLG 226
               GP G
Sbjct: 329 PGSPGPAG 336


>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 182

 Score = 38.5 bits (88), Expect = 0.009
 Identities = 50/170 (29%), Positives = 57/170 (33%), Gaps = 28/170 (16%)

Query: 185 GGTLGAAAQAKGAEGCPGAQRPFHAQDHPGPVPARVGCGPLGEEQIRRHHAPSCLGLDLG 244
           GG  G   QA    G  G QR   +   P P P                 + S      G
Sbjct: 13  GGATGGGPQAARRSGVQGGQRNSTSARAPPPPPLAPSSS-----------SSSGSSGSSG 61

Query: 245 LGGSGHDSQ-------QCGQQLQRAYRHRSLRPNGTA--SHPPPRPESYPRRRPAPGRSP 295
            GGSG   Q         G   +RA      R  GTA  +  PP P   P   P PG   
Sbjct: 62  GGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGGTALRAREPPPPLLPPPSPPQPG--- 118

Query: 296 TFQAGRRMPTRLAPPL-FLSVSPDPPTGPQRIPARQ--PEPRLRAQALLS 342
               G   P  L  PL  L  +P PP  P R   R+   E R+   AL S
Sbjct: 119 --PKGPASPRPLPSPLPLLETTPFPPDTPSRRQDRRGGGEERVLLSALSS 166


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,609,753
Number of Sequences: 37866
Number of extensions: 1099110
Number of successful extensions: 8471
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 577
Number of HSP's that attempted gapping in prelim test: 7077
Number of HSP's gapped (non-prelim): 1885
length of query: 347
length of database: 18,247,518
effective HSP length: 103
effective length of query: 244
effective length of database: 14,347,320
effective search space: 3500746080
effective search space used: 3500746080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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