Guide to the Human Genome
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Name: LOC100133479 Sequence: fasta or formatted (278aa) NCBI GI: 239754209
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {278aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         33           2
 C cysteine            0.7          2           1
 D aspartate           3.6         10           1
 E glutamate           7.6         21           2
 F phenylalanine       1.1          3           1
 G glycine            14.7         41           4
 H histidine          10.1         28           2
 I isoleucine          1.1          3           1
 K lysine              0.0          0           0
 L leucine            15.8         44           4
 M methionine          0.4          1           1
 N asparagine          0.4          1           1
 P proline             3.2          9           1
 Q glutamine           5.8         16           1
 R arginine            7.2         20           1
 S serine              1.1          3           1
 T threonine           0.4          1           1
 V valine             15.1         42           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133479          1.000   PREDICTED: hypothetical protein 
LOC100289263          0.342   PREDICTED: hypothetical protein XP_002344182 
LOC100294500          0.164   PREDICTED: hypothetical protein 
LOC100294235          0.164   PREDICTED: hypothetical protein 
LOC100294090          0.164   PREDICTED: hypothetical protein 
LOC100293488          0.162   PREDICTED: hypothetical protein 
LOC100287146          0.162   PREDICTED: hypothetical protein 
LOC100287146          0.162   PREDICTED: hypothetical protein XP_002342659 
LOC100294291          0.162   PREDICTED: hypothetical protein XP_002344065 
LOC100294202          0.162   PREDICTED: hypothetical protein 
LOC100294173          0.162   PREDICTED: hypothetical protein 
LOC100294123          0.162   PREDICTED: hypothetical protein 
LOC100293929          0.060   PREDICTED: hypothetical protein 
LOC100288366          0.060   PREDICTED: hypothetical protein 
LOC100288366          0.060   PREDICTED: hypothetical protein XP_002343207 
LOC100293962          0.057   PREDICTED: hypothetical protein 
LOC100128598          0.026   PREDICTED: hypothetical protein 
LOC100291455          0.023   PREDICTED: hypothetical protein XP_002346892 
LOC100288744          0.023   PREDICTED: hypothetical protein XP_002342752 
LOC100288744          0.023   PREDICTED: hypothetical protein 
LOC100128598          0.021   PREDICTED: hypothetical protein 
LOC100128598          0.021   PREDICTED: hypothetical protein 
LOC100133305          0.017   PREDICTED: hypothetical protein 
LOC100133305          0.017   PREDICTED: hypothetical protein 
LOC100289819          0.015   PREDICTED: hypothetical protein XP_002347589 
LOC100292122          0.013   PREDICTED: hypothetical protein XP_002345138 
LOC100292799          0.013   PREDICTED: hypothetical protein 
LOC100289979          0.013   PREDICTED: hypothetical protein XP_002346878 
LOC100286986          0.013   PREDICTED: hypothetical protein XP_002344191 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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