Guide to the Human Genome
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Name: LOC100294292 Sequence: fasta or formatted (514aa) NCBI GI: 239740825
Description:

PREDICTED: hypothetical protein XP_002344066

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         59           2
 C cysteine            0.2          1           1
 D aspartate           6.6         34           1
 E glutamate          12.5         64           1
 F phenylalanine       0.2          1           1
 G glycine             0.8          4           1
 H histidine           0.2          1           1
 I isoleucine          1.4          7           1
 K lysine              0.2          1           1
 L leucine            24.3        125           2
 M methionine          0.8          4           1
 N asparagine          0.4          2           1
 P proline             8.0         41           2
 Q glutamine           0.0          0           0
 R arginine            0.6          3           1
 S serine              6.0         31           1
 T threonine           3.9         20           1
 V valine             22.2        114           2
 W tryptophan          0.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344066 
LOC100293520          0.724   PREDICTED: hypothetical protein 
LOC100294174          0.724   PREDICTED: hypothetical protein 
LOC100294124          0.724   PREDICTED: hypothetical protein 
LOC100287207          0.723   PREDICTED: hypothetical protein XP_002342660 
LOC100294237          0.721   PREDICTED: hypothetical protein 
LOC100287396          0.077   PREDICTED: hypothetical protein XP_002343076 
LOC100289996          0.077   PREDICTED: hypothetical protein XP_002347212 
SON                   0.025   SON DNA-binding protein isoform F 
SON                   0.025   SON DNA-binding protein isoform B 
STRC                  0.016   stereocilin 
ZNF518B               0.012   zinc finger protein 518B 
KIAA0754              0.011   hypothetical protein LOC643314 
NAT6                  0.011   N-acetyltransferase 6 
REST                  0.010   RE1-silencing transcription factor 
PPRC1                 0.010   peroxisome proliferator-activated receptor gamma, co...
KIAA0415              0.007   hypothetical protein LOC9907 
ZFY                   0.006   zinc finger protein, Y-linked isoform 1 
ZFY                   0.006   zinc finger protein, Y-linked isoform 2 
ZNF853                0.006   zinc finger protein 853 
LOC100129857          0.006   PREDICTED: hypothetical protein 
VPS13C                0.006   vacuolar protein sorting 13C protein isoform 1A [Hom...
VPS13C                0.006   vacuolar protein sorting 13C protein isoform 1B [Hom...
VPS13C                0.006   vacuolar protein sorting 13C protein isoform 2B [Hom...
VPS13C                0.006   vacuolar protein sorting 13C protein isoform 2A [Hom...
STAT2                 0.006   signal transducer and activator of transcription 2 [H...
LOC100129857          0.006   PREDICTED: hypothetical protein 
LOC100129857          0.006   PREDICTED: hypothetical protein 
HEATR5B               0.006   HEAT repeat containing 5B 
ZBTB40                0.006   zinc finger and BTB domain containing 40 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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