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Search of human proteins with 239741113
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741113 PREDICTED: hypothetical protein XP_002342112 [Homo
sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752777 PREDICTED: hypothetical protein [Homo sapiens] 229 4e-61
gi|239747289 PREDICTED: hypothetical protein XP_002346412 [Homo ... 229 4e-61
gi|239741113 PREDICTED: hypothetical protein XP_002342112 [Homo ... 229 4e-61
gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi... 40 5e-04
gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens] 40 5e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.013
gi|210031154 zinc finger protein 541 [Homo sapiens] 35 0.013
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 35 0.017
gi|38787970 tensin like C1 domain containing phosphatase isoform... 34 0.029
gi|38787957 tensin like C1 domain containing phosphatase isoform... 34 0.029
gi|38787941 tensin like C1 domain containing phosphatase isoform... 34 0.029
gi|26051273 voltage-gated potassium channel, subfamily H, member... 33 0.038
gi|4557729 voltage-gated potassium channel, subfamily H, member ... 33 0.038
gi|91208420 bassoon protein [Homo sapiens] 33 0.038
gi|66773040 phosphatidic acid phosphatase type 2 domain containi... 33 0.049
gi|239756768 PREDICTED: similar to hCG1774990 [Homo sapiens] 33 0.065
gi|239751271 PREDICTED: similar to hCG1774990 [Homo sapiens] 33 0.065
gi|239745760 PREDICTED: similar to hCG1774990 [Homo sapiens] 33 0.065
gi|21704287 sialidase 4 [Homo sapiens] 33 0.065
gi|115511036 alpha-kinase 3 [Homo sapiens] 32 0.084
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 32 0.084
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 32 0.084
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 32 0.084
gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens] 32 0.14
gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens] 32 0.14
gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens] 32 0.14
gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens] 32 0.14
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 32 0.14
gi|156071474 solute carrier family 4, anion exchanger, member 2 ... 30 0.32
gi|83716021 GRB2-associated binding protein family, member 4 [Ho... 30 0.32
>gi|239752777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 108
Score = 229 bits (584), Expect = 4e-61
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MCIIVSCSAHATSAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQA 60
MCIIVSCSAHATSAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQA
Sbjct: 1 MCIIVSCSAHATSAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQA 60
Query: 61 VASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS 108
VASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS
Sbjct: 61 VASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS 108
>gi|239747289 PREDICTED: hypothetical protein XP_002346412 [Homo
sapiens]
Length = 108
Score = 229 bits (584), Expect = 4e-61
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MCIIVSCSAHATSAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQA 60
MCIIVSCSAHATSAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQA
Sbjct: 1 MCIIVSCSAHATSAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQA 60
Query: 61 VASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS 108
VASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS
