Guide to the Human Genome
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Name: LOC100294340 Sequence: fasta or formatted (168aa) NCBI GI: 239740940
Description:

PREDICTED: hypothetical protein XP_002344108

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         10           2
 C cysteine            6.0         10           1
 D aspartate           7.7         13           2
 E glutamate          10.1         17           2
 F phenylalanine       4.2          7           2
 G glycine             3.6          6           1
 H histidine           1.8          3           1
 I isoleucine          5.4          9           1
 K lysine              7.1         12           2
 L leucine             5.4          9           1
 M methionine          2.4          4           1
 N asparagine          4.2          7           1
 P proline             4.8          8           1
 Q glutamine           4.2          7           1
 R arginine            3.6          6           1
 S serine              3.6          6           2
 T threonine           5.4          9           1
 V valine              7.1         12           2
 W tryptophan          1.2          2           1
 Y tyrosine            6.5         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344108 
LOC646043             0.964   PREDICTED: hypothetical protein 
BPTF                  0.348   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.348   bromodomain PHD finger transcription factor isoform ...
PHF2                  0.083   PHD finger protein 2 
PHF8                  0.080   PHD finger protein 8 
JHDM1D                0.074   jumonji C domain containing histone demethylase 1 ho...
CXXC1                 0.065   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.065   CXXC finger 1 (PHD domain) isoform 2 
PHF3                  0.060   PHD finger protein 3 
DIDO1                 0.057   death inducer-obliterator 1 isoform c 
DIDO1                 0.057   death inducer-obliterator 1 isoform b 
DIDO1                 0.057   death inducer-obliterator 1 isoform a 
DIDO1                 0.057   death inducer-obliterator 1 isoform a 
CECR2                 0.051   cat eye syndrome chromosome region, candidate 2 [Ho...
KAT2A                 0.042   general control of amino acid synthesis 5-like 2 [H...
TAF3                  0.030   RNA polymerase II transcription factor TAFII140 [Ho...
KAT2B                 0.030   K(lysine) acetyltransferase 2B 
TRIM24                0.030   transcriptional intermediary factor 1 alpha isoform ...
TRIM24                0.030   transcriptional intermediary factor 1 alpha isoform ...
ATAD2                 0.030   ATPase family, AAA domain containing 2 
PHF20                 0.027   PHD finger protein 20 
TRIM33                0.027   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.027   tripartite motif-containing 33 protein isoform alpha...
BRD8                  0.024   bromodomain containing 8 isoform 2 
KDM5B                 0.021   jumonji, AT rich interactive domain 1B 
MLL                   0.021   myeloid/lymphoid or mixed-lineage leukemia protein [...
BRD4                  0.021   bromodomain-containing protein 4 isoform short 
BRD4                  0.021   bromodomain-containing protein 4 isoform long 
EP300                 0.018   E1A binding protein p300 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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