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Search of human proteins with 239740976
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo
sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo ... 312 6e-86
gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo ... 312 6e-86
gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo ... 306 3e-84
gi|239508694 PREDICTED: hypothetical protein [Homo sapiens] 305 7e-84
gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo ... 298 9e-82
gi|239743164 PREDICTED: hypothetical protein [Homo sapiens] 191 3e-49
gi|239508826 PREDICTED: hypothetical protein [Homo sapiens] 191 3e-49
gi|239753887 PREDICTED: hypothetical protein [Homo sapiens] 57 6e-09
gi|153791662 coiled-coil domain containing 71 [Homo sapiens] 36 0.014
gi|169167742 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 34 0.040
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 34 0.040
gi|239742483 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 34 0.040
gi|89941479 hypothetical protein LOC148137 [Homo sapiens] 33 0.089
gi|157266264 pleckstrin homology-like domain, family B, member 3... 32 0.26
gi|42733592 hypothetical protein LOC399693 [Homo sapiens] 32 0.26
gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Hom... 31 0.34
gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Hom... 31 0.34
gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo sap... 31 0.34
gi|32455262 peroxiredoxin 5 isoform c precursor [Homo sapiens] 31 0.34
gi|4759068 cytochrome oxidase deficient homolog 1 [Homo sapiens] 31 0.44
gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens] 31 0.44
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 31 0.44
gi|169211438 PREDICTED: hypothetical protein [Homo sapiens] 30 0.58
gi|169211910 PREDICTED: hypothetical protein [Homo sapiens] 30 0.58
gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens] 30 0.58
gi|169211055 PREDICTED: hypothetical protein [Homo sapiens] 30 0.58
gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens] 30 0.58
gi|203098098 shroom family member 3 protein [Homo sapiens] 30 0.58
gi|32455260 peroxiredoxin 5 isoform b precursor [Homo sapiens] 30 0.58
gi|6912238 peroxiredoxin 5 isoform a precursor [Homo sapiens] 30 0.58
>gi|239742765 PREDICTED: hypothetical protein XP_002342631 [Homo
sapiens]
Length = 149
Score = 312 bits (800), Expect = 6e-86
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAF 60
MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAF
Sbjct: 1 MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAF 60
Query: 61 ERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
ERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS
Sbjct: 61 ERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
Query: 121 FAPGEAVERTELGPGRPTCCSSRPTSRPT 149
FAPGEAVERTELGPGRPTCCSSRPTSRPT
Sbjct: 121 FAPGEAVERTELGPGRPTCCSSRPTSRPT 149
>gi|239740976 PREDICTED: hypothetical protein XP_002344291 [Homo
sapiens]
Length = 149
Score = 312 bits (800), Expect = 6e-86
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAF 60
MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAF
Sbjct: 1 MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAF 60