Sbjct: 61 VASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS 108
>gi|239741113 PREDICTED: hypothetical protein XP_002342112 [Homo
sapiens]
Length = 108
Score = 229 bits (584), Expect = 4e-61
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MCIIVSCSAHATSAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQA 60
MCIIVSCSAHATSAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQA
Sbjct: 1 MCIIVSCSAHATSAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQA 60
Query: 61 VASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS 108
VASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS
Sbjct: 61 VASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS 108
>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
sapiens]
Length = 401
Score = 39.7 bits (91), Expect = 5e-04
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 42 GAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPG- 100
GAPA G + GH QQ+ ++AA I G G GAHPG PG G
Sbjct: 303 GAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSG------GAGLGAHPGHQPGSAGQ 356
Query: 101 GPDV 104
PD+
Sbjct: 357 SPDL 360
>gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]
Length = 371
Score = 39.7 bits (91), Expect = 5e-04
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 42 GAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPG- 100
GAPA G + GH QQ+ ++AA I G G GAHPG PG G
Sbjct: 273 GAPAPGAASLQGHAQQQAQHQAQAAQAAAAAISVGSG------GAGLGAHPGHQPGSAGQ 326
Query: 101 GPDV 104
PD+
Sbjct: 327 SPDL 330
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/86 (36%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 17 PAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDAR 76
PAG PA R E + AG AP V + A A A P + AR
Sbjct: 116 PAGPAPPAAKLRPPPEGS----AGSCAPVPAAAAVAAGPEP--APAGPAKPAGPAALAAR 169
Query: 77 QGPLRQGLGPSCGAHPGSAPGVPGGP 102
GP G GP G PG PG P GP
Sbjct: 170 AGP---GPGPGPGPGPGPGPGKPAGP 192
Score = 32.7 bits (73), Expect = 0.065
Identities = 32/93 (34%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 18 AGGLVPAQLPRSRREQAHSRGAGPGA----PAHGEVDVDGH---VQQRQAVASRAATKRP 70
+ G PA P + S GPGA PA G V + VQ A A P
Sbjct: 308 SAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPG-VKAESPKRVVQAAPPAAQTLAASGP 366
Query: 71 GEIDARQ--GPLRQGLGPSCGAHPGSAPGVPGG 101
A GP QG PS A P APG P G
Sbjct: 367 ASTAASMVIGPTMQGALPSPAAVPPPAPGTPTG 399
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 35.0 bits (79), Expect = 0.013
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 25/109 (22%)
Query: 9 AHATSAWWPAGGLVPAQLP--RSRREQAHSRGAG---------PGAPAHGEVDVDGHVQQ 57
A +T+ WP GG VPA LP R + A S+ + PG P +V
Sbjct: 377 ARSTAECWPEGGSVPACLPLFRGQTVPASSQPSSHSFQWLRNLPGCPKSKGNNV------ 430
Query: 58 RQAVASRAATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDA 106
+P + +R+G G GPS G+ +P PGG DA
Sbjct: 431 -------FVVHKPSAVPSREGS-ESGPGPSSGSPSEESPPGPGGGLEDA 471
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 34.7 bits (78), Expect = 0.017
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 6 SCSAHATSAWWPAGGLVPAQLPRSRREQ----AHSRGAGPGAPAH--GEVDVDGHVQQRQ 59
S S +TS+ + P LP++ RE+ A G GPG+ AH G D +Q+Q
Sbjct: 46 SSSTSSTSSTSSSSTTAPL-LPKAAREKPEAPAEPPGPGPGSGAHPGGSARPDAKEEQQQ 104
Query: 60 AVASRAAT---KRPGEIDARQGPLRQGLGPSCGAHPGSAPG 97
+ + + KR +++ LR+ + P AH APG
Sbjct: 105 QLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPG 145
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 33.9 bits (76), Expect = 0.029
