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Search of human proteins with 239741100
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741100 PREDICTED: hypothetical protein [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752738 PREDICTED: hypothetical protein [Homo sapiens] 228 8e-61
gi|239747274 PREDICTED: hypothetical protein [Homo sapiens] 228 8e-61
gi|239741100 PREDICTED: hypothetical protein [Homo sapiens] 228 8e-61
gi|62122917 filaggrin family member 2 [Homo sapiens] 33 0.064
gi|134244291 G-protein coupled receptor 37 like 1 [Homo sapiens] 32 0.14
gi|239746020 PREDICTED: hypothetical protein XP_002344182 [Homo ... 30 0.32
gi|156231037 kininogen 1 isoform 1 [Homo sapiens] 30 0.42
gi|148922920 DENN/MADD domain containing 4B [Homo sapiens] 30 0.42
gi|189491748 ataxin 1 [Homo sapiens] 29 0.71
gi|51479158 ataxin 1 [Homo sapiens] 29 0.71
gi|4504487 histidine rich calcium binding protein precursor [Hom... 29 0.93
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 28 1.2
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 28 1.2
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 28 1.2
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 28 1.2
gi|239758021 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239741335 PREDICTED: hypothetical protein XP_002342177 [Homo ... 28 1.6
gi|239754209 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239748740 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239755585 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|40354197 THAP domain containing 11 [Homo sapiens] 27 2.7
gi|222352127 sidekick 2 [Homo sapiens] 27 3.5
gi|148491076 G antigen 2D [Homo sapiens] 27 3.5
gi|148491064 G antigen 12G [Homo sapiens] 27 3.5
gi|148491062 G antigen 12J [Homo sapiens] 27 3.5
gi|45504369 solute carrier family 24, member 5 [Homo sapiens] 27 3.5
gi|148529018 G antigen 2B [Homo sapiens] 27 3.5
gi|187761326 G antigen 2A [Homo sapiens] 27 3.5
>gi|239752738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 228 bits (581), Expect = 8e-61
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MAAAPGASLPDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQ 60
MAAAPGASLPDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQ
Sbjct: 1 MAAAPGASLPDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQ 60
Query: 61 QGHQQQRELGHGRGARGIQTGGVSVNVHLAHGTHVLHAAGLVADPSRVAD 110
QGHQQQRELGHGRGARGIQTGGVSVNVHLAHGTHVLHAAGLVADPSRVAD
Sbjct: 61 QGHQQQRELGHGRGARGIQTGGVSVNVHLAHGTHVLHAAGLVADPSRVAD 110
>gi|239747274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 228 bits (581), Expect = 8e-61
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MAAAPGASLPDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQ 60
MAAAPGASLPDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQ
Sbjct: 1 MAAAPGASLPDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQ 60
Query: 61 QGHQQQRELGHGRGARGIQTGGVSVNVHLAHGTHVLHAAGLVADPSRVAD 110
QGHQQQRELGHGRGARGIQTGGVSVNVHLAHGTHVLHAAGLVADPSRVAD
Sbjct: 61 QGHQQQRELGHGRGARGIQTGGVSVNVHLAHGTHVLHAAGLVADPSRVAD 110
>gi|239741100 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 228 bits (581), Expect = 8e-61
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MAAAPGASLPDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQ 60
MAAAPGASLPDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQ
Sbjct: 1 MAAAPGASLPDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQ 60
Query: 61 QGHQQQRELGHGRGARGIQTGGVSVNVHLAHGTHVLHAAGLVADPSRVAD 110
QGHQQQRELGHGRGARGIQTGGVSVNVHLAHGTHVLHAAGLVADPSRVAD
Sbjct: 61 QGHQQQRELGHGRGARGIQTGGVSVNVHLAHGTHVLHAAGLVADPSRVAD 110