Query: 61 ERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
ERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS
Sbjct: 61 ERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
Query: 121 FAPGEAVERTELGPGRPTCCSSRPTSRPT 149
FAPGEAVERTELGPGRPTCCSSRPTSRPT
Sbjct: 121 FAPGEAVERTELGPGRPTCCSSRPTSRPT 149
>gi|239744252 PREDICTED: hypothetical protein XP_002343084 [Homo
sapiens]
Length = 149
Score = 306 bits (785), Expect = 3e-84
Identities = 147/149 (98%), Positives = 148/149 (99%)
Query: 1 MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAF 60
MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRV CEAEAEAGPVQAF
Sbjct: 1 MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAF 60
Query: 61 ERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
ERQEAGPAKADWRSSSAPEEAAK+QKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS
Sbjct: 61 ERQEAGPAKADWRSSSAPEEAAKTQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
Query: 121 FAPGEAVERTELGPGRPTCCSSRPTSRPT 149
FAPGEAVERTELGPGRPTCCSSRPTSRPT
Sbjct: 121 FAPGEAVERTELGPGRPTCCSSRPTSRPT 149
>gi|239508694 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 305 bits (782), Expect = 7e-84
Identities = 147/149 (98%), Positives = 147/149 (98%)
Query: 1 MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAF 60
MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRV CEAEAEAGPVQAF
Sbjct: 1 MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVRCEAEAEAGPVQAF 60
Query: 61 ERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
E QEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS
Sbjct: 61 ETQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
Query: 121 FAPGEAVERTELGPGRPTCCSSRPTSRPT 149
FAPGEAVERTELGPGRPTCCSSRPTSRPT
Sbjct: 121 FAPGEAVERTELGPGRPTCCSSRPTSRPT 149
>gi|239745658 PREDICTED: hypothetical protein XP_002344164 [Homo
sapiens]
Length = 149
Score = 298 bits (764), Expect = 9e-82
Identities = 144/149 (96%), Positives = 144/149 (96%)
Query: 1 MADVRNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAF 60
MADVRNELGLKRPLAGRSWTCRSGRK GALDWG RSEARASWAWRV CEAEAEAGPVQAF
Sbjct: 1 MADVRNELGLKRPLAGRSWTCRSGRKPGALDWGDRSEARASWAWRVRCEAEAEAGPVQAF 60
Query: 61 ERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
ERQEAGPAKA WRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS
Sbjct: 61 ERQEAGPAKAAWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGS 120
Query: 121 FAPGEAVERTELGPGRPTCCSSRPTSRPT 149
FAPGEA ERTELGPGRPTCCSSRPTSRPT
Sbjct: 121 FAPGEAAERTELGPGRPTCCSSRPTSRPT 149
>gi|239743164 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 191 bits (484), Expect = 3e-49
Identities = 98/131 (74%), Positives = 107/131 (81%), Gaps = 3/131 (2%)
Query: 6 NELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEA 65
N +G KRPLAG SW CRSG++AGALD GG SEARASWAWRV CEAE GPVQAF RQEA
Sbjct: 2 NPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAET--GPVQAFGRQEA 59
Query: 66 GPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGSFAPGE 125
GP +ADWRSSS EAA+SQK GLGRPP M+WAGPKEATGRQE+LGLE L + +FAPGE
Sbjct: 60 GPGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQ-TFAPGE 118
Query: 126 AVERTELGPGR 136