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 16 WPAGGLVPAQLPRSRRE---QAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGE 72
W G + LPRS R+ A S +GP P H V G R R T+ P
Sbjct: 756 WREGPSGHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKESTR-----RQDTRSPTS 810
Query: 73 IDARQGPLRQGLGPSCGAHPGSAPGVPGG 101
++ + L P A G AP +P G
Sbjct: 811 APTQRLSPGEALPPVSQAGTGKAPELPSG 839
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 33.9 bits (76), Expect = 0.029
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 16 WPAGGLVPAQLPRSRRE---QAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGE 72
W G + LPRS R+ A S +GP P H V G R R T+ P
Sbjct: 880 WREGPSGHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKESTR-----RQDTRSPTS 934
Query: 73 IDARQGPLRQGLGPSCGAHPGSAPGVPGG 101
++ + L P A G AP +P G
Sbjct: 935 APTQRLSPGEALPPVSQAGTGKAPELPSG 963
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 33.9 bits (76), Expect = 0.029
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 16 WPAGGLVPAQLPRSRRE---QAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGE 72
W G + LPRS R+ A S +GP P H V G R R T+ P
Sbjct: 890 WREGPSGHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKESTR-----RQDTRSPTS 944
Query: 73 IDARQGPLRQGLGPSCGAHPGSAPGVPGG 101
++ + L P A G AP +P G
Sbjct: 945 APTQRLSPGEALPPVSQAGTGKAPELPSG 973
>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
isoform c [Homo sapiens]
Length = 819
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 41 PGAPAHGEVDVDGHVQQRQAVASRAAT----KRPGEIDARQGPLRQGLGPSCGAHPGSAP 96
PG+P E++ Q+++ ++ R T ++PGE+ A GP R G GPS PG
Sbjct: 529 PGSPGSTELEGGFSRQRKRKLSFRRRTDKDTEQPGEVSAL-GPGRAGAGPSSRGRPGGPW 587
Query: 97 G 97
G
Sbjct: 588 G 588
>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
isoform a [Homo sapiens]
Length = 1159
Score = 33.5 bits (75), Expect = 0.038
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 41 PGAPAHGEVDVDGHVQQRQAVASRAAT----KRPGEIDARQGPLRQGLGPSCGAHPGSAP 96
PG+P E++ Q+++ ++ R T ++PGE+ A GP R G GPS PG
Sbjct: 869 PGSPGSTELEGGFSRQRKRKLSFRRRTDKDTEQPGEVSAL-GPGRAGAGPSSRGRPGGPW 927
Query: 97 G 97
G
Sbjct: 928 G 928
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 33.5 bits (75), Expect = 0.038
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 12/94 (12%)
Query: 19 GGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDARQG 78
G A P + + S GP PA G + Q S+ K P + A Q
Sbjct: 3809 GSAPAASQPAGKPQPGPSTATGP-QPA-------GPPRAEQTNGSKGTAKAPQQGRAPQA 3860
Query: 79 PLRQGLGPS---CGAHPGSAPGVPGG-PDVDAGS 108
G GP+ GA PG PG P G P D S
Sbjct: 3861 QPAPGPGPAGVKAGARPGGTPGAPAGQPGADGES 3894
Score = 26.6 bits (57), Expect = 4.6
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 18 AGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDARQ 77
A + PA+ P + A ++ G G P+ E+ V ++ + AA K A
Sbjct: 2270 ASSVPPAEGPVYLGKPAAAKAPGAGGPSRPEMPVGAAREEPLPTTTPAAIKEAAGAPA-P 2328
Query: 78 GPLRQGLGPSCGAHPGSAPGVPGGP 102
PL G P A PG G P
Sbjct: 2329 APL-AGQKPPADAAPGGGSGALSRP 2352
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 23 PAQLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDARQGP 79
PA+ P + +Q SR GPG P G RQA +R AT PG A P
Sbjct: 253 PAKQPLGKPDQERSR--GPGGPQPG---------SRQAETAR-ATSVPGPAQAAAPP 297
>gi|66773040 phosphatidic acid phosphatase type 2 domain
containing 2 [Homo sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.049
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 34 AHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRP--GEIDARQGPL-RQGLGPSCGA 90
A S + PG+PAHG + + ++SRA P + A + P+ R+G P A