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 32.7 bits (73), Expect = 0.064
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 46 EGEPGRSQHERAQAQQGHQQQRELGHGR-GARGIQTGGVSVNVHLAHG 92
E P S H +QA H Q GHGR G QTG + + H +G
Sbjct: 2191 EASPTHSGHTHSQAGSRHGQSGSSGHGRQGTTHGQTGDTTRHAHYGYG 2238
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 52 SQHERAQAQQGHQ--QQRELGHGRGARGIQTGGVSVNVHLAHGT 93
S H +GH GH G G Q G +VH HGT
Sbjct: 2028 SGHSEYSDSEGHSGVSHTHSGHAHGQAGSQHGESGSSVHERHGT 2071
>gi|134244291 G-protein coupled receptor 37 like 1 [Homo sapiens]
Length = 481
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 5 PGASLPDSVVLFQFTPQARRKWWKAQLWVILG-----AAPVTRYQEEGEPGR------SQ 53
P ASLP+S+ T Q R WW + L + ++ G PGR S+
Sbjct: 290 PSASLPESLYSLVMTYQNARMWWYFGCYFCLPILFTVTCQLVTWRVRGPPGRKSECRASK 349
Query: 54 HERAQAQ 60
HE+ ++Q
Sbjct: 350 HEQCESQ 356
>gi|239746020 PREDICTED: hypothetical protein XP_002344182 [Homo
sapiens]
Length = 162
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 36 GAAPVTRYQEEGEPGRSQHERAQAQQGHQQQRELGHG--RGARGIQTGG 82
G PV GE ++HE QA++GH R+L AR Q GG
Sbjct: 23 GQGPVLLAAAAGERREARHEEVQAREGHHVHRQLAQVSIELAREAQRGG 71
>gi|156231037 kininogen 1 isoform 1 [Homo sapiens]
Length = 644
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 45 EEGEPGRSQHERAQAQQGHQQQRE--LGHGRGARGIQTGGVSVNVHLAHGTHVLHAAG 100
EE + G+ Q + GH++QR+ LGHG Q G L HG H G
Sbjct: 415 EERDSGKEQGHTRRHDWGHEKQRKHNLGHGHKHERDQGHGHQRGHGLGHGHEQQHGLG 472
>gi|148922920 DENN/MADD domain containing 4B [Homo sapiens]
Length = 1496
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 19 TPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQQGHQQQRE 68
TP R +W K + V+LGAA + E R Q ++ Q QQ QQQ+E
Sbjct: 867 TPGGRLRWAKLRN-VVLGAAQFRQPLRE----RQQQQQQQQQQQQQQQQE 911
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 44 QEEGEPGRSQHERAQAQQGHQQQRELGHGRGARGIQTGG 82
Q++ + + QH+ Q QQ QQQ++ H A G+ T G
Sbjct: 199 QQQQQQQQQQHQHQQQQQQQQQQQQQQHLSRAPGLITPG 237
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 29.3 bits (64), Expect = 0.71
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 44 QEEGEPGRSQHERAQAQQGHQQQRELGHGRGARGIQTGG 82
Q++ + + QH+ Q QQ QQQ++ H A G+ T G
Sbjct: 199 QQQQQQQQQQHQHQQQQQQQQQQQQQQHLSRAPGLITPG 237
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 28.9 bits (63), Expect = 0.93
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 45 EEGEPGRSQHERAQAQQGHQQQRELGHG 72
EE E + E A + GHQ R GHG
Sbjct: 193 EEEEEEEEEEEEASTEYGHQAHRHRGHG 220
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 36 GAAPV---TRYQEEGEPGRSQHERAQAQQGHQQQRELGHGRG 74
GAAP Y + G PG ++ R A+ G QQQR G G+G
Sbjct: 513 GAAPPRGRAGYSQRGGPGSARGVRG-ARGGAQQQRGRGQGKG 553
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 36 GAAPV---TRYQEEGEPGRSQHERAQAQQGHQQQRELGHGRG 74
GAAP Y + G PG ++ R A+ G QQQR G G+G
Sbjct: 478 GAAPPRGRAGYSQRGGPGSARGVRG-ARGGAQQQRGRGQGKG 518
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 36 GAAPV---TRYQEEGEPGRSQHERAQAQQGHQQQRELGHGRG 74
GAAP Y + G PG ++ R A+ G QQQR G G+G
Sbjct: 415 GAAPPRGRAGYSQRGGPGSARGVRG-ARGGAQQQRGRGQGKG 455
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 37 AAPVTRYQEEGEPGRSQHERAQAQQGHQQQRELGHGRGA 75
AA Q++ + + Q ++ Q QQ QQQ++L H G+
Sbjct: 96 AAAAAAAQQQQQQQQQQQQQQQQQQQQQQQQQLNHVDGS 134
>gi|239758021 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 24 RKWWKAQLWVILGAAPVTRYQE----EGEPGRSQHERAQAQQGHQQQRELGHGRGARGIQ 79
R+W +LW + P Q+ E +P + + QQ+ GH G G
Sbjct: 77 RRWDLWRLWWLRQQPPPPELQQPPELEPQPPPELEPQQPPELTLQQEETGGHLGGHLGAG 136
Query: 80 TGGVSVNVHLAHGTH 94
GV + VHL G H
Sbjct: 137 HLGVHLGVHLGGGWH 151
>gi|239741335 PREDICTED: hypothetical protein XP_002342177 [Homo
sapiens]
Length = 214