A ER ELG GR
Sbjct: 119 AAERPELGLGR 129
Score = 43.5 bits (101), Expect = 7e-05
Identities = 38/104 (36%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 5 RNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFE--- 61
R ELGL R + W CR R+AGA+ G++ WA+R EA A P QA+
Sbjct: 122 RPELGLGRMI----WACRGHREAGAVP--GQAYLMTVWAYR--GRREAGAVPGQAYLTTV 173
Query: 62 ------RQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWA 99
R+E + S+ P AK Q G RPPR MS A
Sbjct: 174 WSCRGCREEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLA 217
>gi|239508826 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 191 bits (484), Expect = 3e-49
Identities = 98/131 (74%), Positives = 107/131 (81%), Gaps = 3/131 (2%)
Query: 6 NELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEA 65
N +G KRPLAG SW CRSG++AGALD GG SEARASWAWRV CEAE GPVQAF RQEA
Sbjct: 2 NPMGQKRPLAGGSWACRSGQEAGALDSGGCSEARASWAWRVRCEAET--GPVQAFGRQEA 59
Query: 66 GPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGSFAPGE 125
GP +ADWRSSS EAA+SQK GLGRPP M+WAGPKEATGRQE+LGLE L + +FAPGE
Sbjct: 60 GPGEADWRSSSESAEAAESQKWGLGRPPGGMNWAGPKEATGRQEDLGLEILIQ-TFAPGE 118
Query: 126 AVERTELGPGR 136
A ER ELG GR
Sbjct: 119 AAERPELGLGR 129
Score = 43.5 bits (101), Expect = 7e-05
Identities = 38/104 (36%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 5 RNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFE--- 61
R ELGL R + W CR R+AGA+ G++ WA+R EA A P QA+
Sbjct: 122 RPELGLGRMI----WACRGHREAGAVP--GQAYLMTVWAYR--GRREAGAVPGQAYLTTV 173
Query: 62 ------RQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWA 99
R+E + S+ P AK Q G RPPR MS A
Sbjct: 174 WSCRGCREEELGLERPTGGSAGPGAHAKEQTPGRERPPRRMSLA 217
>gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 57.0 bits (136), Expect = 6e-09
Identities = 48/131 (36%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 18 SWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSSSA 77
+W CR R+AGA G ++ R WA R EA+AGP A + + + S
Sbjct: 2 TWACRGRREAGA--GPGEADFRTIWACRG--RQEAQAGPRGAHQPEAVWGLQMPSEGRSW 57
Query: 78 PEEAAKSQKRGLGR-------PPRAM-SWAGP--KEATGRQEELGLERLTRGSFAPGEAV 127
P EA + GLG P RA SWAG K+ GR E GLE G PGE
Sbjct: 58 PGEATVRPELGLGSLASGSCGPTRAAGSWAGAESKDVVGRPES-GLETQPGGRAGPGEDA 116
Query: 128 ERTELGPGRPT 138
R ++G RPT
Sbjct: 117 GRLQVGLERPT 127
Score = 36.2 bits (82), Expect = 0.010
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 26/105 (24%)
Query: 41 SWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAG 100
+WA C EAG AGP +AD+R+ A ++Q AG
Sbjct: 2 TWA----CRGRREAG---------AGPGEADFRTIWACRGRQEAQ-------------AG 35
Query: 101 PKEATGRQEELGLERLTRGSFAPGEAVERTELGPGRPTCCSSRPT 145
P+ A + GL+ + G PGEA R ELG G S PT
Sbjct: 36 PRGAHQPEAVWGLQMPSEGRSWPGEATVRPELGLGSLASGSCGPT 80
>gi|153791662 coiled-coil domain containing 71 [Homo sapiens]
Length = 467
Score = 35.8 bits (81), Expect = 0.014
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 35 RSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSSS--APEEAAKSQKRGLGRP 92
R++A+A+ +V +A+A+A V+A + A AKA ++ + A + A++Q RG GRP
Sbjct: 310 RAKAKAA---QVKAKAKAKAAQVKAKAKVMAAWAKAKAKAKAVRAKAKVARTQPRGRGRP 366
Query: 93 P-RAMSWAGPKEATGRQEELGLERLTRGSFAPGEAVERTELGPGRP 137
