Guide to the Human Genome
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Name: LOC402160 Sequence: fasta or formatted (459aa) NCBI GI: 169166473
Description:

PREDICTED: similar to hCG18094

Not currently referenced in the text

Other entries for this name:
alt prot {459aa} PREDICTED: similar to hCG18094
alt prot {459aa} PREDICTED: similar to hCG18094
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         55           3
 C cysteine            0.9          4           1
 D aspartate           2.6         12           1
 E glutamate          10.5         48           3
 F phenylalanine       1.3          6           2
 G glycine             7.6         35           5
 H histidine           0.9          4           1
 I isoleucine          2.6         12           2
 K lysine              6.1         28           2
 L leucine            10.0         46           2
 M methionine          1.7          8           1
 N asparagine          1.3          6           1
 P proline             4.1         19           2
 Q glutamine          10.5         48           2
 R arginine           13.9         64           3
 S serine              4.6         21           1
 T threonine           2.6         12           2
 V valine              4.1         19           1
 W tryptophan          1.7          8           2
 Y tyrosine            0.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG18094 
LOC402160             0.997   PREDICTED: similar to hCG18094 
LOC402160             0.993   PREDICTED: similar to hCG18094 
TCHH                  0.055   trichohyalin 
INCENP                0.047   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.047   inner centromere protein antigens 135/155kDa isofor...
LOC645202             0.042   PREDICTED: hypothetical protein LOC645202 
LOC440243             0.040   PREDICTED: Putative golgin subfamily A member 6-lik...
PLEC1                 0.040   plectin 1 isoform 11 
PLEC1                 0.040   plectin 1 isoform 10 
PLEC1                 0.040   plectin 1 isoform 8 
PLEC1                 0.040   plectin 1 isoform 7 
PLEC1                 0.040   plectin 1 isoform 6 
PLEC1                 0.040   plectin 1 isoform 3 
PLEC1                 0.040   plectin 1 isoform 2 
PLEC1                 0.040   plectin 1 isoform 1 
TCHP                  0.039   trichoplein 
TCHP                  0.039   trichoplein 
LOC100130174          0.039   PREDICTED: hypothetical protein 
LOC100130174          0.039   PREDICTED: hypothetical protein 
LOC100130174          0.039   PREDICTED: hypothetical protein 
PPL                   0.038   periplakin 
CGNL1                 0.037   cingulin-like 1 
GIGYF2                0.037   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.037   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.037   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.037   GRB10 interacting GYF protein 2 isoform b 
AKAP9                 0.037   A-kinase anchor protein 9 isoform 3 
ARGLU1                0.035   arginine and glutamate rich 1 
LOC283767             0.034   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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