Sbjct: 17 ASSSSSSPGSPAHGGGGGGSRFEFQSLLSSRATAVDPTCARLRASESPVHRRGSFPLAAA 76
Query: 91 HPGSAPGVP 99
P +P P
Sbjct: 77 GPSQSPAPP 85
>gi|239756768 PREDICTED: similar to hCG1774990 [Homo sapiens]
Length = 280
Score = 32.7 bits (73), Expect = 0.065
Identities = 25/76 (32%), Positives = 31/76 (40%)
Query: 27 PRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDARQGPLRQGLGP 86
PR R+E+ RGA A + + D HV+ AVA A R DA P R + P
Sbjct: 147 PRPRKEKWEERGARRPASSAAQDDYARHVRDPPAVAVAAPKARASAPDAVVTPPRLAVAP 206
Query: 87 SCGAHPGSAPGVPGGP 102
SA G P
Sbjct: 207 VPVLPAASAAGDMSNP 222
>gi|239751271 PREDICTED: similar to hCG1774990 [Homo sapiens]
Length = 246
Score = 32.7 bits (73), Expect = 0.065
Identities = 25/76 (32%), Positives = 31/76 (40%)
Query: 27 PRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDARQGPLRQGLGP 86
PR R+E+ RGA A + + D HV+ AVA A R DA P R + P
Sbjct: 113 PRPRKEKWEERGARRPASSAAQDDYARHVRDPPAVAVAAPKARASAPDAVVTPPRLAVAP 172
Query: 87 SCGAHPGSAPGVPGGP 102
SA G P
Sbjct: 173 VPVLPAASAAGDMSNP 188
>gi|239745760 PREDICTED: similar to hCG1774990 [Homo sapiens]
Length = 280
Score = 32.7 bits (73), Expect = 0.065
Identities = 25/76 (32%), Positives = 31/76 (40%)
Query: 27 PRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDARQGPLRQGLGP 86
PR R+E+ RGA A + + D HV+ AVA A R DA P R + P
Sbjct: 147 PRPRKEKWEERGARRPASSAAQDDYARHVRDPPAVAVAAPKARASAPDAVVTPPRLAVAP 206
Query: 87 SCGAHPGSAPGVPGGP 102
SA G P
Sbjct: 207 VPVLPAASAAGDMSNP 222
>gi|21704287 sialidase 4 [Homo sapiens]
Length = 496
Score = 32.7 bits (73), Expect = 0.065
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 13 SAWWPAGGLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDG-HVQQRQAVASRAATKRPG 71
+AW G +V P R + S GPG+P + G H +A + PG
Sbjct: 284 TAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPG 343
Query: 72 EIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAGS 108
+R P +G GP PG PGV G D GS
Sbjct: 344 GPFSRLQP--RGDGP---RQPGPRPGVSG----DVGS 371
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 32.3 bits (72), Expect = 0.084
Identities = 28/102 (27%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 17 PAGGLVPAQLPRSRREQAHSRGAGPGA-------PAHGEVDVDGHVQ----QRQAVASRA 65
P G L + R + Q GAGPGA P + G + Q+Q +R
Sbjct: 99 PPGPLQTRRYCRHQGRQGSGLGAGPGAGTWAPAPPGVSKPRCPGRARPGEGQQQVTTARP 158
Query: 66 ATKRPGEIDARQGPLRQGLGPSCGAHPGSAPGVPGGPDVDAG 107
G R G G GP GA GP V G
Sbjct: 159 PAINRGARQPRAGAAAAGRGPGAGAWRTGEAAASAGPAVGEG 200
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 32.3 bits (72), Expect = 0.084
Identities = 30/92 (32%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 17 PAGGLVPAQLPRSRREQAHSRGA--GPGAPAHGEVDVDGHVQQ----RQAVASRAATKRP 70
P GG PA +P + A GPG A D G Q AS AA P
Sbjct: 160 PGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAP 219
Query: 71 GEIDARQGPLRQGLGPSCGAHPG-SAPGVPGG 101
G +D Q C +PG S PG GG
Sbjct: 220 GSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGG 251
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 32.3 bits (72), Expect = 0.084
Identities = 30/92 (32%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 17 PAGGLVPAQLPRSRREQAHSRGA--GPGAPAHGEVDVDGHVQQ----RQAVASRAATKRP 70
P GG PA +P + A GPG A D G Q AS AA P
Sbjct: 160 PGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAP 219
Query: 71 GEIDARQGPLRQGLGPSCGAHPG-SAPGVPGG 101
G +D Q C +PG S PG GG
Sbjct: 220 GSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGG 251
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 32.3 bits (72), Expect = 0.084