A + K R E +G +R +RT LGP P
Sbjct: 367 KGSAKARTTRKGQKNRPETVGQKRKRAEEAKDLPPKKRTRLGPRSP 412
>gi|169167742 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 494
Score = 34.3 bits (77), Expect = 0.040
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 50 AEAEAGPVQAFERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQE 109
A A GP QA E E G A R+ ++ + R G PP A+ GP R+
Sbjct: 348 ARAARGP-QAQEEDEVGGAGQRGRTGQEDADSREGSPRA-GLPP-ALGSRGPAAPAPRKA 404
Query: 110 EL-GLERLTRGSFAPGEAVERTELGPG-RPTCCSSRPTSR 147
L L+RL R S PG V R + PT RP +
Sbjct: 405 SLLPLQRLRRRSVRPGVVVPRVRVSKAPAPTFQPERPARK 444
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 34.3 bits (77), Expect = 0.040
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 50 AEAEAGPVQAFERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQE 109
A A GP QA E E G A R+ ++ + R G PP A+ GP R+
Sbjct: 860 ARAARGP-QAQEEDEVGGAGQRGRTGQEDADSREGSPRA-GLPP-ALGSRGPAAPAPRKA 916
Query: 110 EL-GLERLTRGSFAPGEAVERTELGPG-RPTCCSSRPTSR 147
L L+RL R S PG V R + PT RP +
Sbjct: 917 SLLPLQRLRRRSVRPGVVVPRVRVSKAPAPTFQPERPARK 956
>gi|239742483 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 494
Score = 34.3 bits (77), Expect = 0.040
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 50 AEAEAGPVQAFERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQE 109
A A GP QA E E G A R+ ++ + R G PP A+ GP R+
Sbjct: 348 ARAARGP-QAQEEDEVGGAGQRGRTGQEDADSREGSPRA-GLPP-ALGSRGPAAPAPRKA 404
Query: 110 EL-GLERLTRGSFAPGEAVERTELGPG-RPTCCSSRPTSR 147
L L+RL R S PG V R + PT RP +
Sbjct: 405 SLLPLQRLRRRSVRPGVVVPRVRVSKAPAPTFQPERPARK 444
>gi|89941479 hypothetical protein LOC148137 [Homo sapiens]
Length = 425
Score = 33.1 bits (74), Expect = 0.089
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 53 EAGPVQAFERQEAGPAKAD--WRSSSAPEEAAKSQKRGLGRP 92
+A P ERQ AGP AD W S +P+ +++S G +P
Sbjct: 111 QAQPTSREERQPAGPTPADFWWLQSDSPDPSSQSAAAGANKP 152
>gi|157266264 pleckstrin homology-like domain, family B, member 3
[Homo sapiens]
Length = 640
Score = 31.6 bits (70), Expect = 0.26
Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 33 GGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSSSAPEEAAKSQKRGLGRP 92
G E+R A V E + G Q E +E G + S APE P
Sbjct: 27 GHPEESREQEASEVLAEPSSRGGAEQQAEEEEVGEGSSTESSRDAPE----------ATP 76
Query: 93 PRAMSWAGPKEATGRQEELGLERLTRG 119
P AM+ P + R+ G R +G
Sbjct: 77 PIAMAATPPASTSSREGVRGAARRLQG 103
>gi|42733592 hypothetical protein LOC399693 [Homo sapiens]
Length = 953
Score = 31.6 bits (70), Expect = 0.26
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 43 AWRVCCEAEAEAGP-VQAFERQEAGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGP 101
AW CE + GP ++ + + PA+ W SS + + RG+G P A A P
Sbjct: 544 AW-TACETWEDPGPRLRNPLERPSPPAQRPWSSSGVQRAGPQGKGRGIGSPVSAAKHALP 602
Query: 102 KEATGR--QEELGLERLT-------RGSFAPGEAVE 128
+ TG Q LG E+ T RG P + E
Sbjct: 603 R-PTGSFPQNPLGKEKDTLRPCPRSRGLLGPSHSSE 637
>gi|239752697 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 31.2 bits (69), Expect = 0.34
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 42 WAWRVCCEAEAEAGPVQAFERQEAGPAKAD---WRSSSAPEEAAKSQKRGLGRPPRA 95
WAW+ + Q ++QE GP ++ W+ + EE +Q G + PRA
Sbjct: 611 WAWQTWWQRILRLRVAQQLQQQEDGPLRSGTNAWQPGAQGEELPVAQDPGASQAPRA 667
