Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128789 Sequence: fasta or formatted (110aa) NCBI GI: 239752738
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {110aa} PREDICTED: hypothetical protein
alt mRNA {110aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         16           3
 C cysteine            0.0          0           0
 D aspartate           2.7          3           1
 E glutamate           4.5          5           2
 F phenylalanine       1.8          2           1
 G glycine            11.8         13           2
 H histidine           6.4          7           1
 I isoleucine          1.8          2           1
 K lysine              1.8          2           1
 L leucine             7.3          8           1
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline             5.5          6           1
 Q glutamine          10.9         12           3
 R arginine            8.2          9           2
 S serine              4.5          5           1
 T threonine           3.6          4           1
 V valine              9.1         10           2
 W tryptophan          2.7          3           2
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128789          1.000   PREDICTED: hypothetical protein 
LOC100128789          1.000   PREDICTED: hypothetical protein 
FLG2                  0.039   filaggrin family member 2 
GPR37L1               0.034   G-protein coupled receptor 37 like 1 
LOC100289263          0.025   PREDICTED: hypothetical protein XP_002344182 
KNG1                  0.025   kininogen 1 isoform 1 
DENND4B               0.025   DENN/MADD domain containing 4B 
ATXN1                 0.020   ataxin 1 
ATXN1                 0.020   ataxin 1 
HRC                   0.020   histidine rich calcium binding protein precursor [Hom...
SYNCRIP               0.015   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.015   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.015   synaptotagmin binding, cytoplasmic RNA interacting ...
C14orf4               0.015   chromosome 14 open reading frame 4 
LOC100293210          0.015   PREDICTED: hypothetical protein 
LOC100289267          0.015   PREDICTED: hypothetical protein XP_002342177 
LOC100133479          0.015   PREDICTED: hypothetical protein 
LOC100133479          0.015   PREDICTED: hypothetical protein 
LOC100128074          0.010   PREDICTED: hypothetical protein 
LOC100128074          0.010   PREDICTED: hypothetical protein 
LOC100128074          0.010   PREDICTED: hypothetical protein 
THAP11                0.010   THAP domain containing 11 
SDK2                  0.010   sidekick 2 
GAGE2D                0.010   G antigen 2D 
GAGE12G               0.010   G antigen 12G 
GAGE12J               0.010   G antigen 12J 
SLC24A5               0.010   solute carrier family 24, member 5 
GAGE2B                0.010   G antigen 2B 
GAGE2A                0.010   G antigen 2A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press