Identities = 30/92 (32%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 17 PAGGLVPAQLPRSRREQAHSRGA--GPGAPAHGEVDVDGHVQQ----RQAVASRAATKRP 70
P GG PA +P + A GPG A D G Q AS AA P
Sbjct: 160 PGGGGGPAAVPEFNNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAAGAP 219
Query: 71 GEIDARQGPLRQGLGPSCGAHPG-SAPGVPGG 101
G +D Q C +PG S PG GG
Sbjct: 220 GSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGG 251
>gi|94536864 hypothetical protein LOC138724 isoform D [Homo sapiens]
Length = 1031
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 40 GPGAPAHGEVDVDGHVQQRQAVASRAATKR-----PGEIDARQGPLRQGLGPSCGA-HPG 93
GPG P++ +V V G ++ +A AS +A KR P D R+G R GL G HP
Sbjct: 869 GPGEPSNSKVLVSGK-RKDKASASSSAKKREHPRKPKAGDHRRGTARLGLSTVTGKNHPA 927
Query: 94 SAPGVPGGP 102
A + P
Sbjct: 928 QARSLVEAP 936
>gi|94536862 hypothetical protein LOC138724 isoform C [Homo sapiens]
Length = 1006
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 40 GPGAPAHGEVDVDGHVQQRQAVASRAATKR-----PGEIDARQGPLRQGLGPSCGA-HPG 93
GPG P++ +V V G ++ +A AS +A KR P D R+G R GL G HP
Sbjct: 844 GPGEPSNSKVLVSGK-RKDKASASSSAKKREHPRKPKAGDHRRGTARLGLSTVTGKNHPA 902
Query: 94 SAPGVPGGP 102
A + P
Sbjct: 903 QARSLVEAP 911
>gi|94536860 hypothetical protein LOC138724 isoform B [Homo sapiens]
Length = 1044
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 40 GPGAPAHGEVDVDGHVQQRQAVASRAATKR-----PGEIDARQGPLRQGLGPSCGA-HPG 93
GPG P++ +V V G ++ +A AS +A KR P D R+G R GL G HP
Sbjct: 882 GPGEPSNSKVLVSGK-RKDKASASSSAKKREHPRKPKAGDHRRGTARLGLSTVTGKNHPA 940
Query: 94 SAPGVPGGP 102
A + P
Sbjct: 941 QARSLVEAP 949
>gi|94681096 hypothetical protein LOC138724 isoform A [Homo sapiens]
Length = 1079
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 40 GPGAPAHGEVDVDGHVQQRQAVASRAATKR-----PGEIDARQGPLRQGLGPSCGA-HPG 93
GPG P++ +V V G ++ +A AS +A KR P D R+G R GL G HP
Sbjct: 917 GPGEPSNSKVLVSGK-RKDKASASSSAKKREHPRKPKAGDHRRGTARLGLSTVTGKNHPA 975
Query: 94 SAPGVPGGP 102
A + P
Sbjct: 976 QARSLVEAP 984
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 17 PAGGLVPAQLPRSRREQAHSRGAGP---GAPAHGEVDVDGHVQQRQAVASRAATKRPGEI 73
P GL+P +P G GP P+ ++ G +Q + S + PG +
Sbjct: 246 PNPGLIPGPIP------GPISGPGPIIGPIPSPAQIPGPGRLQGPGPILSPGRMRSPGSL 299
Query: 74 DARQGPLRQGLGPSCGAHPGSAPGVPG 100
L G GP G+ P PG PG
Sbjct: 300 PGLAPILGPGSGPGSGSVPAPIPG-PG 325
>gi|156071474 solute carrier family 4, anion exchanger, member 2
(erythrocyte membrane protein band 3-like 1) [Homo
sapiens]
Length = 1241
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 32 EQAHSRGAGPGAPAHGEVDVDGHVQQRQAVASRAATKRPGEIDARQGPLRQGLGPSCGAH 91
++A SRG ++GE D + H Q + +T P DAR+ QG G
Sbjct: 52 QEAGSRGGEEPGRSYGEEDFEYHRQSSHHIHHPLSTHLPP--DARRRKTPQGPGRKPRRR 109
Query: 92 PGSAP 96
PG++P
Sbjct: 110 PGASP 114
>gi|83716021 GRB2-associated binding protein family, member 4 [Homo
sapiens]
Length = 574
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 25 QLPRSRREQAHSRGAGPGAPAHGEVDVDGHVQQRQAVASR-AATKRPGEIDARQGPLRQG 83
++P S H+RG+ G+ A E + Q ASR A + G G G
Sbjct: 289 RIPWSLASHGHTRGSLTGSEADNEASSGKYTQHGGGNASRPAESMHEGVCSFLPGRTLVG 348
Query: 84 LGPSCGAHPGSAPGVPGGPDVDA 106
L S + P PG P + A
Sbjct: 349 LSDSIASEGSCVPMNPGSPTLPA 371
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,914,723
Number of Sequences: 37866
Number of extensions: 311252
Number of successful extensions: 1451
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 1324
Number of HSP's gapped (non-prelim): 262
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.