>gi|239747231 PREDICTED: chromosome 1 open reading frame 167 [Homo
sapiens]
Length = 697
Score = 31.2 bits (69), Expect = 0.34
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 42 WAWRVCCEAEAEAGPVQAFERQEAGPAKAD---WRSSSAPEEAAKSQKRGLGRPPRA 95
WAW+ + Q ++QE GP ++ W+ + EE +Q G + PRA
Sbjct: 611 WAWQTWWQRILRLRVAQQLQQQEDGPLRSGTNAWQPGAQGEELPVAQDPGASQAPRA 667
>gi|239741039 PREDICTED: hypothetical protein LOC284498 [Homo
sapiens]
Length = 697
Score = 31.2 bits (69), Expect = 0.34
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 42 WAWRVCCEAEAEAGPVQAFERQEAGPAKAD---WRSSSAPEEAAKSQKRGLGRPPRA 95
WAW+ + Q ++QE GP ++ W+ + EE +Q G + PRA
Sbjct: 611 WAWQTWWQRILRLRVAQQLQQQEDGPLRSGTNAWQPGAQGEELPVAQDPGASQAPRA 667
>gi|32455262 peroxiredoxin 5 isoform c precursor [Homo sapiens]
Length = 125
Score = 31.2 bits (69), Expect = 0.34
Identities = 22/66 (33%), Positives = 29/66 (43%)
Query: 16 GRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRSS 75
G + C R AG + GG A+ A R C E E +G V++F R A A R
Sbjct: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMAPIKVRLL 61
Query: 76 SAPEEA 81
+ P A
Sbjct: 62 ADPTGA 67
>gi|4759068 cytochrome oxidase deficient homolog 1 [Homo sapiens]
Length = 301
Score = 30.8 bits (68), Expect = 0.44
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 12 RPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKAD 71
RPL G+ W L++ G +E A R C +AEA
Sbjct: 13 RPLGGQLWRFLPR----GLEFWGPAEGTARVLLRQFCARQAEA----------------- 51
Query: 72 WRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEAT 105
WR+S P ++ RPP S GP ++T
Sbjct: 52 WRASGRPGYCLGTRPLSTARPPPPWSQKGPGDST 85
>gi|169166558 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 30.8 bits (68), Expect = 0.44
Identities = 34/111 (30%), Positives = 38/111 (34%), Gaps = 29/111 (26%)
Query: 31 DWG---GRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRS----SSAPEEAAK 83
DW GR +A A W WR R G WR S+A AA
Sbjct: 357 DWWEEPGRLKAGAGWGWRA--------------RRAGTGVPGRGWRGDRVRSAAGRYAAA 402
Query: 84 SQKRGLGRPPRAMSWAGPKEATGRQEELGLER--------LTRGSFAPGEA 126
G G P RA S+ G Q L LER L +G PG A
Sbjct: 403 GAGGGGGVPARADSFPGLHAQLEAQHWLELERSRERRLQALQQGGSGPGPA 453
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 0.44
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 22 RSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWR---SSSAP 78
R G A+ GG+ A S E+ P GP + +R S+ P
Sbjct: 87 RPGPGVSAVSAGGQQRAPESQE-----RPAEESAPALMPSSAPRGPTEPAFRRPSSADRP 141
Query: 79 EEAAKSQKRGLGRPPRAM-SWAGPKEATGR 107
S G GR PRAM S +G EATG+
Sbjct: 142 LAPGPSSSPGAGRAPRAMASPSGSSEATGK 171
>gi|169211438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 30.4 bits (67), Expect = 0.58
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 88 GLGRPPR-AMSWAGPKEATGRQEELGLERLTR--GSFAPGEAVERTELGPGRP 137
GLG PP+ A SW G T R+ ELG R PG R E GRP
Sbjct: 2 GLGLPPQCAGSWRGEGSETRRELELGYRGTPRRPPPLPPGPQAWRGEQRRGRP 54
>gi|169211910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 30.4 bits (67), Expect = 0.58
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 88 GLGRPPR-AMSWAGPKEATGRQEELGLERLTR--GSFAPGEAVERTELGPGRP 137
GLG PP+ A SW G T R+ ELG R PG R E GRP