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 24 RKWWKAQLWVILGAAPVTRYQE----EGEPGRSQHERAQAQQGHQQQRELGHGRGARGIQ 79
R+W +LW + P Q+ E +P + + QQ+ GH G G
Sbjct: 77 RRWDLWRLWWLRQQPPPPELQQPPELEPQPPPELEPQQPPELTLQQEETGGHLGGHLGAG 136
Query: 80 TGGVSVNVHLAHGTH 94
GV + VHL G H
Sbjct: 137 HLGVHLGVHLGGGWH 151
>gi|239754209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 34 ILGAAPVTRYQEEGEPGRSQHERAQAQQGHQQQRELGH--GRGARGIQTGG 82
+L AAP + +E G HE QA++GH R+L + AR Q GG
Sbjct: 174 VLLAAPAGQGREAG------HEEVQAREGHHVHRQLAQVCVQLAREAQAGG 218
>gi|239748740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 34 ILGAAPVTRYQEEGEPGRSQHERAQAQQGHQQQRELGH--GRGARGIQTGG 82
+L AAP + +E G HE QA++GH R+L + AR Q GG
Sbjct: 174 VLLAAPAGQGREAG------HEEVQAREGHHVHRQLAQVCVQLAREAQAGG 218
>gi|239755585 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 20 PQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQQGHQQQRELGHGRGARG 77
P R K K + ++L + Q E R QHER Q Q +GH G+RG
Sbjct: 218 PWGRGKELKILVLLLLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRG 275
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 20 PQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQQGHQQQRELGHGRGARG 77
P R K K + ++L + Q E R QHER Q Q +GH G+RG
Sbjct: 218 PWGRGKELKILVLLLLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRG 275
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/58 (32%), Positives = 25/58 (43%)
Query: 20 PQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHERAQAQQGHQQQRELGHGRGARG 77
P R K K + ++L + Q E R QHER Q Q +GH G+RG
Sbjct: 218 PWGRGKELKILVLLLLPVQSGQQRQVEQLQHRHQHERGQQQLVEGAPDGVGHLHGSRG 275
>gi|40354197 THAP domain containing 11 [Homo sapiens]
Length = 314
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 36 GAAPVTRYQEEGEPGRSQHERAQAQQGHQQQRE 68
GAA R Q++ + + Q ++ Q QQ QQQ++
Sbjct: 96 GAAAARRRQQQQQQQQQQQQQQQQQQQQQQQQQ 128
>gi|222352127 sidekick 2 [Homo sapiens]
Length = 2172
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 10 PDSVVLFQFTPQARRKWWKAQLWVILGAAPVTRYQEEGEPGRSQHE 55
P+SV LF+ T Q R+ W +A +++ R Q P Q +
Sbjct: 1367 PESVYLFRITAQTRKGWGEAAEALVVTTEKRDRPQPPSRPMVQQED 1412
>gi|148491076 G antigen 2D [Homo sapiens]
Length = 116
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 EEGEPGRSQHERAQAQQGHQQQRELGHG 72
EEGEP + + A AQ+G + G G
Sbjct: 41 EEGEPATQRQDPAAAQEGEDEGASAGQG 68
>gi|148491064 G antigen 12G [Homo sapiens]
Length = 117
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 EEGEPGRSQHERAQAQQGHQQQRELGHG 72
EEGEP + + A AQ+G + G G
Sbjct: 42 EEGEPATQRQDPAAAQEGEDEGASAGQG 69
>gi|148491062 G antigen 12J [Homo sapiens]
Length = 117
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 EEGEPGRSQHERAQAQQGHQQQRELGHG 72
EEGEP + + A AQ+G + G G
Sbjct: 42 EEGEPATQRQDPAAAQEGEDEGASAGQG 69
>gi|45504369 solute carrier family 24, member 5 [Homo sapiens]
Length = 500
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 8 SLPDSVVLFQFTPQARRKWWK 28
SLP +LF TP R+K+WK
Sbjct: 311 SLPIITLLFLTTPDCRKKFWK 331
>gi|148529018 G antigen 2B [Homo sapiens]
Length = 116
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 EEGEPGRSQHERAQAQQGHQQQRELGHG 72
EEGEP + + A AQ+G + G G
Sbjct: 41 EEGEPATQRQDPAAAQEGEDEGASAGQG 68
>gi|187761326 G antigen 2A [Homo sapiens]
Length = 116
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 EEGEPGRSQHERAQAQQGHQQQRELGHG 72
EEGEP + + A AQ+G + G G
Sbjct: 41 EEGEPATQRQDPAAAQEGQDEGASAGQG 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,816,063
Number of Sequences: 37866
Number of extensions: 203795
Number of successful extensions: 743
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 84
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.