Sbjct: 2 GLGLPPQCAGSWRGEGSETRRELELGYRGTPRRPPPLPPGPQAWRGEQRRGRP 54
>gi|169167297 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 30.4 bits (67), Expect = 0.58
Identities = 33/111 (29%), Positives = 39/111 (35%), Gaps = 29/111 (26%)
Query: 31 DWG---GRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRS----SSAPEEAAK 83
DW GR +A A W WR R G WR S+A AA
Sbjct: 357 DWWEEPGRLKAGAGWGWRA--------------RRAGTGVPGRGWRGDRVRSAAGRYAAA 402
Query: 84 SQKRGLGRPPRAMSWAGPKEATGRQEELGLER--------LTRGSFAPGEA 126
G G P RA ++ G + Q L LER L +G PG A
Sbjct: 403 GAGGGGGVPARADAFPGLQAQLEAQHWLELERSRERRLQALQQGGSGPGPA 453
>gi|169211055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 200
Score = 30.4 bits (67), Expect = 0.58
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 88 GLGRPPR-AMSWAGPKEATGRQEELGLERLTR--GSFAPGEAVERTELGPGRP 137
GLG PP+ A SW G T R+ ELG R PG R E GRP
Sbjct: 2 GLGLPPQCAGSWRGEGSETRRELELGYRGTPRRPPPLPPGPQAWRGEQRRGRP 54
>gi|169166473 PREDICTED: similar to hCG18094 [Homo sapiens]
Length = 459
Score = 30.4 bits (67), Expect = 0.58
Identities = 33/111 (29%), Positives = 39/111 (35%), Gaps = 29/111 (26%)
Query: 31 DWG---GRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPAKADWRS----SSAPEEAAK 83
DW GR +A A W WR R G WR S+A AA
Sbjct: 357 DWWEEPGRLKAGAGWGWRA--------------RRAGTGVPGRGWRGDRVRSAAGRYAAA 402
Query: 84 SQKRGLGRPPRAMSWAGPKEATGRQEELGLER--------LTRGSFAPGEA 126
G G P RA ++ G + Q L LER L +G PG A
Sbjct: 403 GAGGGGGVPARADAFPGLQAQLEAQHWLELERSRERRLQALQQGGSGPGPA 453
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 30.4 bits (67), Expect = 0.58
Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 30/132 (22%)
Query: 5 RNELGLKRPLAGRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQE 64
R +L L P+A RSW R + G RS EA A A P ER
Sbjct: 943 RRDLELGAPVASRSWRPRPS----SAHVGLRSP-----------EASASASPHTPRERHS 987
Query: 65 AGPAKADWRSSSAPEEAAKSQKRGLGRPPRAMSWAGPKEATGRQEELGLERLTRGSFAPG 124
PA+ D + P A + +R L + S++ P+ + E+G+
Sbjct: 988 VTPAEGD-LARPVPPAARRGARRRLTPEQKKRSYSEPE----KMNEVGIV---------- 1032
Query: 125 EAVERTELGPGR 136
E E LGP R
Sbjct: 1033 EEAEPAPLGPQR 1044
>gi|32455260 peroxiredoxin 5 isoform b precursor [Homo sapiens]
Length = 170
Score = 30.4 bits (67), Expect = 0.58
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 16 GRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPA 68
G + C R AG + GG A+ A R C E E +G V++F R A A
Sbjct: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMA 54
>gi|6912238 peroxiredoxin 5 isoform a precursor [Homo sapiens]
Length = 214
Score = 30.4 bits (67), Expect = 0.58
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 16 GRSWTCRSGRKAGALDWGGRSEARASWAWRVCCEAEAEAGPVQAFERQEAGPA 68
G + C R AG + GG A+ A R C E E +G V++F R A A
Sbjct: 2 GLAGVCALRRSAGYILVGGAGGQSAAAAARRCSEGEWASGGVRSFSRAAAAMA 54
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.128 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,132,314
Number of Sequences: 37866
Number of extensions: 339248
Number of successful extensions: 1249
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 1154
Number of HSP's gapped (non-prelim): 157
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.